Wall clock time and date at job start Tue Mar 31 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.47115 * 269.99682 * 3 2 1 5 5 H 1.48503 * 109.47130 * 29.99701 * 3 2 1 6 6 H 1.48502 * 109.47389 * 150.00043 * 3 2 1 7 7 C 1.37879 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00105 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00265 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00339 * 89.99761 * 10 9 7 12 12 C 1.50703 * 109.47014 * 270.00152 * 11 10 9 13 13 C 1.38227 * 119.61735 * 94.97523 * 12 11 10 14 14 C 1.38625 * 119.16202 * 179.79002 * 13 12 11 15 15 C 1.38683 * 118.42030 * 0.47568 * 14 13 12 16 16 C 1.38183 * 119.15756 * 359.50276 * 15 14 13 17 17 N 1.31849 * 119.61933 * 274.99637 * 12 11 10 18 18 C 1.34780 * 120.00074 * 269.99554 * 10 9 7 19 19 O 1.21694 * 120.00381 * 179.97438 * 18 10 9 20 20 C 1.46424 * 119.99856 * 0.02562 * 18 10 9 21 21 C 1.34808 * 120.00372 * 179.97438 * 20 18 10 22 22 C 1.47204 * 120.00489 * 179.97438 * 21 20 18 23 23 C 1.39854 * 120.16996 * 342.86604 * 22 21 20 24 24 C 1.37872 * 119.83104 * 179.97438 * 23 22 21 25 25 C 1.38427 * 120.16576 * 0.02562 * 24 23 22 26 26 C 1.38382 * 120.34783 * 359.97438 * 25 24 23 27 27 C 1.37915 * 120.16943 * 359.71823 * 26 25 24 28 28 N 1.48016 * 120.08841 * 180.27910 * 27 26 25 29 29 O 1.21802 * 119.99970 * 7.43033 * 28 27 26 30 30 O 1.21800 * 120.00259 * 187.42521 * 28 27 26 31 31 H 0.96995 * 120.00178 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.47362 * 59.99571 * 9 7 2 33 33 H 1.09007 * 109.46855 * 299.99735 * 9 7 2 34 34 H 1.08996 * 109.47771 * 150.00324 * 11 10 9 35 35 H 1.08997 * 109.47001 * 30.00054 * 11 10 9 36 36 H 1.08004 * 120.42401 * 359.97438 * 13 12 11 37 37 H 1.08001 * 120.79509 * 180.23328 * 14 13 12 38 38 H 1.08001 * 120.41940 * 179.78267 * 15 14 13 39 39 H 1.07997 * 119.61327 * 180.25398 * 16 15 14 40 40 H 1.08004 * 119.99887 * 359.97438 * 20 18 10 41 41 H 1.08004 * 119.99741 * 359.97438 * 21 20 18 42 42 H 1.08003 * 120.08813 * 359.97438 * 23 22 21 43 43 H 1.07994 * 119.91904 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.82431 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.91318 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5751 0.0022 11 6 4.2446 -3.2667 -1.2659 12 6 2.9890 -3.9775 -1.7009 13 6 2.1235 -3.3574 -2.5825 14 6 0.9734 -4.0217 -2.9797 15 6 0.7306 -5.2864 -2.4653 16 6 1.6419 -5.8428 -1.5881 17 7 2.7284 -5.1834 -1.2357 18 6 4.2243 -3.2097 1.1700 19 8 4.6296 -4.3572 1.1710 20 6 3.9793 -2.5188 2.4375 21 6 4.2031 -3.1535 3.6055 22 6 3.9573 -2.4587 4.8798 23 6 3.8429 -1.0652 4.9098 24 6 3.6121 -0.4217 6.1071 25 6 3.4943 -1.1513 7.2776 26 6 3.6063 -2.5304 7.2561 27 6 3.8307 -3.1891 6.0653 28 7 3.9441 -4.6647 6.0435 29 8 3.7058 -5.3088 7.0495 30 8 4.2756 -5.2350 5.0196 31 1 -0.4850 0.8400 -0.0004 32 1 3.8746 -0.6799 0.8911 33 1 3.8752 -0.6804 -0.8889 34 1 5.0465 -3.9932 -1.1348 35 1 4.5330 -2.5406 -2.0259 36 1 2.3420 -2.3692 -2.9595 37 1 0.2809 -3.5635 -3.6704 38 1 -0.1572 -5.8315 -2.7501 39 1 1.4622 -6.8290 -1.1863 40 1 3.6192 -1.5005 2.4366 41 1 4.5628 -4.1719 3.6064 42 1 3.9350 -0.4945 3.9975 43 1 3.5240 0.6544 6.1320 44 1 3.3140 -0.6415 8.2124 45 1 3.5127 -3.0927 8.1733 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069769606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:43 Heat of formation + Delta-G solvation = 63.514530 kcal Electronic energy + Delta-G solvation = -32574.596931 eV Core-core repulsion = 28140.841929 eV Total energy + Delta-G solvation = -4433.755002 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.14148 -39.91672 -39.53564 -38.79878 -36.58764 -35.32302 -34.11057 -32.77379 -32.15065 -31.93765 -31.39161 -29.94939 -28.27208 -26.84257 -26.10741 -24.19119 -23.03673 -22.77566 -22.42651 -21.91281 -20.70790 -19.06295 -18.49424 -18.08816 -17.44249 -17.25221 -17.12643 -16.34911 -16.16765 -15.76679 -15.59319 -15.15788 -15.15060 -14.73655 -14.39109 -13.96303 -13.80064 -13.59405 -13.34387 -13.02158 -12.85713 -12.66798 -12.57432 -12.50455 -12.23211 -11.93884 -11.75903 -11.62284 -11.33692 -11.31265 -11.06395 -11.04732 -10.78165 -10.54774 -10.41567 -10.20010 -9.76641 -9.73006 -9.38042 -9.23863 -8.91520 -8.83332 -8.56618 -8.47478 -7.82930 -6.29997 -4.31649 -0.30559 0.50272 1.33271 1.44605 1.58218 1.84217 1.93941 3.04720 3.11410 3.15593 3.21809 3.59934 3.96314 4.14646 4.20511 4.24707 4.46151 4.51545 4.68659 4.77924 4.79714 4.97388 5.00248 5.20142 5.28248 5.29141 5.42957 5.52632 5.54475 5.61877 5.68455 5.71746 5.83337 5.90738 5.97236 6.08750 6.17182 6.24835 6.29504 6.38703 6.43788 6.53156 6.62214 6.68934 6.82457 7.19254 7.22587 7.32752 7.75162 8.01165 8.30818 8.57372 8.77503 8.86666 9.28098 10.82379 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008160 B = 0.003623 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.700043 B = 7725.563154 C =10002.443398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.535 4.535 8 H 0.079 0.921 9 C 0.205 3.795 10 N -0.582 5.582 11 C 0.172 3.828 12 C 0.119 3.881 13 C -0.128 4.128 14 C -0.079 4.079 15 C -0.178 4.178 16 C 0.087 3.913 17 N -0.460 5.460 18 C 0.544 3.456 19 O -0.533 6.533 20 C -0.130 4.130 21 C -0.112 4.112 22 C 0.024 3.976 23 C -0.112 4.112 24 C -0.064 4.064 25 C -0.125 4.125 26 C -0.055 4.055 27 C -0.043 4.043 28 N 0.033 4.967 29 O -0.169 6.169 30 O -0.148 6.148 31 H 0.266 0.734 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.178 0.822 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 0.857 5.991 8.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.693 3.307 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.097 0.903 9 C 0.084 3.916 10 N -0.313 5.313 11 C 0.048 3.952 12 C -0.021 4.021 13 C -0.149 4.149 14 C -0.105 4.105 15 C -0.198 4.198 16 C -0.070 4.070 17 N -0.169 5.169 18 C 0.333 3.667 19 O -0.411 6.411 20 C -0.151 4.151 21 C -0.131 4.131 22 C 0.023 3.977 23 C -0.131 4.131 24 C -0.082 4.082 25 C -0.144 4.144 26 C -0.074 4.074 27 C -0.126 4.126 28 N 0.550 4.450 29 O -0.382 6.382 30 O -0.363 6.363 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.194 0.806 42 H 0.170 0.830 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.889 0.708 6.569 9.546 hybrid contribution -0.889 1.297 -0.613 1.688 sum 6.000 2.005 5.956 8.689 Atomic orbital electron populations 1.69895 1.06183 1.27050 1.49333 1.24873 0.94661 0.98618 0.94489 0.87019 0.80311 0.84293 0.79105 1.19835 1.20950 1.18920 1.21377 0.88844 0.95011 1.52116 0.90295 1.19930 0.96205 0.77883 0.97613 1.47747 1.64127 1.15266 1.04117 1.20127 0.93456 0.95597 0.85974 1.21524 0.97127 0.90698 0.92712 1.21909 0.94749 1.00108 0.98098 1.21474 0.96448 0.94224 0.98394 1.22039 1.00754 0.96957 1.00053 1.22628 0.90198 0.99448 0.94741 1.67535 1.19554 1.08263 1.21555 1.18077 0.78441 0.85954 0.84255 1.90811 1.46010 1.16792 1.87510 1.23516 0.97975 1.00941 0.92622 1.23237 0.98587 1.02294 0.88969 1.19023 0.93404 0.93353 0.91962 1.21647 0.99477 0.92120 0.99832 1.21571 0.93328 1.01372 0.91912 1.21252 1.01311 0.92282 0.99570 1.20960 0.94627 0.95214 0.96574 1.21213 1.15344 0.79416 0.96659 1.43596 0.97763 1.03416 1.00228 1.94499 1.53229 1.65910 1.24580 1.94465 1.49064 1.71905 1.20877 0.92415 0.94833 0.95001 0.88899 0.89391 0.84878 0.85430 0.85631 0.83563 0.84525 0.80560 0.83010 0.83797 0.83695 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 13.96 55.43 0.77 -23.75 16 2 C 0.08 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 18.20 27.47 -169.99 -4.67 13.53 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.09 6.54 56.52 0.37 -4.72 16 7 C -0.54 -13.14 9.79 -34.44 -0.34 -13.48 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.20 4.17 3.98 -5.20 -0.02 4.15 16 10 N -0.58 -11.58 2.44 -178.08 -0.43 -12.01 16 11 C 0.17 3.10 5.76 -5.19 -0.03 3.07 16 12 C 0.12 2.28 6.36 -82.59 -0.53 1.75 16 13 C -0.13 -2.30 9.57 -39.44 -0.38 -2.68 16 14 C -0.08 -1.30 10.18 -39.27 -0.40 -1.70 16 15 C -0.18 -2.79 10.11 -39.44 -0.40 -3.19 16 16 C 0.09 1.51 11.18 -17.55 -0.20 1.32 16 17 N -0.46 -9.28 10.27 -9.47 -0.10 -9.38 16 18 C 0.54 11.31 7.60 -12.96 -0.10 11.21 16 19 O -0.53 -12.23 15.81 5.19 0.08 -12.15 16 20 C -0.13 -2.39 8.55 -37.50 -0.32 -2.71 16 21 C -0.11 -1.93 8.65 -37.16 -0.32 -2.25 16 22 C 0.02 0.35 5.83 -105.06 -0.61 -0.26 16 23 C -0.11 -1.34 9.34 -39.11 -0.37 -1.70 16 24 C -0.06 -0.57 10.03 -39.65 -0.40 -0.97 16 25 C -0.13 -1.04 10.04 -39.46 -0.40 -1.43 16 26 C -0.05 -0.58 9.55 -39.65 -0.38 -0.96 16 27 C -0.04 -0.61 6.87 -79.47 -0.55 -1.15 16 28 N 0.03 0.54 4.45 34.19 0.15 0.69 16 29 O -0.17 -2.70 18.47 -29.46 -0.54 -3.25 16 30 O -0.15 -2.71 15.31 -29.46 -0.45 -3.17 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.03 0.65 5.15 -51.93 -0.27 0.39 16 33 H 0.03 0.61 7.32 -51.92 -0.38 0.23 16 34 H 0.09 1.67 7.42 -51.93 -0.39 1.28 16 35 H 0.09 1.30 7.79 -51.93 -0.40 0.90 16 36 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 37 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.15 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.14 2.38 4.55 -52.48 -0.24 2.14 16 41 H 0.18 3.35 4.49 -52.57 -0.24 3.11 16 42 H 0.15 1.70 6.51 -52.48 -0.34 1.36 16 43 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.15 1.32 7.63 -52.49 -0.40 0.92 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -32.95 393.39 -9.86 -42.82 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -4.78 Total: 9.86 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -5.82 Total: -9.13 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.39 Total: -44.44 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.91 Total: -18.57 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -4.67 Total: 13.53 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.95 -9.86 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069769606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.331 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds