Wall clock time and date at job start Tue Mar 31 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47263 * 275.40901 * 3 2 1 5 5 H 1.48501 * 109.47169 * 35.41754 * 3 2 1 6 6 H 1.48504 * 109.46965 * 155.41079 * 3 2 1 7 7 C 1.39936 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99844 * 341.74041 * 7 2 1 9 9 C 1.41430 * 119.99955 * 161.73154 * 7 2 1 10 10 C 1.40794 * 120.18132 * 330.18080 * 9 7 2 11 11 C 1.37704 * 120.03876 * 179.97438 * 10 9 7 12 12 C 1.38371 * 120.41702 * 359.78626 * 11 10 9 13 13 C 1.39883 * 120.35403 * 0.47112 * 12 11 10 14 14 C 1.47886 * 120.02017 * 179.78503 * 13 12 11 15 15 O 1.21547 * 119.99690 * 179.72033 * 14 13 12 16 16 N 1.34777 * 120.00437 * 359.72372 * 14 13 12 17 17 C 1.46502 * 120.00144 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.46877 * 179.97438 * 17 16 14 19 19 N 1.30681 * 125.85374 * 275.04038 * 18 17 16 20 20 C 1.33988 * 109.77989 * 179.97438 * 19 18 17 21 21 C 1.48393 * 125.65237 * 180.26612 * 20 19 18 22 22 C 1.39337 * 120.09481 * 359.43899 * 21 20 19 23 23 C 1.37981 * 119.90493 * 179.74685 * 22 21 20 24 24 C 1.38548 * 120.08950 * 0.55417 * 23 22 21 25 25 F 1.35111 * 119.90308 * 179.72157 * 24 23 22 26 26 C 1.38547 * 120.19182 * 359.70262 * 24 23 22 27 27 C 1.37965 * 120.09628 * 0.02562 * 26 24 23 28 28 N 1.31494 * 108.69083 * 0.02562 * 20 19 18 29 29 N 1.34514 * 125.85202 * 95.00750 * 18 17 16 30 30 H 0.97003 * 126.73730 * 0.04494 * 29 18 17 31 31 C 1.39025 * 119.95117 * 359.50775 * 13 12 11 32 32 H 0.97007 * 119.99993 * 0.02562 * 1 2 3 33 33 H 1.07996 * 119.97650 * 0.02562 * 10 9 7 34 34 H 1.08005 * 119.79006 * 180.02562 * 11 10 9 35 35 H 1.08004 * 119.82092 * 180.23453 * 12 11 10 36 36 H 0.97000 * 119.99488 * 0.02562 * 16 14 13 37 37 H 1.08996 * 109.46569 * 60.00102 * 17 16 14 38 38 H 1.09004 * 109.47094 * 300.00466 * 17 16 14 39 39 H 1.07998 * 120.05001 * 0.02831 * 22 21 20 40 40 H 1.08000 * 119.95565 * 180.25585 * 23 22 21 41 41 H 1.08006 * 119.94869 * 180.02562 * 26 24 23 42 42 H 1.08006 * 120.05154 * 180.02562 * 27 26 24 43 43 H 1.08001 * 120.20481 * 180.23274 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5923 1.4099 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2940 9 6 3.3688 -1.2429 -0.3834 10 6 3.8625 -0.3110 -1.3162 11 6 5.1882 -0.3435 -1.6875 12 6 6.0444 -1.2860 -1.1460 13 6 5.5708 -2.2232 -0.2219 14 6 6.4914 -3.2302 0.3486 15 8 6.0805 -4.0412 1.1554 16 7 7.7860 -3.2486 -0.0258 17 6 8.6980 -4.2459 0.5399 18 6 10.0757 -4.0522 -0.0392 19 7 10.5069 -4.5452 -1.1701 20 6 11.7778 -4.1721 -1.3721 21 6 12.6080 -4.5309 -2.5486 22 6 12.0791 -5.3315 -3.5589 23 6 12.8528 -5.6584 -4.6536 24 6 14.1575 -5.2011 -4.7436 25 9 14.9135 -5.5280 -5.8146 26 6 14.6891 -4.4091 -3.7387 27 6 13.9206 -4.0729 -2.6433 28 7 12.1659 -3.4312 -0.3574 29 7 11.0722 -3.3417 0.5189 30 1 11.0416 -2.8623 1.3617 31 6 4.2353 -2.2037 0.1640 32 1 -0.4850 0.8401 -0.0004 33 1 3.2013 0.4303 -1.7400 34 1 5.5627 0.3735 -2.4031 35 1 7.0832 -1.3004 -1.4412 36 1 8.1139 -2.6011 -0.6693 37 1 8.3392 -5.2458 0.2963 38 1 8.7387 -4.1281 1.6228 39 1 11.0636 -5.6921 -3.4874 40 1 12.4423 -6.2755 -5.4392 41 1 15.7065 -4.0544 -3.8131 42 1 14.3356 -3.4551 -1.8606 43 1 3.8661 -2.9231 0.8800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069698006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:41 Heat of formation + Delta-G solvation = 49.486038 kcal Electronic energy + Delta-G solvation = -29662.199195 eV Core-core repulsion = 25202.094230 eV Total energy + Delta-G solvation = -4460.104966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.123 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.32083 -42.61646 -39.61356 -39.26383 -37.44178 -35.14074 -33.77608 -33.43835 -32.32034 -31.56138 -30.89362 -30.23810 -29.96197 -27.30833 -25.21779 -24.27541 -23.50525 -22.97029 -21.59338 -20.97472 -20.74534 -20.23123 -18.74110 -18.08751 -17.85465 -16.70426 -16.51372 -16.41050 -16.32293 -16.00720 -15.63669 -15.49185 -15.10439 -14.75466 -14.68896 -14.16401 -14.00256 -13.73298 -13.66667 -13.48214 -13.23465 -12.94767 -12.84211 -12.80479 -12.67889 -12.37413 -12.07511 -11.68357 -11.51235 -11.12086 -10.86060 -10.85097 -10.63010 -10.54011 -10.37721 -10.08068 -9.80098 -9.59191 -9.56332 -9.25205 -9.17115 -8.85848 -7.95678 -7.83692 -7.06356 -4.61523 0.25686 0.79000 1.14407 1.79120 2.07252 2.34668 2.44806 3.00781 3.12664 3.18474 3.19993 3.31413 3.45402 3.50135 3.78698 3.87427 3.97210 4.18070 4.37945 4.41970 4.42598 4.80153 4.87709 5.06438 5.17920 5.26415 5.29638 5.43824 5.47292 5.59713 5.66657 5.71705 5.78843 5.93415 5.94102 5.97440 6.28984 6.31414 6.36586 6.52539 6.58559 6.60615 6.89782 7.12061 7.30925 7.41931 7.55066 7.56480 7.69155 7.88857 8.21945 8.44674 8.47808 8.64938 9.95561 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.001649 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.201209 B =16975.728992 C =17675.930975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.441 4.441 8 H 0.095 0.905 9 C 0.081 3.919 10 C -0.220 4.220 11 C -0.082 4.082 12 C -0.217 4.217 13 C -0.108 4.108 14 C 0.571 3.429 15 O -0.541 6.541 16 N -0.732 5.732 17 C 0.201 3.799 18 C 0.281 3.719 19 N -0.512 5.512 20 C 0.267 3.733 21 C -0.025 4.025 22 C -0.044 4.044 23 C -0.157 4.157 24 C 0.113 3.887 25 F -0.137 7.137 26 C -0.158 4.158 27 C -0.055 4.055 28 N -0.296 5.296 29 N -0.467 5.467 30 H 0.446 0.554 31 C -0.134 4.134 32 H 0.287 0.713 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.405 0.595 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.531 -5.634 -4.037 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.137 4.137 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.469 4.469 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.239 4.239 11 C -0.100 4.100 12 C -0.237 4.237 13 C -0.112 4.112 14 C 0.362 3.638 15 O -0.419 6.419 16 N -0.388 5.388 17 C 0.074 3.926 18 C 0.001 3.999 19 N -0.240 5.240 20 C -0.013 4.013 21 C -0.028 4.028 22 C -0.064 4.064 23 C -0.176 4.176 24 C 0.093 3.907 25 F -0.116 7.116 26 C -0.177 4.177 27 C -0.075 4.075 28 N -0.126 5.126 29 N -0.186 5.186 30 H 0.293 0.707 31 C -0.154 4.154 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.241 0.759 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 25.473 -6.066 -3.616 26.434 hybrid contribution 0.410 1.407 0.081 1.468 sum 25.883 -4.659 -3.535 26.536 Atomic orbital electron populations 1.69691 1.08100 1.30466 1.34170 1.26179 0.94768 1.01780 0.90946 0.86309 0.81337 0.79732 0.78913 1.19516 1.21594 1.16727 1.19530 0.92897 0.96359 1.38098 0.88752 1.17701 0.93171 0.91085 0.90233 1.21191 0.95670 1.04256 1.02813 1.20511 0.93731 0.97342 0.98458 1.20360 0.97912 1.00762 1.04623 1.19315 0.94127 0.96965 1.00755 1.18785 0.80698 0.83975 0.80374 1.90726 1.76399 1.40521 1.34238 1.45867 1.09438 1.35429 1.48055 1.19627 0.79552 0.95806 0.97608 1.24287 0.93512 0.91676 0.90406 1.70502 1.10437 1.27028 1.16057 1.22184 0.90085 0.94965 0.94054 1.17447 0.92536 1.01095 0.91706 1.21145 1.00507 0.93958 0.90826 1.21141 0.92751 1.03322 1.00348 1.17903 0.89836 0.98011 0.84968 1.91524 1.75607 1.90861 1.53579 1.21056 1.01684 1.00847 0.94118 1.21049 0.92013 0.97258 0.97195 1.78201 1.08031 1.23318 1.03048 1.48036 1.08879 1.40685 1.20999 0.70710 1.21267 0.90926 1.01915 1.01281 0.90242 0.87836 0.88258 0.88786 0.75889 0.87403 0.88881 0.83365 0.83923 0.84097 0.84073 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.59 13.93 55.55 0.77 -19.82 16 2 C 0.08 2.09 5.40 -17.34 -0.09 2.00 16 3 Si 0.91 19.78 24.52 -169.99 -4.17 15.61 16 4 H -0.27 -5.63 6.71 56.52 0.38 -5.25 16 5 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.24 -5.41 6.87 56.52 0.39 -5.02 16 7 C -0.44 -11.50 9.57 -37.73 -0.36 -11.86 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.08 1.97 5.10 -106.87 -0.55 1.43 16 10 C -0.22 -4.96 7.17 -38.81 -0.28 -5.24 16 11 C -0.08 -1.62 10.01 -39.73 -0.40 -2.02 16 12 C -0.22 -3.99 9.55 -38.92 -0.37 -4.36 16 13 C -0.11 -2.17 5.87 -105.04 -0.62 -2.79 16 14 C 0.57 10.08 7.77 -12.31 -0.10 9.98 16 15 O -0.54 -10.94 16.33 5.32 0.09 -10.85 16 16 N -0.73 -9.49 5.50 -62.42 -0.34 -9.83 16 17 C 0.20 2.05 6.30 -5.20 -0.03 2.02 16 18 C 0.28 2.80 7.59 -155.75 -1.18 1.62 16 19 N -0.51 -5.93 10.82 -8.56 -0.09 -6.02 16 20 C 0.27 2.95 7.77 -156.62 -1.22 1.74 16 21 C -0.02 -0.24 5.88 -104.89 -0.62 -0.85 16 22 C -0.04 -0.38 9.68 -39.27 -0.38 -0.76 16 23 C -0.16 -1.17 10.01 -39.56 -0.40 -1.57 16 24 C 0.11 0.90 7.30 -39.35 -0.29 0.61 16 25 F -0.14 -1.19 17.26 2.25 0.04 -1.15 16 26 C -0.16 -1.12 10.01 -39.57 -0.40 -1.52 16 27 C -0.06 -0.43 9.68 -39.27 -0.38 -0.81 16 28 N -0.30 -3.14 12.43 32.10 0.40 -2.74 16 29 N -0.47 -4.02 7.44 32.61 0.24 -3.78 16 30 H 0.45 2.44 8.96 -182.34 -1.63 0.81 16 31 C -0.13 -3.06 9.34 -38.44 -0.36 -3.42 16 32 H 0.29 6.65 8.30 -40.82 -0.34 6.32 16 33 H 0.10 2.32 4.72 -52.49 -0.25 2.08 16 34 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.09 1.41 6.38 -52.48 -0.33 1.08 16 36 H 0.40 4.86 6.48 -40.82 -0.26 4.59 16 37 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.15 1.22 7.83 -52.49 -0.41 0.81 16 40 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 42 H 0.14 0.98 7.83 -52.48 -0.41 0.56 16 43 H 0.12 2.70 7.64 -52.49 -0.40 2.30 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -30.10 379.56 -10.76 -40.86 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.41 Total: 7.80 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -8.01 Total: -15.80 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.98 Total: -42.19 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.17 Total: 15.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.10 -10.76 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069698006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.349 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds