Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.47115 * 269.99682 * 3 2 1 5 5 H 1.48503 * 109.47130 * 29.99701 * 3 2 1 6 6 H 1.48502 * 109.47389 * 150.00043 * 3 2 1 7 7 C 1.37879 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00105 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00265 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00339 * 89.99761 * 10 9 7 12 12 C 1.50703 * 109.47014 * 270.00152 * 11 10 9 13 13 C 1.38227 * 119.61735 * 94.97523 * 12 11 10 14 14 C 1.38625 * 119.16202 * 179.79002 * 13 12 11 15 15 C 1.38683 * 118.42030 * 0.47568 * 14 13 12 16 16 C 1.38183 * 119.15756 * 359.50276 * 15 14 13 17 17 N 1.31849 * 119.61933 * 274.99637 * 12 11 10 18 18 C 1.34780 * 120.00074 * 269.99554 * 10 9 7 19 19 O 1.21694 * 120.00381 * 179.97438 * 18 10 9 20 20 C 1.46424 * 119.99856 * 0.02562 * 18 10 9 21 21 C 1.34808 * 120.00372 * 179.97438 * 20 18 10 22 22 C 1.47204 * 120.00489 * 179.97438 * 21 20 18 23 23 C 1.39854 * 120.16996 * 342.86604 * 22 21 20 24 24 C 1.37872 * 119.83104 * 179.97438 * 23 22 21 25 25 C 1.38427 * 120.16576 * 0.02562 * 24 23 22 26 26 C 1.38382 * 120.34783 * 359.97438 * 25 24 23 27 27 C 1.37915 * 120.16943 * 359.71823 * 26 25 24 28 28 N 1.48016 * 120.08841 * 180.27910 * 27 26 25 29 29 O 1.21802 * 119.99970 * 7.43033 * 28 27 26 30 30 O 1.21800 * 120.00259 * 187.42521 * 28 27 26 31 31 H 0.96995 * 120.00178 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.47362 * 59.99571 * 9 7 2 33 33 H 1.09007 * 109.46855 * 299.99735 * 9 7 2 34 34 H 1.08996 * 109.47771 * 150.00324 * 11 10 9 35 35 H 1.08997 * 109.47001 * 30.00054 * 11 10 9 36 36 H 1.08004 * 120.42401 * 359.97438 * 13 12 11 37 37 H 1.08001 * 120.79509 * 180.23328 * 14 13 12 38 38 H 1.08001 * 120.41940 * 179.78267 * 15 14 13 39 39 H 1.07997 * 119.61327 * 180.25398 * 16 15 14 40 40 H 1.08004 * 119.99887 * 359.97438 * 20 18 10 41 41 H 1.08004 * 119.99741 * 359.97438 * 21 20 18 42 42 H 1.08003 * 120.08813 * 359.97438 * 23 22 21 43 43 H 1.07994 * 119.91904 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.82431 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.91318 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5751 0.0022 11 6 4.2446 -3.2667 -1.2659 12 6 2.9890 -3.9775 -1.7009 13 6 2.1235 -3.3574 -2.5825 14 6 0.9734 -4.0217 -2.9797 15 6 0.7306 -5.2864 -2.4653 16 6 1.6419 -5.8428 -1.5881 17 7 2.7284 -5.1834 -1.2357 18 6 4.2243 -3.2097 1.1700 19 8 4.6296 -4.3572 1.1710 20 6 3.9793 -2.5188 2.4375 21 6 4.2031 -3.1535 3.6055 22 6 3.9573 -2.4587 4.8798 23 6 3.8429 -1.0652 4.9098 24 6 3.6121 -0.4217 6.1071 25 6 3.4943 -1.1513 7.2776 26 6 3.6063 -2.5304 7.2561 27 6 3.8307 -3.1891 6.0653 28 7 3.9441 -4.6647 6.0435 29 8 3.7058 -5.3088 7.0495 30 8 4.2756 -5.2350 5.0196 31 1 -0.4850 0.8400 -0.0004 32 1 3.8746 -0.6799 0.8911 33 1 3.8752 -0.6804 -0.8889 34 1 5.0465 -3.9932 -1.1348 35 1 4.5330 -2.5406 -2.0259 36 1 2.3420 -2.3692 -2.9595 37 1 0.2809 -3.5635 -3.6704 38 1 -0.1572 -5.8315 -2.7501 39 1 1.4622 -6.8290 -1.1863 40 1 3.6192 -1.5005 2.4366 41 1 4.5628 -4.1719 3.6064 42 1 3.9350 -0.4945 3.9975 43 1 3.5240 0.6544 6.1320 44 1 3.3140 -0.6415 8.2124 45 1 3.5127 -3.0927 8.1733 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069769606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = 44.831831 kcal Electronic energy + Delta-G solvation = -32575.407073 eV Core-core repulsion = 28140.841929 eV Total energy + Delta-G solvation = -4434.565144 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.34617 -41.35409 -40.62147 -40.17568 -37.84678 -36.93607 -35.33547 -34.57593 -33.36277 -33.09912 -32.80034 -31.06290 -29.99942 -28.16388 -27.37523 -25.33938 -24.53972 -24.22064 -23.65117 -23.18827 -21.98280 -20.18886 -19.74662 -19.50457 -19.05049 -18.66650 -18.51103 -17.75554 -17.38046 -17.07100 -16.87202 -16.59155 -16.33741 -15.95858 -15.65139 -15.46240 -15.02827 -14.91175 -14.59730 -14.38566 -14.29630 -14.07942 -13.94024 -13.83314 -13.44475 -13.34950 -13.19047 -12.74966 -12.63466 -12.62258 -12.55626 -12.37314 -12.31119 -11.98017 -11.76443 -11.65212 -11.41514 -10.95656 -10.72480 -10.69504 -10.64324 -10.33929 -9.88206 -9.73941 -9.40067 -8.22230 -6.29477 -1.44529 -0.48677 0.21378 0.24168 0.34777 0.47156 0.72959 1.43645 1.45479 1.54501 2.10272 2.26722 2.38677 2.51250 3.01052 3.11231 3.21249 3.28216 3.46660 3.66163 3.81113 3.93168 3.94484 3.94997 4.03697 4.09841 4.21904 4.28661 4.31566 4.48393 4.57390 4.60954 4.66015 4.71879 4.81033 4.83942 4.91566 4.94485 5.02384 5.10824 5.12059 5.27157 5.33558 5.42348 5.46793 5.55249 5.68614 5.87061 6.22500 6.44186 6.56771 6.76786 7.18616 7.23734 7.36936 8.93874 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008160 B = 0.003623 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.700043 B = 7725.563154 C =10002.443398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.023 3.977 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.229 1.229 7 C -0.524 4.524 8 H 0.021 0.979 9 C 0.209 3.791 10 N -0.582 5.582 11 C 0.167 3.833 12 C 0.098 3.902 13 C -0.141 4.141 14 C -0.088 4.088 15 C -0.170 4.170 16 C 0.069 3.931 17 N -0.499 5.499 18 C 0.535 3.465 19 O -0.569 6.569 20 C -0.159 4.159 21 C -0.091 4.091 22 C -0.011 4.011 23 C -0.116 4.116 24 C -0.049 4.049 25 C -0.099 4.099 26 C -0.053 4.053 27 C -0.062 4.062 28 N 0.033 4.967 29 O -0.143 6.143 30 O -0.222 6.222 31 H 0.265 0.735 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.187 0.813 44 H 0.195 0.805 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 4.482 8.086 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.152 1.152 7 C -0.563 4.563 8 H 0.040 0.960 9 C 0.088 3.912 10 N -0.311 5.311 11 C 0.044 3.956 12 C -0.040 4.040 13 C -0.161 4.161 14 C -0.114 4.114 15 C -0.190 4.190 16 C -0.088 4.088 17 N -0.209 5.209 18 C 0.326 3.674 19 O -0.451 6.451 20 C -0.180 4.180 21 C -0.111 4.111 22 C -0.013 4.013 23 C -0.134 4.134 24 C -0.066 4.066 25 C -0.117 4.117 26 C -0.072 4.072 27 C -0.145 4.145 28 N 0.545 4.455 29 O -0.368 6.368 30 O -0.420 6.420 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.180 0.820 39 H 0.184 0.816 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.204 0.796 44 H 0.212 0.788 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.162 4.304 8.517 11.931 hybrid contribution -1.085 0.133 -0.987 1.473 sum 6.077 4.436 7.530 10.645 Atomic orbital electron populations 1.70077 1.08515 1.28069 1.51569 1.25729 0.95285 1.02738 0.93853 0.85893 0.80111 0.78458 0.79656 1.19219 1.21453 1.15186 1.21334 0.90789 0.92787 1.51373 0.96021 1.19895 0.93415 0.78530 0.99374 1.47794 1.63558 1.15224 1.04553 1.20342 0.93028 0.96196 0.86057 1.21698 0.97962 0.90881 0.93502 1.22075 0.95344 1.00514 0.98213 1.21890 0.96306 0.94590 0.98592 1.22413 1.01244 0.96753 0.98608 1.23109 0.90070 1.00360 0.95279 1.67508 1.21294 1.09297 1.22832 1.18556 0.77763 0.85722 0.85349 1.90776 1.47942 1.18305 1.88058 1.23340 1.01290 1.01599 0.91755 1.23233 0.96079 1.01238 0.90543 1.18997 0.96810 0.94750 0.90713 1.21882 0.99092 0.90695 1.01730 1.22118 0.90468 1.03451 0.90579 1.21884 0.97568 0.90943 1.01296 1.21437 0.93452 0.96580 0.95710 1.21517 1.17414 0.77444 0.98155 1.44040 0.97026 1.04754 0.99701 1.94430 1.51187 1.66937 1.24203 1.94499 1.52785 1.73098 1.21636 0.92560 0.92896 0.92606 0.89759 0.86215 0.84256 0.82898 0.81966 0.81629 0.83424 0.83047 0.82550 0.79608 0.78780 0.80867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.18 13.96 21.45 0.30 -52.88 16 2 C 0.02 1.13 5.47 84.66 0.46 1.60 16 3 Si 0.94 35.97 27.47 68.60 1.88 37.86 16 4 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.29 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.23 -7.46 6.54 99.48 0.65 -6.80 16 7 C -0.52 -26.20 9.79 25.60 0.25 -25.95 16 8 H 0.02 1.31 8.06 -2.91 -0.02 1.29 16 9 C 0.21 8.39 3.98 85.63 0.34 8.73 16 10 N -0.58 -23.87 2.44 -835.55 -2.04 -25.91 16 11 C 0.17 6.24 5.76 85.63 0.49 6.73 16 12 C 0.10 3.95 6.36 42.55 0.27 4.22 16 13 C -0.14 -5.20 9.57 22.36 0.21 -4.98 16 14 C -0.09 -2.89 10.18 22.47 0.23 -2.66 16 15 C -0.17 -5.31 10.11 22.36 0.23 -5.09 16 16 C 0.07 2.48 11.18 84.67 0.95 3.42 16 17 N -0.50 -21.37 10.27 -183.89 -1.89 -23.26 16 18 C 0.54 23.67 7.60 86.37 0.66 24.33 16 19 O -0.57 -28.40 15.81 -4.33 -0.07 -28.47 16 20 C -0.16 -6.16 8.55 23.61 0.20 -5.96 16 21 C -0.09 -3.38 8.65 23.84 0.21 -3.17 16 22 C -0.01 -0.33 5.83 -20.15 -0.12 -0.45 16 23 C -0.12 -2.47 9.34 22.57 0.21 -2.26 16 24 C -0.05 -0.61 10.03 22.23 0.22 -0.39 16 25 C -0.10 -1.05 10.04 22.35 0.22 -0.83 16 26 C -0.05 -0.93 9.55 22.23 0.21 -0.72 16 27 C -0.06 -1.71 6.87 36.68 0.25 -1.46 16 28 N 0.03 1.13 4.45 -45.73 -0.20 0.93 16 29 O -0.14 -4.58 18.47 18.88 0.35 -4.23 16 30 O -0.22 -8.96 15.31 18.89 0.29 -8.67 16 31 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.05 1.95 5.15 -2.39 -0.01 1.94 16 33 H 0.06 2.00 7.32 -2.38 -0.02 1.99 16 34 H 0.08 3.24 7.42 -2.39 -0.02 3.22 16 35 H 0.12 3.54 7.79 -2.39 -0.02 3.52 16 36 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.17 5.01 8.06 -2.91 -0.02 4.99 16 40 H 0.15 5.20 4.55 -2.91 -0.01 5.18 16 41 H 0.15 6.44 4.49 -4.34 -0.02 6.42 16 42 H 0.16 3.14 6.51 -2.91 -0.02 3.12 16 43 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 44 H 0.20 0.32 8.06 -2.91 -0.02 0.29 16 45 H 0.17 2.29 7.63 -2.91 -0.02 2.27 16 Total: -1.00 -80.34 393.39 5.12 -75.22 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.99 Total: 34.29 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.50 Total: -4.87 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -3.83 Total: -101.13 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: 0.57 Total: -41.37 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 1.88 Total: 37.86 kcal Total: -80.34 5.12 -75.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069769606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.053 kcal (2) G-P(sol) polarization free energy of solvation -80.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds