Wall clock time and date at job start Tue Mar 31 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99646 * 2 1 4 4 H 1.48501 * 109.46911 * 239.99828 * 3 2 1 5 5 H 1.48501 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46578 * 120.00295 * 3 2 1 7 7 C 1.37879 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99606 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00319 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47383 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47615 * 180.02562 * 10 9 7 12 12 C 1.36010 * 117.00476 * 180.02562 * 11 10 9 13 13 C 1.38710 * 120.49404 * 0.21370 * 12 11 10 14 14 C 1.38848 * 118.45713 * 180.24502 * 13 12 11 15 15 C 1.38014 * 119.36742 * 359.52166 * 14 13 12 16 16 N 1.32012 * 120.95450 * 0.26070 * 15 14 13 17 17 C 1.32299 * 121.67947 * 359.97438 * 16 15 14 18 18 N 1.39251 * 119.73390 * 180.02562 * 17 16 15 19 19 S 1.65602 * 119.99844 * 0.02562 * 18 17 16 20 20 O 1.42104 * 106.39996 * 178.53643 * 19 18 17 21 21 O 1.42093 * 106.40323 * 311.45544 * 19 18 17 22 22 C 1.76196 * 107.21879 * 65.00235 * 19 18 17 23 23 C 1.38236 * 120.40509 * 269.72075 * 22 19 18 24 24 N 1.31843 * 120.82167 * 179.72449 * 23 22 19 25 25 C 1.31872 * 121.75118 * 0.53705 * 24 23 22 26 26 C 1.38422 * 120.72665 * 359.75504 * 25 24 23 27 27 F 1.35092 * 120.44465 * 179.97438 * 26 25 24 28 28 C 1.38595 * 120.40911 * 89.99806 * 22 19 18 29 29 H 0.97003 * 120.00473 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47111 * 60.00302 * 9 7 2 31 31 H 1.09000 * 109.46996 * 300.00335 * 9 7 2 32 32 H 1.09004 * 109.46789 * 60.00058 * 10 9 7 33 33 H 1.08998 * 109.47691 * 300.00760 * 10 9 7 34 34 H 1.07997 * 120.76905 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.31867 * 179.80730 * 14 13 12 36 36 H 1.08000 * 119.52038 * 180.23529 * 15 14 13 37 37 H 0.97000 * 120.00012 * 179.97438 * 18 17 16 38 38 H 1.08003 * 119.58828 * 0.02562 * 23 22 19 39 39 H 1.07995 * 119.63815 * 179.72391 * 25 24 23 40 40 H 1.07998 * 120.79753 * 359.97438 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5309 -4.8997 -0.0011 12 6 2.2716 -6.0403 -0.0007 13 6 3.6574 -5.9797 0.0048 14 6 4.3718 -7.1703 -0.0002 15 6 3.6886 -8.3695 -0.0003 16 7 2.3688 -8.3991 -0.0009 17 6 1.6489 -7.2892 -0.0009 18 7 0.2586 -7.3677 -0.0010 19 16 -0.4872 -8.8462 -0.0005 20 8 -1.8846 -8.5907 0.0341 21 8 0.1380 -9.6113 -1.0217 22 6 -0.0872 -9.6316 1.5252 23 6 1.0332 -10.4349 1.6260 24 7 1.3432 -11.0221 2.7650 25 6 0.5995 -10.8788 3.8445 26 6 -0.5408 -10.0946 3.8188 27 9 -1.2988 -9.9521 4.9280 28 6 -0.8953 -9.4561 2.6375 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5568 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8719 -3.6043 0.8895 33 1 2.8721 -3.6043 -0.8904 34 1 4.1688 -5.0285 0.0092 35 1 5.4517 -7.1582 0.0007 36 1 4.2418 -9.2971 -0.0003 37 1 -0.2729 -6.5563 -0.0007 38 1 1.6653 -10.5793 0.7622 39 1 0.8830 -11.3792 4.7586 40 1 -1.7790 -8.8374 2.5869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069677613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:27 Heat of formation + Delta-G solvation = -100.816120 kcal Electronic energy + Delta-G solvation = -30186.790522 eV Core-core repulsion = 25622.060160 eV Total energy + Delta-G solvation = -4564.730362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.083 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.18193 -41.79229 -41.22374 -39.30358 -38.49998 -37.17485 -36.46592 -35.46905 -33.99159 -32.96455 -32.25150 -32.12716 -30.11282 -27.17772 -25.66996 -24.94146 -24.84163 -24.08269 -22.65149 -20.93085 -19.92095 -19.66841 -19.00097 -18.75122 -18.56143 -18.11704 -18.01563 -17.26978 -17.16973 -17.01461 -16.98412 -16.48567 -16.38939 -15.82552 -15.35792 -15.20384 -15.12739 -14.76152 -14.55159 -14.37990 -14.22643 -13.83945 -13.72827 -13.61183 -13.42541 -13.30424 -13.23179 -12.91365 -12.81184 -12.72965 -12.58241 -12.45372 -11.74403 -11.63654 -11.61698 -11.44662 -10.92985 -10.78450 -10.60995 -10.49948 -10.35745 -8.98317 -8.25835 -6.38916 -1.06249 -0.70215 -0.30039 0.14579 0.25453 1.42203 1.44984 1.49793 1.52933 2.11296 2.15468 2.41438 2.44590 2.63907 2.79142 3.06278 3.09442 3.11655 3.26593 3.49100 3.58545 3.67163 3.75040 3.87637 4.12947 4.16549 4.29638 4.33054 4.43137 4.49528 4.60705 4.68026 4.76329 5.09518 5.17789 5.25303 5.31363 5.46898 5.49703 5.54760 5.73329 6.07201 6.37144 6.39777 6.76346 6.77139 7.31468 8.86607 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.002491 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.891813 B =11239.652453 C =11873.454255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.027 3.973 10 C 0.084 3.916 11 O -0.332 6.332 12 C 0.043 3.957 13 C -0.142 4.142 14 C -0.142 4.142 15 C 0.098 3.902 16 N -0.507 5.507 17 C 0.329 3.671 18 N -1.027 6.027 19 S 2.723 3.277 20 O -0.969 6.969 21 O -0.941 6.941 22 C -0.708 4.708 23 C 0.210 3.790 24 N -0.480 5.480 25 C 0.139 3.861 26 C 0.019 3.981 27 F -0.125 7.125 28 C -0.017 4.017 29 H 0.266 0.734 30 H -0.001 1.001 31 H 0.000 1.000 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.205 0.795 37 H 0.443 0.557 38 H 0.197 0.803 39 H 0.210 0.790 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 -22.663 5.724 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.091 0.909 9 C -0.010 4.010 10 C 0.010 3.990 11 O -0.245 6.245 12 C -0.009 4.009 13 C -0.169 4.169 14 C -0.162 4.162 15 C -0.058 4.058 16 N -0.224 5.224 17 C 0.097 3.903 18 N -0.778 5.778 19 S 2.812 3.188 20 O -0.959 6.959 21 O -0.931 6.931 22 C -0.797 4.797 23 C 0.052 3.948 24 N -0.188 5.188 25 C -0.019 4.019 26 C -0.003 4.003 27 F -0.103 7.103 28 C -0.044 4.044 29 H 0.075 0.925 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.172 0.828 35 H 0.196 0.804 36 H 0.221 0.779 37 H 0.282 0.718 38 H 0.214 0.786 39 H 0.227 0.773 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.779 -24.317 5.140 25.762 hybrid contribution -0.608 2.988 0.766 3.144 sum 6.171 -21.329 5.906 22.976 Atomic orbital electron populations 1.70101 1.08002 1.28204 1.50669 1.25986 0.95736 1.03551 0.94316 0.85407 0.78150 0.77529 0.79417 1.18868 1.21188 1.18826 1.21380 0.93908 0.90996 1.51980 0.90908 1.18958 0.94619 0.91245 0.96170 1.22946 0.95487 0.79580 1.01036 1.86046 1.36793 1.13170 1.88486 1.19739 0.92091 0.86393 1.02652 1.21986 0.91349 1.02213 1.01364 1.22281 1.03304 0.90864 0.99781 1.22992 0.86814 1.00299 0.95703 1.67067 1.11102 1.26310 1.17888 1.17306 0.83802 0.88108 1.01081 1.53204 1.11319 1.27558 1.85737 1.01198 0.71848 0.71968 0.73752 1.93611 1.30124 1.84757 1.87449 1.93587 1.76796 1.69110 1.53625 1.31611 1.08250 1.18204 1.21651 1.23106 0.90093 0.85120 0.96447 1.68074 1.29985 1.21570 0.99202 1.23905 0.87595 0.91461 0.98979 1.18784 0.94435 1.03053 0.84064 1.91566 1.74568 1.94478 1.49706 1.21633 0.98132 0.94488 0.90135 0.92549 0.98224 0.98158 0.91543 0.91627 0.82772 0.80372 0.77870 0.71809 0.78645 0.77324 0.81022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.97 41.79 29.54 68.60 2.03 43.81 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.54 -28.88 9.11 25.60 0.23 -28.65 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.38 5.34 29.84 0.16 1.53 16 10 C 0.08 3.17 4.70 71.98 0.34 3.51 16 11 O -0.33 -11.82 9.38 -93.67 -0.88 -12.70 16 12 C 0.04 1.27 6.72 22.70 0.15 1.42 16 13 C -0.14 -3.24 9.14 22.53 0.21 -3.03 16 14 C -0.14 -2.23 10.10 22.36 0.23 -2.00 16 15 C 0.10 1.61 11.17 84.61 0.95 2.55 16 16 N -0.51 -11.62 6.35 -192.79 -1.22 -12.84 16 17 C 0.33 8.95 7.35 133.11 0.98 9.93 16 18 N -1.03 -27.03 5.85 -55.07 -0.32 -27.35 16 19 S 2.72 68.57 5.40 -56.49 -0.30 68.26 16 20 O -0.97 -28.08 17.36 -128.00 -2.22 -30.30 16 21 O -0.94 -26.94 16.18 -128.00 -2.07 -29.01 16 22 C -0.71 -15.34 5.79 22.35 0.13 -15.21 16 23 C 0.21 4.27 9.60 84.69 0.81 5.08 16 24 N -0.48 -9.01 10.36 -195.66 -2.03 -11.04 16 25 C 0.14 2.14 11.17 84.73 0.95 3.08 16 26 C 0.02 0.34 7.34 22.47 0.17 0.51 16 27 F -0.12 -2.27 17.28 44.97 0.78 -1.49 16 28 C -0.02 -0.33 9.64 22.51 0.22 -0.12 16 29 H 0.27 14.76 8.31 -92.71 -0.77 13.98 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.07 2.30 7.69 -2.39 -0.02 2.28 16 33 H 0.07 2.30 7.71 -2.39 -0.02 2.28 16 34 H 0.15 3.23 6.44 -2.91 -0.02 3.21 16 35 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 36 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.44 11.54 8.17 -96.74 -0.79 10.75 16 38 H 0.20 3.69 6.60 -2.91 -0.02 3.67 16 39 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.17 3.07 7.71 -2.91 -0.02 3.05 16 Total: -1.00 -72.71 365.77 0.34 -72.37 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.33 Total: 15.58 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 5.97 Total: -20.76 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -3.29 Total: -105.76 kcal Atomic # 8 Polarization: -66.84 SS G_CDS: -5.17 Total: -72.01 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.78 Total: -1.49 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 68.57 SS G_CDS: -0.30 Total: 68.26 kcal Total: -72.71 0.34 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069677613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.445 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds