Wall clock time and date at job start Tue Mar 31 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99646 * 2 1 4 4 H 1.48501 * 109.46911 * 239.99828 * 3 2 1 5 5 H 1.48501 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46578 * 120.00295 * 3 2 1 7 7 C 1.37879 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99606 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00319 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47383 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47615 * 180.02562 * 10 9 7 12 12 C 1.36010 * 117.00476 * 180.02562 * 11 10 9 13 13 C 1.38710 * 120.49404 * 0.21370 * 12 11 10 14 14 C 1.38848 * 118.45713 * 180.24502 * 13 12 11 15 15 C 1.38014 * 119.36742 * 359.52166 * 14 13 12 16 16 N 1.32012 * 120.95450 * 0.26070 * 15 14 13 17 17 C 1.32299 * 121.67947 * 359.97438 * 16 15 14 18 18 N 1.39251 * 119.73390 * 180.02562 * 17 16 15 19 19 S 1.65602 * 119.99844 * 0.02562 * 18 17 16 20 20 O 1.42104 * 106.39996 * 178.53643 * 19 18 17 21 21 O 1.42093 * 106.40323 * 311.45544 * 19 18 17 22 22 C 1.76196 * 107.21879 * 65.00235 * 19 18 17 23 23 C 1.38236 * 120.40509 * 269.72075 * 22 19 18 24 24 N 1.31843 * 120.82167 * 179.72449 * 23 22 19 25 25 C 1.31872 * 121.75118 * 0.53705 * 24 23 22 26 26 C 1.38422 * 120.72665 * 359.75504 * 25 24 23 27 27 F 1.35092 * 120.44465 * 179.97438 * 26 25 24 28 28 C 1.38595 * 120.40911 * 89.99806 * 22 19 18 29 29 H 0.97003 * 120.00473 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47111 * 60.00302 * 9 7 2 31 31 H 1.09000 * 109.46996 * 300.00335 * 9 7 2 32 32 H 1.09004 * 109.46789 * 60.00058 * 10 9 7 33 33 H 1.08998 * 109.47691 * 300.00760 * 10 9 7 34 34 H 1.07997 * 120.76905 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.31867 * 179.80730 * 14 13 12 36 36 H 1.08000 * 119.52038 * 180.23529 * 15 14 13 37 37 H 0.97000 * 120.00012 * 179.97438 * 18 17 16 38 38 H 1.08003 * 119.58828 * 0.02562 * 23 22 19 39 39 H 1.07995 * 119.63815 * 179.72391 * 25 24 23 40 40 H 1.07998 * 120.79753 * 359.97438 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5309 -4.8997 -0.0011 12 6 2.2716 -6.0403 -0.0007 13 6 3.6574 -5.9797 0.0048 14 6 4.3718 -7.1703 -0.0002 15 6 3.6886 -8.3695 -0.0003 16 7 2.3688 -8.3991 -0.0009 17 6 1.6489 -7.2892 -0.0009 18 7 0.2586 -7.3677 -0.0010 19 16 -0.4872 -8.8462 -0.0005 20 8 -1.8846 -8.5907 0.0341 21 8 0.1380 -9.6113 -1.0217 22 6 -0.0872 -9.6316 1.5252 23 6 1.0332 -10.4349 1.6260 24 7 1.3432 -11.0221 2.7650 25 6 0.5995 -10.8788 3.8445 26 6 -0.5408 -10.0946 3.8188 27 9 -1.2988 -9.9521 4.9280 28 6 -0.8953 -9.4561 2.6375 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5568 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8719 -3.6043 0.8895 33 1 2.8721 -3.6043 -0.8904 34 1 4.1688 -5.0285 0.0092 35 1 5.4517 -7.1582 0.0007 36 1 4.2418 -9.2971 -0.0003 37 1 -0.2729 -6.5563 -0.0007 38 1 1.6653 -10.5793 0.7622 39 1 0.8830 -11.3792 4.7586 40 1 -1.7790 -8.8374 2.5869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069677613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:28 Heat of formation + Delta-G solvation = -78.268716 kcal Electronic energy + Delta-G solvation = -30185.812793 eV Core-core repulsion = 25622.060160 eV Total energy + Delta-G solvation = -4563.752633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.083 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.41548 -40.80804 -40.43466 -38.11086 -37.44360 -36.11837 -35.52206 -33.53504 -33.18982 -31.88998 -31.42858 -30.54696 -29.04179 -25.52500 -24.86218 -24.14267 -23.58656 -23.10050 -21.04690 -19.97750 -18.98710 -18.63107 -17.85995 -17.83351 -17.61296 -17.32589 -16.36037 -16.28647 -16.23414 -16.01898 -15.79340 -15.40393 -14.94547 -14.64031 -14.37622 -14.23635 -14.13609 -13.94748 -13.72998 -13.15994 -13.01891 -12.61404 -12.44659 -12.36146 -12.21356 -12.12338 -12.08266 -11.95571 -11.68374 -11.15439 -11.01625 -10.80367 -10.73635 -10.14777 -10.11786 -9.97443 -9.78178 -9.59156 -9.52395 -9.43570 -8.55311 -7.96556 -6.20621 -4.26344 -0.17081 0.16265 0.49738 1.05097 1.19173 2.43226 2.95420 3.21533 3.24856 3.27455 3.32438 3.39598 3.45341 3.69016 3.84185 4.01060 4.06971 4.27988 4.30962 4.36627 4.45401 4.70645 4.78226 4.95740 5.00026 5.16081 5.20558 5.23354 5.39611 5.53972 5.77207 5.81486 5.99361 6.01315 6.03517 6.34261 6.45939 6.48432 7.17658 7.27652 7.47894 7.55932 7.67547 7.81861 8.10004 8.78605 9.38848 10.90652 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.002491 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.891813 B =11239.652453 C =11873.454255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.080 3.920 13 C -0.141 4.141 14 C -0.154 4.154 15 C 0.091 3.909 16 N -0.499 5.499 17 C 0.344 3.656 18 N -1.023 6.023 19 S 2.707 3.293 20 O -0.947 6.947 21 O -0.920 6.920 22 C -0.704 4.704 23 C 0.212 3.788 24 N -0.472 5.472 25 C 0.129 3.871 26 C 0.023 3.977 27 F -0.124 7.124 28 C -0.007 4.007 29 H 0.265 0.735 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.165 0.835 37 H 0.444 0.556 38 H 0.192 0.808 39 H 0.175 0.825 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 -21.491 4.865 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.009 4.009 11 O -0.224 6.224 12 C 0.026 3.974 13 C -0.168 4.168 14 C -0.175 4.175 15 C -0.064 4.064 16 N -0.216 5.216 17 C 0.110 3.890 18 N -0.776 5.776 19 S 2.793 3.207 20 O -0.937 6.937 21 O -0.910 6.910 22 C -0.791 4.791 23 C 0.054 3.946 24 N -0.180 5.180 25 C -0.029 4.029 26 C 0.000 4.000 27 F -0.103 7.103 28 C -0.035 4.035 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.182 0.818 37 H 0.283 0.717 38 H 0.209 0.791 39 H 0.192 0.808 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.727 -23.135 4.308 23.826 hybrid contribution 0.273 2.812 0.972 2.988 sum 3.999 -20.323 5.279 21.375 Atomic orbital electron populations 1.69950 1.06116 1.27285 1.49192 1.24981 0.94914 0.99429 0.94735 0.86537 0.79512 0.82524 0.78743 1.20044 1.21059 1.20077 1.20888 0.92994 0.90097 1.52916 0.92385 1.19133 0.94126 0.88838 0.99010 1.23454 0.97342 0.80180 0.99932 1.86137 1.36205 1.12883 1.87191 1.19506 0.90956 0.87328 0.99595 1.21728 0.92263 1.00644 1.02134 1.21859 1.01480 0.92224 1.01930 1.22169 0.87460 0.98435 0.98365 1.66933 1.09914 1.27122 1.17586 1.17169 0.83553 0.87943 1.00363 1.53239 1.11194 1.27604 1.85518 1.01935 0.72640 0.72442 0.73667 1.93647 1.28691 1.84419 1.86896 1.93626 1.76571 1.68650 1.52128 1.31941 1.07406 1.17414 1.22336 1.22990 0.90283 0.85365 0.95939 1.67995 1.29620 1.21375 0.99023 1.23355 0.88650 0.92593 0.98336 1.18720 0.94045 1.02834 0.84363 1.91564 1.74477 1.94446 1.49810 1.21445 0.97866 0.94239 0.89902 0.92510 0.95232 0.95321 0.92827 0.92738 0.83430 0.84279 0.81762 0.71654 0.79096 0.80769 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -13.91 9.11 -34.44 -0.31 -14.23 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.03 0.63 5.34 -27.89 -0.15 0.48 16 10 C 0.06 1.21 4.70 37.15 0.17 1.38 16 11 O -0.31 -5.38 9.38 -19.77 -0.19 -5.56 16 12 C 0.08 1.17 6.72 -38.92 -0.26 0.90 16 13 C -0.14 -1.74 9.14 -39.18 -0.36 -2.10 16 14 C -0.15 -1.49 10.10 -39.44 -0.40 -1.89 16 15 C 0.09 0.90 11.17 -17.56 -0.20 0.71 16 16 N -0.50 -6.11 6.35 -12.29 -0.08 -6.18 16 17 C 0.34 4.69 7.35 -154.71 -1.14 3.56 16 18 N -1.02 -12.92 5.85 31.24 0.18 -12.74 16 19 S 2.71 33.12 5.40 -107.50 -0.58 32.54 16 20 O -0.95 -13.12 17.36 -57.17 -0.99 -14.12 16 21 O -0.92 -13.01 16.18 -57.17 -0.92 -13.93 16 22 C -0.70 -7.73 5.79 -39.45 -0.23 -7.96 16 23 C 0.21 2.29 9.60 -17.55 -0.17 2.12 16 24 N -0.47 -4.93 10.36 -13.20 -0.14 -5.06 16 25 C 0.13 1.14 11.17 -17.47 -0.20 0.95 16 26 C 0.02 0.22 7.34 -39.28 -0.29 -0.07 16 27 F -0.12 -1.22 17.28 2.25 0.04 -1.18 16 28 C -0.01 -0.07 9.64 -39.21 -0.38 -0.45 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.94 7.69 -51.93 -0.40 0.54 16 33 H 0.05 0.96 7.71 -51.93 -0.40 0.56 16 34 H 0.15 1.71 6.44 -52.49 -0.34 1.37 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.44 5.31 8.17 -34.47 -0.28 5.03 16 38 H 0.19 1.93 6.60 -52.48 -0.35 1.59 16 39 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.17 1.44 7.71 -52.49 -0.40 1.04 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -32.83 365.77 -9.27 -42.10 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.83 Total: 2.85 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.99 Total: -15.01 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.70 Total: -48.60 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -2.10 Total: -33.61 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 33.12 SS G_CDS: -0.58 Total: 32.54 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.83 -9.27 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069677613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.167 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds