Wall clock time and date at job start Tue Mar 31 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21255 * 119.99930 * 2 1 4 4 C 1.47184 * 120.00018 * 180.02562 * 2 1 3 5 5 C 1.39876 * 120.14741 * 359.97115 * 4 2 1 6 6 C 1.37891 * 119.94302 * 180.02562 * 5 4 2 7 7 C 1.38336 * 120.22732 * 359.74217 * 6 5 4 8 8 C 1.38849 * 120.29857 * 0.51997 * 7 6 5 9 9 O 1.35907 * 119.97252 * 179.76280 * 8 7 6 10 10 C 1.42907 * 117.00030 * 359.72038 * 9 8 7 11 11 C 1.50698 * 109.47037 * 180.02562 * 10 9 8 12 12 O 1.21288 * 120.00490 * 354.73231 * 11 10 9 13 13 N 1.34776 * 119.99735 * 174.73680 * 11 10 9 14 14 C 1.46507 * 119.99872 * 184.45583 * 13 11 10 15 15 C 1.50709 * 109.46570 * 269.99364 * 14 13 11 16 16 H 1.07997 * 119.99916 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99464 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00330 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99548 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47470 * 59.99729 * 19 17 15 21 21 H 1.48509 * 109.47089 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47306 * 299.99588 * 19 17 15 23 23 C 1.39924 * 120.00395 * 4.44548 * 13 11 10 24 24 C 1.38897 * 120.06364 * 66.96739 * 23 13 11 25 25 C 1.38100 * 119.92573 * 180.27539 * 24 23 13 26 26 C 1.38301 * 120.06655 * 359.47364 * 25 24 23 27 27 C 1.38258 * 120.14572 * 0.27764 * 26 25 24 28 28 C 1.50699 * 119.96290 * 179.97438 * 27 26 25 29 29 C 1.38133 * 120.07153 * 359.97438 * 27 26 25 30 30 C 1.38421 * 120.05663 * 359.47806 * 8 7 6 31 31 H 1.09005 * 109.46755 * 269.99299 * 1 2 3 32 32 H 1.08997 * 109.47456 * 29.99290 * 1 2 3 33 33 H 1.09003 * 109.46853 * 149.99730 * 1 2 3 34 34 H 1.08007 * 120.02724 * 0.02562 * 5 4 2 35 35 H 1.08000 * 119.88822 * 180.02562 * 6 5 4 36 36 H 1.08000 * 119.84578 * 180.27880 * 7 6 5 37 37 H 1.09001 * 109.46900 * 60.00232 * 10 9 8 38 38 H 1.08999 * 109.46864 * 300.00107 * 10 9 8 39 39 H 1.08993 * 109.47143 * 29.99602 * 14 13 11 40 40 H 1.09000 * 109.47143 * 149.99997 * 14 13 11 41 41 H 0.97002 * 119.99853 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.04047 * 0.02562 * 24 23 13 43 43 H 1.07997 * 119.96379 * 179.74785 * 25 24 23 44 44 H 1.08001 * 119.92501 * 180.25263 * 26 25 24 45 45 H 1.08997 * 109.47155 * 90.00310 * 28 27 26 46 46 H 1.09005 * 109.46711 * 209.99363 * 28 27 26 47 47 H 1.08993 * 109.47294 * 329.99621 * 28 27 26 48 48 H 1.07990 * 120.03958 * 179.97438 * 29 27 26 49 49 H 1.07997 * 120.12050 * 180.23260 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5467 -2.4878 -0.0005 6 6 2.2404 -3.6795 -0.0005 7 6 3.6237 -3.6801 -0.0059 8 6 4.3247 -2.4815 -0.0006 9 8 5.6838 -2.4898 -0.0011 10 6 6.3248 -3.7671 -0.0011 11 6 7.8199 -3.5787 -0.0011 12 8 8.2910 -2.4652 -0.0975 13 7 8.6338 -4.6477 0.1060 14 6 10.0832 -4.4580 0.2043 15 6 10.6843 -4.4555 -1.1777 16 1 10.0501 -4.5822 -2.0426 17 6 12.0439 -4.2916 -1.3377 18 7 12.8161 -4.1369 -0.2844 19 14 12.7889 -4.2879 -3.0507 20 1 12.1981 -3.1810 -3.8451 21 1 14.2581 -4.0957 -2.9511 22 1 12.5028 -5.5834 -3.7178 23 6 8.0944 -5.9387 0.1234 24 6 7.4746 -6.4493 -1.0099 25 6 6.9383 -7.7217 -0.9878 26 6 7.0275 -8.4914 0.1578 27 6 7.6484 -7.9880 1.2859 28 6 7.7428 -8.8300 2.5322 29 6 8.1823 -6.7141 1.2719 30 6 3.6406 -1.2782 -0.0006 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5139 34 1 0.4666 -2.4911 -0.0005 35 1 1.7019 -4.6157 -0.0009 36 1 4.1608 -4.6170 -0.0105 37 1 6.0282 -4.3224 -0.8909 38 1 6.0288 -4.3221 0.8891 39 1 10.2927 -3.5068 0.6934 40 1 10.5171 -5.2700 0.7878 41 1 13.7725 -4.0212 -0.3971 42 1 7.4086 -5.8504 -1.9062 43 1 6.4526 -8.1177 -1.8673 44 1 6.6109 -9.4877 0.1713 45 1 8.6635 -9.4129 2.5080 46 1 7.7458 -8.1823 3.4089 47 1 6.8874 -9.5037 2.5811 48 1 8.6668 -6.3212 2.1535 49 1 4.1848 -0.3454 -0.0003 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069779347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:55 Heat of formation + Delta-G solvation = -71.104204 kcal Electronic energy + Delta-G solvation = -32132.238848 eV Core-core repulsion = 27796.186683 eV Total energy + Delta-G solvation = -4336.052165 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.87888 -41.20815 -40.28635 -39.62374 -38.10042 -36.76308 -34.94526 -33.36435 -32.74158 -32.19121 -31.08717 -30.50713 -29.76220 -28.38222 -27.70398 -25.29337 -24.57523 -23.70945 -23.43316 -22.65838 -21.06959 -20.29993 -19.16569 -18.82390 -18.42091 -17.67149 -17.52191 -17.15434 -17.00173 -16.90324 -16.45516 -16.40066 -16.23073 -16.02391 -15.64808 -15.26317 -15.11606 -14.72328 -14.59944 -14.50206 -14.41779 -14.01565 -13.95543 -13.61949 -13.51390 -13.23017 -13.17234 -13.02426 -12.98136 -12.86009 -12.74378 -12.68327 -12.47345 -12.25700 -12.14304 -12.11572 -12.06871 -11.79900 -11.07620 -10.87103 -10.71490 -10.20536 -10.12455 -9.66543 -9.37413 -9.26798 -8.29954 -6.44674 -0.44587 0.29212 0.34902 0.45007 1.30784 1.36228 1.36800 1.41042 1.41657 1.48313 2.30747 2.46577 2.73384 2.77871 3.00260 3.10478 3.29813 3.70593 3.82941 3.88125 3.94468 3.98537 4.04161 4.05904 4.18507 4.24179 4.30312 4.41954 4.46050 4.49718 4.67314 4.69668 4.74896 4.83199 4.85815 4.90649 4.97405 4.98258 5.05209 5.08444 5.23692 5.27021 5.32940 5.33457 5.36424 5.51316 5.60930 5.63778 5.67201 5.71140 5.93413 6.04018 6.20748 6.49332 6.53221 6.61569 7.07557 7.26376 8.77632 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.008645 B = 0.002626 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.144214 B =10661.242363 C =12963.764862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.392 3.608 3 O -0.510 6.510 4 C -0.149 4.149 5 C -0.092 4.092 6 C -0.080 4.080 7 C -0.176 4.176 8 C 0.092 3.908 9 O -0.326 6.326 10 C 0.064 3.936 11 C 0.504 3.496 12 O -0.567 6.567 13 N -0.555 5.555 14 C 0.268 3.732 15 C -0.544 4.544 16 H 0.052 0.948 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.968 3.032 20 H -0.278 1.278 21 H -0.275 1.275 22 H -0.259 1.259 23 C 0.121 3.879 24 C -0.145 4.145 25 C -0.092 4.092 26 C -0.116 4.116 27 C -0.073 4.073 28 C -0.112 4.112 29 C -0.139 4.139 30 C -0.127 4.127 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.184 0.816 35 H 0.179 0.821 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.002 0.998 40 H 0.028 0.972 41 H 0.269 0.731 42 H 0.115 0.885 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.094 0.906 48 H 0.111 0.889 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.766 -12.411 2.445 32.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.273 3.727 3 O -0.389 6.389 4 C -0.150 4.150 5 C -0.109 4.109 6 C -0.098 4.098 7 C -0.194 4.194 8 C 0.048 3.952 9 O -0.240 6.240 10 C -0.014 4.014 11 C 0.292 3.708 12 O -0.445 6.445 13 N -0.283 5.283 14 C 0.148 3.852 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.792 3.208 20 H -0.204 1.204 21 H -0.200 1.200 22 H -0.183 1.183 23 C 0.031 3.969 24 C -0.164 4.164 25 C -0.110 4.110 26 C -0.134 4.134 27 C -0.074 4.074 28 C -0.168 4.168 29 C -0.159 4.159 30 C -0.146 4.146 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.201 0.799 35 H 0.196 0.804 36 H 0.169 0.831 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.020 0.980 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.133 0.867 43 H 0.177 0.823 44 H 0.179 0.821 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.113 0.887 48 H 0.129 0.871 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -28.852 -11.053 2.470 30.995 hybrid contribution 1.960 0.870 -0.651 2.241 sum -26.892 -10.182 1.819 28.813 Atomic orbital electron populations 1.22278 0.88881 1.06727 1.06655 1.23357 0.94056 0.86362 0.68912 1.90561 1.73676 1.35994 1.38674 1.20562 0.91968 0.97066 1.05398 1.21882 1.02312 0.89568 0.97179 1.21473 0.92090 1.00249 0.95947 1.21878 0.97105 0.96367 1.04082 1.19220 0.81521 0.95448 0.99058 1.86149 1.17873 1.30858 1.89141 1.22490 0.88373 0.84799 1.05718 1.20742 0.89264 0.84158 0.76624 1.90703 1.78119 1.26012 1.49705 1.45673 1.07866 1.04259 1.70519 1.18882 0.73886 0.95663 0.96728 1.21548 0.93024 1.50807 0.92828 0.92943 1.25847 0.97315 0.94188 1.01615 1.70032 1.05630 1.49572 1.31302 0.85465 0.77340 0.79121 0.78918 1.20396 1.19953 1.18292 1.18033 0.98507 0.85213 0.95152 1.21401 1.01115 0.97918 0.95972 1.21332 0.98123 0.91954 0.99563 1.21446 0.99241 1.00979 0.91737 1.20111 0.96510 0.92906 0.97832 1.20852 1.03707 0.99048 0.93234 1.21225 1.01967 0.95837 0.96876 1.20675 0.94573 0.96152 1.03214 0.86130 0.89214 0.86053 0.79925 0.80406 0.83120 0.86558 0.86758 0.98001 0.95407 0.92202 0.86696 0.82321 0.82109 0.90774 0.91616 0.88724 0.87124 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.47 9.75 71.24 0.69 -0.77 16 2 C 0.39 7.92 7.23 28.04 0.20 8.13 16 3 O -0.51 -15.72 17.09 -2.95 -0.05 -15.77 16 4 C -0.15 -3.09 5.87 -20.16 -0.12 -3.21 16 5 C -0.09 -1.04 9.36 22.58 0.21 -0.83 16 6 C -0.08 -0.91 10.02 22.21 0.22 -0.69 16 7 C -0.18 -3.33 9.04 22.44 0.20 -3.13 16 8 C 0.09 2.67 6.68 22.46 0.15 2.82 16 9 O -0.33 -12.19 9.67 -73.52 -0.71 -12.90 16 10 C 0.06 2.11 3.89 71.24 0.28 2.39 16 11 C 0.50 23.25 7.61 87.66 0.67 23.92 16 12 O -0.57 -32.77 16.13 15.93 0.26 -32.51 16 13 N -0.56 -25.33 2.51 -635.28 -1.59 -26.93 16 14 C 0.27 15.13 5.07 85.63 0.43 15.56 16 15 C -0.54 -32.53 9.39 25.60 0.24 -32.29 16 16 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 17 C 0.01 0.58 5.46 84.65 0.46 1.04 16 18 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 19 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 23 C 0.12 4.28 4.42 38.15 0.17 4.45 16 24 C -0.14 -4.17 8.46 22.39 0.19 -3.98 16 25 C -0.09 -1.82 10.04 22.25 0.22 -1.59 16 26 C -0.12 -2.05 9.70 22.29 0.22 -1.84 16 27 C -0.07 -1.61 5.88 -19.88 -0.12 -1.72 16 28 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 29 C -0.14 -4.27 9.29 22.39 0.21 -4.06 16 30 C -0.13 -3.77 9.54 22.68 0.22 -3.55 16 31 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.12 0.12 6.47 -2.39 -0.02 0.11 16 34 H 0.18 0.27 6.35 -2.91 -0.02 0.26 16 35 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 36 H 0.15 2.27 6.28 -2.91 -0.02 2.26 16 37 H 0.12 3.15 6.50 -2.39 -0.02 3.13 16 38 H 0.11 3.06 7.55 -2.39 -0.02 3.04 16 39 H 0.00 0.12 7.49 -2.39 -0.02 0.11 16 40 H 0.03 1.60 7.83 -2.39 -0.02 1.58 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.11 3.44 7.92 -2.91 -0.02 3.42 16 43 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 1.04 8.08 -2.38 -0.02 1.02 16 47 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 48 H 0.11 3.60 8.06 -2.92 -0.02 3.57 16 49 H 0.11 3.76 7.65 -2.91 -0.02 3.74 16 Total: -1.00 -91.72 419.21 6.65 -85.07 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.97 Total: 12.14 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 5.47 Total: -0.38 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.31 Total: -83.86 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -0.50 Total: -61.19 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -91.72 6.65 -85.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069779347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.967 kcal (2) G-P(sol) polarization free energy of solvation -91.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds