Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00041 * 2 1 4 4 C 1.53006 * 109.46778 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47169 * 65.00343 * 4 3 2 6 6 C 1.46497 * 119.99627 * 274.99678 * 5 4 3 7 7 C 1.50700 * 109.46954 * 274.99981 * 6 5 4 8 8 H 1.07996 * 120.00108 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99865 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99879 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99815 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47039 * 89.99671 * 11 9 7 13 13 H 1.48498 * 109.46799 * 209.99794 * 11 9 7 14 14 H 1.48503 * 109.47124 * 329.99470 * 11 9 7 15 15 S 1.65602 * 119.99894 * 94.99581 * 5 4 3 16 16 O 1.42095 * 106.40288 * 336.45765 * 15 5 4 17 17 O 1.42098 * 106.39880 * 203.53959 * 15 5 4 18 18 C 1.76201 * 107.21535 * 90.00198 * 15 5 4 19 19 C 1.38304 * 119.96718 * 270.01706 * 18 15 5 20 20 C 1.38253 * 120.13055 * 180.02562 * 19 18 15 21 21 C 1.38146 * 120.06202 * 0.02562 * 20 19 18 22 22 C 1.38794 * 119.93928 * 359.69677 * 21 20 19 23 23 N 1.40264 * 120.06736 * 180.30581 * 22 21 20 24 24 C 1.35065 * 127.38986 * 0.27272 * 23 22 21 25 25 N 1.30741 * 107.27457 * 179.97438 * 24 23 22 26 26 N 1.28426 * 110.64664 * 359.97438 * 25 24 23 27 27 N 1.28953 * 110.20164 * 359.73439 * 26 25 24 28 28 C 1.38105 * 119.96919 * 90.00159 * 18 15 5 29 29 H 1.08999 * 109.47246 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47234 * 300.00149 * 1 2 3 31 31 H 1.09006 * 109.47170 * 59.99678 * 1 2 3 32 32 H 1.08996 * 109.46836 * 60.00393 * 3 2 1 33 33 H 1.08994 * 109.47218 * 300.00092 * 3 2 1 34 34 H 1.08991 * 109.47245 * 304.99747 * 4 3 2 35 35 H 1.09009 * 109.46618 * 185.00100 * 4 3 2 36 36 H 1.09000 * 109.47570 * 35.00178 * 6 5 4 37 37 H 1.09004 * 109.46953 * 154.99944 * 6 5 4 38 38 H 0.96996 * 119.99876 * 180.02562 * 10 9 7 39 39 H 1.08001 * 119.93372 * 0.02562 * 19 18 15 40 40 H 1.07997 * 119.96821 * 180.02562 * 20 19 18 41 41 H 1.07999 * 120.02967 * 180.02562 * 21 20 19 42 42 H 1.07999 * 126.35905 * 359.95910 * 24 23 22 43 43 H 1.08002 * 120.02929 * 359.97438 * 28 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0014 -0.8955 -1.3758 7 6 5.3000 -1.4249 -0.8239 8 1 6.0333 -0.7426 -0.4201 9 6 5.5519 -2.7805 -0.8344 10 7 4.6587 -3.6115 -1.3257 11 14 7.1612 -3.4368 -0.1497 12 1 7.0007 -3.7295 1.2973 13 1 7.5337 -4.6817 -0.8683 14 1 8.2284 -2.4207 -0.3338 15 16 4.4474 1.5121 -2.5244 16 8 3.8196 2.7733 -2.3392 17 8 4.2786 0.7244 -3.6950 18 6 6.1794 1.7889 -2.3563 19 6 6.6384 2.8793 -1.6401 20 6 7.9967 3.1000 -1.5066 21 6 8.8995 2.2315 -2.0890 22 6 8.4418 1.1331 -2.8034 23 7 9.3561 0.2460 -3.3904 24 6 10.7045 0.3129 -3.3511 25 7 11.1638 -0.7092 -4.0247 26 7 10.1977 -1.4180 -4.4868 27 7 9.0654 -0.9075 -4.1400 28 6 7.0772 0.9165 -2.9396 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8507 0.5685 0.8426 35 1 3.9785 2.1765 0.0902 36 1 3.1684 -1.3222 -0.8172 37 1 3.9137 -1.1718 -2.4266 38 1 4.8357 -4.5651 -1.3328 39 1 5.9345 3.5598 -1.1843 40 1 8.3523 3.9521 -0.9464 41 1 9.9604 2.4041 -1.9839 42 1 11.2938 1.0702 -2.8555 43 1 6.7181 0.0647 -3.4982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069738197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = 18.786327 kcal Electronic energy + Delta-G solvation = -32029.709945 eV Core-core repulsion = 27625.918991 eV Total energy + Delta-G solvation = -4403.790954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.115 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.36776 -40.60145 -39.05300 -38.37069 -37.01982 -36.92282 -36.31505 -34.59507 -33.57532 -32.44064 -31.34419 -31.03861 -28.50691 -26.97592 -26.32336 -25.39803 -24.62510 -23.52529 -23.21802 -23.05642 -20.67318 -19.45747 -18.71391 -18.41878 -17.79695 -17.71314 -17.64780 -17.41035 -17.05142 -16.90203 -16.64463 -16.45355 -16.03376 -15.77571 -15.11124 -15.02367 -14.71706 -14.54153 -14.39789 -13.93518 -13.82328 -13.56232 -13.47412 -13.34833 -13.28759 -13.24081 -12.99855 -12.86367 -12.85536 -12.80022 -12.57756 -12.33771 -12.21680 -12.07771 -11.99305 -11.75664 -11.72874 -11.68328 -10.62706 -10.55635 -10.46433 -9.90592 -9.74527 -8.19704 -6.30381 -0.84013 -0.63107 -0.28003 0.43261 0.66295 1.11456 1.27560 1.30975 1.37140 1.93666 2.30618 2.37526 2.73174 2.91439 3.02397 3.14353 3.23545 3.30812 3.61242 3.73430 3.85826 3.92700 3.99802 4.12802 4.22707 4.26726 4.32380 4.43991 4.52782 4.58338 4.61047 4.62154 4.83497 4.86893 4.91943 4.99177 5.01200 5.11590 5.20409 5.41648 5.57923 5.66329 5.73907 5.92151 6.10131 6.43600 6.81790 7.18284 7.37873 8.88667 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.009547 B = 0.004489 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.021176 B = 6236.330474 C = 8085.990088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.038 3.962 4 C 0.121 3.879 5 N -0.977 5.977 6 C 0.265 3.735 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.018 3.982 10 N -0.922 5.922 11 Si 0.943 3.057 12 H -0.262 1.262 13 H -0.294 1.294 14 H -0.277 1.277 15 S 2.689 3.311 16 O -0.967 6.967 17 O -1.001 7.001 18 C -0.660 4.660 19 C -0.015 4.015 20 C -0.098 4.098 21 C -0.049 4.049 22 C 0.083 3.917 23 N -0.327 5.327 24 C 0.244 3.756 25 N -0.356 5.356 26 N -0.064 5.064 27 N -0.115 5.115 28 C -0.017 4.017 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.042 0.958 37 H 0.008 0.992 38 H 0.263 0.737 39 H 0.176 0.824 40 H 0.206 0.794 41 H 0.200 0.800 42 H 0.309 0.691 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 20.992 6.800 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.040 4.040 4 C -0.004 4.004 5 N -0.815 5.815 6 C 0.142 3.858 7 C -0.572 4.572 8 H 0.086 0.914 9 C -0.182 4.182 10 N -0.562 5.562 11 Si 0.770 3.230 12 H -0.187 1.187 13 H -0.221 1.221 14 H -0.202 1.202 15 S 2.782 3.218 16 O -0.957 6.957 17 O -0.992 6.992 18 C -0.749 4.749 19 C -0.034 4.034 20 C -0.117 4.117 21 C -0.070 4.070 22 C -0.009 4.009 23 N -0.117 5.117 24 C -0.051 4.051 25 N -0.205 5.205 26 N -0.059 5.059 27 N -0.100 5.100 28 C -0.039 4.039 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.072 0.928 39 H 0.193 0.807 40 H 0.223 0.777 41 H 0.217 0.783 42 H 0.324 0.676 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.914 19.698 5.301 21.239 hybrid contribution 0.590 -0.780 0.442 1.073 sum 6.503 18.918 5.743 20.813 Atomic orbital electron populations 1.22871 0.80492 1.03042 1.00717 1.88050 1.20730 1.28714 1.95483 1.23237 0.94424 0.84741 1.01616 1.21574 0.92718 0.99437 0.86711 1.57174 1.78482 1.17229 1.28654 1.18754 0.96999 0.73873 0.96204 1.21801 1.03252 0.92139 1.40026 0.91394 1.25609 0.99158 0.97577 0.95840 1.70044 1.36159 1.03371 1.46660 0.85797 0.80553 0.77615 0.79084 1.18732 1.22067 1.20192 1.01716 0.74642 0.72429 0.73043 1.93508 1.74311 1.41510 1.86374 1.93524 1.86310 1.71009 1.48328 1.30833 1.25333 1.05913 1.12835 1.21627 0.99159 0.92114 0.90550 1.21790 0.90810 1.00446 0.98646 1.21824 1.04306 0.89130 0.91690 1.17938 0.87457 0.93030 1.02469 1.49150 1.07602 1.18657 1.36308 1.28660 0.81266 0.99104 0.96030 1.74341 1.24892 1.05751 1.15543 1.78087 0.93048 1.19916 1.14802 1.82885 1.19282 0.96426 1.11436 1.20496 0.92116 0.96632 0.94617 0.90002 0.91954 0.94064 0.89029 0.93656 0.89363 0.85868 0.93974 0.97350 0.92805 0.80699 0.77745 0.78308 0.67650 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -14.49 9.02 -148.98 -1.34 -15.84 16 3 C 0.04 1.09 6.28 71.98 0.45 1.54 16 4 C 0.12 3.64 5.79 86.38 0.50 4.14 16 5 N -0.98 -38.85 2.75 -519.83 -1.43 -40.29 16 6 C 0.27 13.69 5.27 85.63 0.45 14.14 16 7 C -0.53 -28.58 9.38 25.60 0.24 -28.34 16 8 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.02 1.02 5.46 84.66 0.46 1.48 16 10 N -0.92 -56.30 13.29 21.45 0.28 -56.01 16 11 Si 0.94 45.55 29.54 68.60 2.03 47.57 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 S 2.69 102.06 5.65 -56.49 -0.32 101.74 16 16 O -0.97 -33.15 16.25 -128.00 -2.08 -35.23 16 17 O -1.00 -48.36 15.83 -128.00 -2.03 -50.39 16 18 C -0.66 -20.48 5.97 22.25 0.13 -20.35 16 19 C -0.01 -0.28 9.52 22.29 0.21 -0.07 16 20 C -0.10 -1.07 10.04 22.25 0.22 -0.85 16 21 C -0.05 -0.64 9.49 22.38 0.21 -0.43 16 22 C 0.08 2.22 6.70 38.07 0.26 2.47 16 23 N -0.33 -9.54 3.85 -191.06 -0.74 -10.27 16 24 C 0.24 4.90 12.16 180.19 2.19 7.09 16 25 N -0.36 -10.52 12.15 -60.13 -0.73 -11.25 16 26 N -0.06 -2.41 13.39 37.02 0.50 -1.92 16 27 N -0.11 -4.58 13.34 37.02 0.49 -4.08 16 28 C -0.02 -0.60 9.17 22.38 0.21 -0.39 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 2.76 8.11 -2.39 -0.02 2.74 16 35 H 0.12 2.58 7.61 -2.38 -0.02 2.57 16 36 H 0.04 2.34 6.60 -2.39 -0.02 2.32 16 37 H 0.01 0.50 6.91 -2.39 -0.02 0.49 16 38 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.18 2.34 7.61 -2.91 -0.02 2.31 16 40 H 0.21 -0.01 8.06 -2.91 -0.02 -0.03 16 41 H 0.20 0.14 6.88 -2.91 -0.02 0.12 16 42 H 0.31 0.82 7.19 -2.91 -0.02 0.80 16 43 H 0.11 5.06 7.33 -2.91 -0.02 5.04 16 Total: -1.00 -91.71 385.77 2.47 -89.24 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.05 Total: 4.38 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 6.79 Total: -17.65 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -1.62 Total: -123.83 kcal Atomic # 8 Polarization: -96.01 SS G_CDS: -5.45 Total: -101.46 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 102.06 SS G_CDS: -0.32 Total: 101.74 kcal Total: -91.71 2.47 -89.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069738197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.029 kcal (2) G-P(sol) polarization free energy of solvation -91.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds