Wall clock time and date at job start Tue Mar 31 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30179 * 126.80097 * 2 1 4 4 O 1.20914 * 111.60307 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.56958 * 359.76047 * 4 3 2 6 6 C 1.50701 * 126.77679 * 180.28844 * 5 4 3 7 7 C 1.35452 * 106.44253 * 0.38018 * 5 4 3 8 8 S 1.76199 * 128.00341 * 179.91119 * 7 5 4 9 9 O 1.42102 * 106.40250 * 156.14082 * 8 7 5 10 10 O 1.42103 * 106.40218 * 23.21944 * 8 7 5 11 11 N 1.65595 * 107.22006 * 269.67994 * 8 7 5 12 12 C 1.39252 * 120.00304 * 64.99948 * 11 8 7 13 13 N 1.32305 * 119.72779 * 359.97438 * 12 11 8 14 14 C 1.32016 * 121.67413 * 179.75301 * 13 12 11 15 15 C 1.38011 * 120.95588 * 0.53503 * 14 13 12 16 16 C 1.38853 * 119.36761 * 359.47629 * 15 14 13 17 17 C 1.38708 * 118.45967 * 0.25127 * 16 15 14 18 18 O 1.36007 * 120.49914 * 179.97438 * 17 16 15 19 19 C 1.42906 * 117.00112 * 0.02562 * 18 17 16 20 20 C 1.52998 * 109.47377 * 179.97438 * 19 18 17 21 21 C 1.50692 * 109.47250 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00142 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00185 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00180 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00054 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47139 * 89.99768 * 25 23 21 27 27 H 1.48501 * 109.47436 * 210.00266 * 25 23 21 28 28 H 1.48507 * 109.46793 * 329.99793 * 25 23 21 29 29 H 1.08996 * 109.47115 * 269.97823 * 1 2 3 30 30 H 1.08999 * 109.46995 * 29.97696 * 1 2 3 31 31 H 1.09000 * 109.46934 * 149.97599 * 1 2 3 32 32 H 1.08993 * 109.47092 * 270.10851 * 6 5 4 33 33 H 1.08995 * 109.47112 * 30.11509 * 6 5 4 34 34 H 1.08997 * 109.46554 * 150.11191 * 6 5 4 35 35 H 0.97003 * 120.00411 * 245.00622 * 11 8 7 36 36 H 1.08000 * 119.52471 * 180.28851 * 14 13 12 37 37 H 1.08002 * 120.31999 * 179.75709 * 15 14 13 38 38 H 1.08004 * 120.77557 * 180.28159 * 16 15 14 39 39 H 1.08996 * 109.46877 * 299.99989 * 19 18 17 40 40 H 1.09004 * 109.46461 * 59.99756 * 19 18 17 41 41 H 1.08997 * 109.46984 * 300.00350 * 20 19 18 42 42 H 1.09002 * 109.47194 * 59.99638 * 20 19 18 43 43 H 0.97003 * 119.99770 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 4.9022 -1.3694 0.0114 7 6 2.3540 -1.1320 -0.0005 8 16 1.8923 -2.8324 0.0001 9 8 0.5816 -2.8922 0.5456 10 8 2.9938 -3.5470 0.5437 11 7 1.7626 -3.3057 -1.5814 12 6 2.8901 -3.3213 -2.3984 13 7 4.0625 -2.9564 -1.9055 14 6 5.1568 -2.9612 -2.6440 15 6 5.1163 -3.3396 -3.9706 16 6 3.9073 -3.7306 -4.5306 17 6 2.7744 -3.7213 -3.7303 18 8 1.5688 -4.0958 -4.2362 19 6 1.5359 -4.4915 -5.6091 20 6 0.1061 -4.8756 -5.9950 21 6 0.0713 -5.2922 -7.4428 22 1 0.9783 -5.2842 -8.0290 23 6 -1.1185 -5.6835 -8.0192 24 7 -1.1490 -6.0466 -9.2828 25 14 -2.6876 -5.6966 -7.0056 26 1 -3.3570 -4.3754 -7.1126 27 1 -3.5967 -6.7549 -7.5142 28 1 -2.3562 -5.9700 -5.5840 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 5.2202 -1.5549 -1.0145 33 1 5.6636 -0.7850 0.5278 34 1 4.7628 -2.3201 0.5260 35 1 0.9010 -3.5721 -1.9389 36 1 6.0966 -2.6610 -2.2048 37 1 6.0171 -3.3360 -4.5664 38 1 3.8504 -4.0354 -5.5652 39 1 1.8713 -3.6637 -6.2338 40 1 2.1941 -5.3478 -5.7562 41 1 -0.2290 -5.7034 -5.3702 42 1 -0.5525 -4.0196 -5.8477 43 1 -1.9860 -6.3222 -9.6882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069677364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:45 Heat of formation + Delta-G solvation = -28.383632 kcal Electronic energy + Delta-G solvation = -31552.763731 eV Core-core repulsion = 27114.634583 eV Total energy + Delta-G solvation = -4438.129148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.108 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.19748 -41.81947 -39.36938 -38.46316 -37.12966 -36.47352 -36.09788 -35.42658 -34.64147 -33.10856 -32.41815 -30.23493 -29.83571 -28.82034 -27.31974 -25.10798 -24.63679 -24.12244 -22.44122 -21.64206 -20.80531 -19.83626 -19.36947 -19.25433 -18.92506 -18.51020 -18.24889 -17.37623 -17.10914 -17.08247 -16.39856 -16.30030 -16.00008 -15.46636 -15.30393 -15.18901 -14.83607 -14.58216 -14.48619 -14.32579 -13.94111 -13.78909 -13.73185 -13.54555 -13.47374 -13.31320 -13.26540 -13.08230 -12.84750 -12.74504 -12.65724 -12.47286 -12.19555 -12.18341 -11.85607 -11.66783 -11.55930 -11.47755 -10.81510 -10.74170 -10.64787 -10.47705 -8.98831 -8.34776 -6.41118 -0.89624 0.00606 0.14998 0.23882 0.66749 1.36171 1.38647 1.49525 1.62059 1.95863 2.11095 2.32766 2.45926 2.74833 2.79758 3.01163 3.11616 3.13959 3.38228 3.64839 3.86233 3.88738 4.10876 4.14608 4.24096 4.28667 4.37870 4.40010 4.50392 4.58690 4.65942 4.69544 4.74824 4.86365 5.01432 5.07046 5.10140 5.18632 5.31598 5.32532 5.49687 5.50411 5.60593 6.15651 6.32255 6.65633 6.74314 6.96711 7.24421 8.80686 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.002917 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.347274 B = 9596.723063 C =10705.415193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.098 3.902 3 N -0.389 5.389 4 O 0.087 5.913 5 C 0.147 3.853 6 C -0.113 4.113 7 C -0.812 4.812 8 S 2.752 3.248 9 O -0.965 6.965 10 O -0.940 6.940 11 N -1.027 6.027 12 C 0.332 3.668 13 N -0.502 5.502 14 C 0.092 3.908 15 C -0.142 4.142 16 C -0.144 4.144 17 C 0.045 3.955 18 O -0.328 6.328 19 C 0.087 3.913 20 C -0.009 4.009 21 C -0.534 4.534 22 H 0.045 0.955 23 C 0.014 3.986 24 N -0.943 5.943 25 Si 0.944 3.056 26 H -0.266 1.266 27 H -0.283 1.283 28 H -0.247 1.247 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.443 0.557 36 H 0.215 0.785 37 H 0.178 0.822 38 H 0.150 0.850 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.029 0.971 42 H 0.027 0.973 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.142 10.498 19.556 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.065 4.065 3 N -0.101 5.101 4 O 0.032 5.968 5 C 0.081 3.919 6 C -0.169 4.169 7 C -0.902 4.902 8 S 2.838 3.162 9 O -0.956 6.956 10 O -0.930 6.930 11 N -0.778 5.778 12 C 0.099 3.901 13 N -0.219 5.219 14 C -0.063 4.063 15 C -0.162 4.162 16 C -0.171 4.171 17 C -0.007 4.007 18 O -0.241 6.241 19 C 0.012 3.988 20 C -0.046 4.046 21 C -0.572 4.572 22 H 0.063 0.937 23 C -0.184 4.184 24 N -0.583 5.583 25 Si 0.767 3.233 26 H -0.191 1.191 27 H -0.209 1.209 28 H -0.171 1.171 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.282 0.718 36 H 0.231 0.769 37 H 0.195 0.805 38 H 0.167 0.833 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.668 11.587 21.214 28.275 hybrid contribution -1.469 -0.713 -1.821 2.446 sum 13.199 10.875 19.393 25.856 Atomic orbital electron populations 1.20601 0.83898 1.05322 1.05643 1.23512 0.99741 0.86275 0.96955 1.73803 0.89439 1.24132 1.22680 1.84817 1.21752 1.23370 1.66833 1.25238 0.98209 0.82853 0.85619 1.21639 0.87722 0.99549 1.08019 1.32555 1.01083 1.25396 1.31167 1.00253 0.72683 0.72076 0.71155 1.93591 1.39361 1.87056 1.75561 1.93538 1.54411 1.69438 1.75583 1.53226 1.15590 1.78145 1.30875 1.17334 0.87212 0.99542 0.85965 1.67372 0.97548 1.18999 1.38005 1.23059 0.95760 0.96616 0.90910 1.22290 0.98434 0.98714 0.96782 1.21987 0.92360 1.01409 1.01354 1.19692 0.87172 1.01060 0.92811 1.85993 1.27824 1.80641 1.29677 1.22745 0.99573 0.98984 0.77465 1.19457 0.92940 0.97247 0.94979 1.21112 0.95684 1.45244 0.95149 0.93669 1.25840 1.02756 0.93950 0.95845 1.70021 1.28401 1.46149 1.13692 0.85754 0.78783 0.78524 0.80234 1.19147 1.20892 1.17075 0.87794 0.88568 0.88974 0.84764 0.86545 0.86210 0.71824 0.76855 0.80480 0.83257 0.91823 0.91764 0.95289 0.95453 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.96 9.78 71.24 0.70 -1.27 16 2 C 0.10 2.40 7.32 43.58 0.32 2.72 16 3 N -0.39 -10.06 12.07 -49.56 -0.60 -10.66 16 4 O 0.09 1.97 11.20 71.61 0.80 2.78 16 5 C 0.15 2.93 7.20 25.04 0.18 3.11 16 6 C -0.11 -1.38 8.51 71.24 0.61 -0.78 16 7 C -0.81 -18.96 6.06 22.40 0.14 -18.82 16 8 S 2.75 67.15 5.49 -56.49 -0.31 66.84 16 9 O -0.97 -26.79 16.41 -128.00 -2.10 -28.89 16 10 O -0.94 -24.68 14.51 -128.00 -1.86 -26.54 16 11 N -1.03 -24.96 5.85 -55.06 -0.32 -25.28 16 12 C 0.33 8.18 7.35 133.11 0.98 9.15 16 13 N -0.50 -9.77 5.14 -192.78 -0.99 -10.76 16 14 C 0.09 1.15 9.81 84.61 0.83 1.98 16 15 C -0.14 -1.90 10.10 22.36 0.23 -1.68 16 16 C -0.14 -3.06 9.14 22.53 0.21 -2.85 16 17 C 0.04 1.20 6.72 22.70 0.15 1.35 16 18 O -0.33 -10.51 9.38 -93.62 -0.88 -11.39 16 19 C 0.09 3.07 4.70 71.98 0.34 3.41 16 20 C -0.01 -0.38 4.41 29.84 0.13 -0.25 16 21 C -0.53 -28.77 9.66 25.60 0.25 -28.52 16 22 H 0.05 2.62 7.99 -2.91 -0.02 2.60 16 23 C 0.01 0.80 5.47 84.65 0.46 1.26 16 24 N -0.94 -56.54 13.96 21.45 0.30 -56.24 16 25 Si 0.94 42.46 27.47 68.60 1.88 44.35 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.81 7.26 -2.39 -0.02 1.80 16 32 H 0.13 1.25 3.95 -2.39 -0.01 1.24 16 33 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.12 1.79 5.88 -2.39 -0.01 1.78 16 35 H 0.44 10.26 8.17 -96.74 -0.79 9.47 16 36 H 0.22 0.57 7.20 -2.91 -0.02 0.55 16 37 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.15 3.09 6.44 -2.91 -0.02 3.07 16 39 H 0.06 2.15 7.70 -2.39 -0.02 2.13 16 40 H 0.06 2.18 7.70 -2.38 -0.02 2.16 16 41 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 42 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 43 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -74.46 366.30 1.68 -72.77 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.25 Total: 14.21 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 5.51 Total: -31.18 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -1.61 Total: -102.94 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -4.03 Total: -64.04 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.35 kcal Atomic # 16 Polarization: 67.15 SS G_CDS: -0.31 Total: 66.84 kcal Total: -74.46 1.68 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069677364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.387 kcal (2) G-P(sol) polarization free energy of solvation -74.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds