Wall clock time and date at job start Tue Mar 31 2020 05:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47263 * 275.40901 * 3 2 1 5 5 H 1.48501 * 109.47169 * 35.41754 * 3 2 1 6 6 H 1.48504 * 109.46965 * 155.41079 * 3 2 1 7 7 C 1.39936 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99844 * 341.74041 * 7 2 1 9 9 C 1.41430 * 119.99955 * 161.73154 * 7 2 1 10 10 C 1.40794 * 120.18132 * 330.18080 * 9 7 2 11 11 C 1.37704 * 120.03876 * 179.97438 * 10 9 7 12 12 C 1.38371 * 120.41702 * 359.78626 * 11 10 9 13 13 C 1.39883 * 120.35403 * 0.47112 * 12 11 10 14 14 C 1.47886 * 120.02017 * 179.78503 * 13 12 11 15 15 O 1.21547 * 119.99690 * 179.72033 * 14 13 12 16 16 N 1.34777 * 120.00437 * 359.72372 * 14 13 12 17 17 C 1.46502 * 120.00144 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.46877 * 179.97438 * 17 16 14 19 19 N 1.30681 * 125.85374 * 275.04038 * 18 17 16 20 20 C 1.33988 * 109.77989 * 179.97438 * 19 18 17 21 21 C 1.48393 * 125.65237 * 180.26612 * 20 19 18 22 22 C 1.39337 * 120.09481 * 359.43899 * 21 20 19 23 23 C 1.37981 * 119.90493 * 179.74685 * 22 21 20 24 24 C 1.38548 * 120.08950 * 0.55417 * 23 22 21 25 25 F 1.35111 * 119.90308 * 179.72157 * 24 23 22 26 26 C 1.38547 * 120.19182 * 359.70262 * 24 23 22 27 27 C 1.37965 * 120.09628 * 0.02562 * 26 24 23 28 28 N 1.31494 * 108.69083 * 0.02562 * 20 19 18 29 29 N 1.34514 * 125.85202 * 95.00750 * 18 17 16 30 30 H 0.97003 * 126.73730 * 0.04494 * 29 18 17 31 31 C 1.39025 * 119.95117 * 359.50775 * 13 12 11 32 32 H 0.97007 * 119.99993 * 0.02562 * 1 2 3 33 33 H 1.07996 * 119.97650 * 0.02562 * 10 9 7 34 34 H 1.08005 * 119.79006 * 180.02562 * 11 10 9 35 35 H 1.08004 * 119.82092 * 180.23453 * 12 11 10 36 36 H 0.97000 * 119.99488 * 0.02562 * 16 14 13 37 37 H 1.08996 * 109.46569 * 60.00102 * 17 16 14 38 38 H 1.09004 * 109.47094 * 300.00466 * 17 16 14 39 39 H 1.07998 * 120.05001 * 0.02831 * 22 21 20 40 40 H 1.08000 * 119.95565 * 180.25585 * 23 22 21 41 41 H 1.08006 * 119.94869 * 180.02562 * 26 24 23 42 42 H 1.08006 * 120.05154 * 180.02562 * 27 26 24 43 43 H 1.08001 * 120.20481 * 180.23274 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5923 1.4099 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2940 9 6 3.3688 -1.2429 -0.3834 10 6 3.8625 -0.3110 -1.3162 11 6 5.1882 -0.3435 -1.6875 12 6 6.0444 -1.2860 -1.1460 13 6 5.5708 -2.2232 -0.2219 14 6 6.4914 -3.2302 0.3486 15 8 6.0805 -4.0412 1.1554 16 7 7.7860 -3.2486 -0.0258 17 6 8.6980 -4.2459 0.5399 18 6 10.0757 -4.0522 -0.0392 19 7 10.5069 -4.5452 -1.1701 20 6 11.7778 -4.1721 -1.3721 21 6 12.6080 -4.5309 -2.5486 22 6 12.0791 -5.3315 -3.5589 23 6 12.8528 -5.6584 -4.6536 24 6 14.1575 -5.2011 -4.7436 25 9 14.9135 -5.5280 -5.8146 26 6 14.6891 -4.4091 -3.7387 27 6 13.9206 -4.0729 -2.6433 28 7 12.1659 -3.4312 -0.3574 29 7 11.0722 -3.3417 0.5189 30 1 11.0416 -2.8623 1.3617 31 6 4.2353 -2.2037 0.1640 32 1 -0.4850 0.8401 -0.0004 33 1 3.2013 0.4303 -1.7400 34 1 5.5627 0.3735 -2.4031 35 1 7.0832 -1.3004 -1.4412 36 1 8.1139 -2.6011 -0.6693 37 1 8.3392 -5.2458 0.2963 38 1 8.7387 -4.1281 1.6228 39 1 11.0636 -5.6921 -3.4874 40 1 12.4423 -6.2755 -5.4392 41 1 15.7065 -4.0544 -3.8131 42 1 14.3356 -3.4551 -1.8606 43 1 3.8661 -2.9231 0.8800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069698006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:40 Heat of formation + Delta-G solvation = 31.525341 kcal Electronic energy + Delta-G solvation = -29662.978030 eV Core-core repulsion = 25202.094230 eV Total energy + Delta-G solvation = -4460.883800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.123 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.94428 -43.38551 -41.02789 -39.88131 -39.08294 -36.29613 -35.56043 -34.21075 -33.26267 -32.45753 -32.10806 -31.78657 -30.86831 -28.36614 -26.96659 -24.95779 -24.58581 -23.97176 -22.55772 -22.26927 -21.69444 -21.67373 -19.92325 -19.10518 -18.64532 -18.11665 -17.56392 -17.37429 -17.15105 -16.93565 -16.66429 -16.51621 -16.41179 -16.26570 -15.53699 -15.37639 -15.22080 -14.76124 -14.58088 -14.55180 -14.42143 -14.29041 -14.08935 -13.81614 -13.57369 -13.38103 -13.29282 -13.17007 -12.84065 -12.67055 -12.31714 -12.08304 -11.77260 -11.57575 -11.55370 -11.33378 -11.31696 -11.11368 -10.82428 -10.34986 -10.15462 -9.63013 -9.57166 -9.50416 -8.90975 -6.54536 -0.40076 0.16369 0.22622 0.37665 0.74344 1.26294 1.37170 1.41981 1.48550 1.58344 1.92259 2.12258 2.22252 2.56942 2.65173 2.69659 3.18858 3.26425 3.45438 3.46801 3.79000 3.85155 3.90561 4.20374 4.24165 4.25497 4.39389 4.42534 4.47617 4.60214 4.67446 4.88222 4.91843 4.92495 4.96275 4.97552 5.08505 5.12619 5.18248 5.27936 5.36567 5.42285 5.63208 5.71672 5.79050 5.85482 5.92557 6.08445 6.29999 6.41818 6.65694 6.75041 6.79380 7.11394 8.17747 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.001649 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.201209 B =16975.728992 C =17675.930975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.045 3.955 3 Si 0.967 3.033 4 H -0.250 1.250 5 H -0.278 1.278 6 H -0.250 1.250 7 C -0.487 4.487 8 H 0.052 0.948 9 C 0.065 3.935 10 C -0.224 4.224 11 C -0.084 4.084 12 C -0.183 4.183 13 C -0.112 4.112 14 C 0.575 3.425 15 O -0.572 6.572 16 N -0.710 5.710 17 C 0.203 3.797 18 C 0.283 3.717 19 N -0.532 5.532 20 C 0.258 3.742 21 C -0.042 4.042 22 C -0.050 4.050 23 C -0.155 4.155 24 C 0.103 3.897 25 F -0.142 7.142 26 C -0.153 4.153 27 C -0.055 4.055 28 N -0.305 5.305 29 N -0.452 5.452 30 H 0.460 0.540 31 C -0.161 4.161 32 H 0.295 0.705 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.413 0.587 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.150 0.850 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.830 -4.212 -5.287 30.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.170 4.170 3 Si 0.789 3.211 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.173 1.173 7 C -0.516 4.516 8 H 0.070 0.930 9 C 0.062 3.938 10 C -0.244 4.244 11 C -0.102 4.102 12 C -0.202 4.202 13 C -0.115 4.115 14 C 0.364 3.636 15 O -0.452 6.452 16 N -0.364 5.364 17 C 0.078 3.922 18 C 0.003 3.997 19 N -0.261 5.261 20 C -0.021 4.021 21 C -0.045 4.045 22 C -0.070 4.070 23 C -0.174 4.174 24 C 0.083 3.917 25 F -0.121 7.121 26 C -0.171 4.171 27 C -0.075 4.075 28 N -0.135 5.135 29 N -0.173 5.173 30 H 0.310 0.690 31 C -0.181 4.181 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.251 0.749 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.180 0.820 42 H 0.168 0.832 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 29.815 -4.639 -4.872 30.565 hybrid contribution -0.611 0.806 0.406 1.089 sum 29.204 -3.833 -4.467 29.792 Atomic orbital electron populations 1.69729 1.09314 1.31614 1.36721 1.26895 0.95406 1.04369 0.90288 0.85474 0.79657 0.76066 0.79906 1.17441 1.20493 1.17333 1.19466 0.94507 0.95736 1.41891 0.92989 1.17787 0.92553 0.92391 0.91046 1.21379 0.97327 1.03530 1.02152 1.21008 0.92400 0.98126 0.98649 1.20942 0.99972 0.97972 1.01349 1.19609 0.93407 0.97795 1.00683 1.18375 0.81833 0.83197 0.80197 1.90726 1.77272 1.41514 1.35670 1.45586 1.08069 1.35582 1.47197 1.19733 0.78975 0.94775 0.98732 1.24041 0.93405 0.91951 0.90277 1.70476 1.11012 1.27692 1.16928 1.22462 0.90093 0.95025 0.94566 1.17628 0.93180 1.02002 0.91721 1.21160 1.00616 0.94166 0.91047 1.21298 0.92588 1.03087 1.00387 1.18082 0.90061 0.98444 0.85123 1.91514 1.75730 1.90968 1.53867 1.21274 1.02516 0.99998 0.93333 1.21147 0.91507 0.97200 0.97609 1.78170 1.08633 1.23462 1.03225 1.47982 1.08048 1.40070 1.21216 0.69019 1.21210 0.92638 1.02132 1.02169 0.89474 0.87766 0.83917 0.83964 0.74875 0.87587 0.86632 0.83534 0.82381 0.82003 0.83231 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.06 13.93 21.82 0.30 -45.76 16 2 C 0.05 2.38 5.40 85.25 0.46 2.84 16 3 Si 0.97 40.80 24.52 68.60 1.68 42.48 16 4 H -0.25 -9.65 6.71 99.48 0.67 -8.98 16 5 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.25 -10.62 6.87 99.48 0.68 -9.94 16 7 C -0.49 -27.28 9.57 23.47 0.22 -27.05 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 9 C 0.06 3.23 5.10 -21.32 -0.11 3.12 16 10 C -0.22 -9.78 7.17 22.77 0.16 -9.61 16 11 C -0.08 -2.94 10.01 22.18 0.22 -2.71 16 12 C -0.18 -5.89 9.55 22.70 0.22 -5.68 16 13 C -0.11 -4.27 5.87 -20.14 -0.12 -4.39 16 14 C 0.57 19.10 7.77 86.80 0.67 19.77 16 15 O -0.57 -22.77 16.33 -3.86 -0.06 -22.84 16 16 N -0.71 -15.91 5.50 -469.67 -2.58 -18.49 16 17 C 0.20 3.54 6.30 85.63 0.54 4.08 16 18 C 0.28 4.80 7.59 138.24 1.05 5.85 16 19 N -0.53 -11.08 10.82 -181.01 -1.96 -13.04 16 20 C 0.26 5.16 7.77 137.46 1.07 6.23 16 21 C -0.04 -0.73 5.88 -20.04 -0.12 -0.85 16 22 C -0.05 -0.77 9.68 22.47 0.22 -0.55 16 23 C -0.16 -2.06 10.01 22.28 0.22 -1.83 16 24 C 0.10 1.44 7.30 22.42 0.16 1.61 16 25 F -0.14 -2.21 17.26 44.97 0.78 -1.43 16 26 C -0.15 -1.81 10.01 22.28 0.22 -1.59 16 27 C -0.05 -0.74 9.68 22.47 0.22 -0.53 16 28 N -0.30 -5.67 12.43 -52.36 -0.65 -6.32 16 29 N -0.45 -6.38 7.44 -50.74 -0.38 -6.76 16 30 H 0.46 3.47 8.96 -213.10 -1.91 1.56 16 31 C -0.16 -7.58 9.34 23.01 0.21 -7.36 16 32 H 0.29 14.29 8.30 -92.70 -0.77 13.52 16 33 H 0.10 4.50 4.72 -2.91 -0.01 4.49 16 34 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 35 H 0.14 3.27 6.38 -2.91 -0.02 3.25 16 36 H 0.41 7.89 6.48 -92.71 -0.60 7.29 16 37 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.15 2.25 7.83 -2.91 -0.02 2.23 16 40 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 41 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 42 H 0.15 1.73 7.83 -2.91 -0.02 1.71 16 43 H 0.10 4.76 7.64 -2.91 -0.02 4.74 16 Total: -1.00 -69.41 379.56 1.21 -68.20 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -1.46 Total: 22.61 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 5.53 Total: -18.65 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -5.27 Total: -90.37 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.84 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.68 Total: 42.48 kcal Total: -69.41 1.21 -68.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069698006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.730 kcal (2) G-P(sol) polarization free energy of solvation -69.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds