Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81399 * 109.47127 * 2 1 4 4 O 1.42105 * 110.54023 * 68.37304 * 3 2 1 5 5 O 1.42097 * 110.54555 * 291.62650 * 3 2 1 6 6 N 1.65594 * 104.44711 * 179.97438 * 3 2 1 7 7 C 1.46965 * 120.59392 * 90.00753 * 6 3 2 8 8 C 1.53373 * 108.63676 * 235.20373 * 7 6 3 9 9 N 1.46969 * 108.63195 * 310.57375 * 8 7 6 10 10 C 1.34777 * 120.59375 * 235.20595 * 9 8 7 11 11 O 1.21584 * 119.99739 * 5.40762 * 10 9 8 12 12 N 1.34779 * 119.99841 * 185.41206 * 10 9 8 13 13 C 1.39243 * 119.99507 * 175.28275 * 12 10 9 14 14 C 1.39477 * 119.83592 * 36.81597 * 13 12 10 15 15 C 1.36379 * 120.17032 * 179.97438 * 14 13 12 16 16 C 1.40868 * 119.82737 * 0.27392 * 15 14 13 17 17 C 1.41154 * 120.16269 * 179.70633 * 16 15 14 18 18 H 1.08006 * 119.99714 * 211.90306 * 17 16 15 19 19 C 1.39888 * 120.00260 * 31.89961 * 17 16 15 20 20 N 1.30884 * 120.00149 * 7.53736 * 19 17 16 21 21 Si 1.86801 * 119.99930 * 187.54034 * 19 17 16 22 22 H 1.48503 * 109.47423 * 59.99872 * 21 19 17 23 23 H 1.48500 * 109.46827 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47072 * 299.99631 * 21 19 17 25 25 C 1.40874 * 119.66721 * 359.45062 * 16 15 14 26 26 C 1.36372 * 119.83180 * 0.54813 * 25 16 15 27 27 C 1.46969 * 118.81259 * 55.47521 * 9 8 7 28 28 C 1.46969 * 120.59574 * 269.97678 * 6 3 2 29 29 H 1.09005 * 109.47028 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47268 * 299.99817 * 1 2 3 31 31 H 1.09006 * 109.46923 * 60.00380 * 1 2 3 32 32 H 1.09002 * 109.46710 * 239.99930 * 2 1 3 33 33 H 1.09002 * 109.47057 * 120.00544 * 2 1 3 34 34 H 1.08994 * 109.61474 * 115.45346 * 7 6 3 35 35 H 1.09001 * 109.75001 * 355.02758 * 7 6 3 36 36 H 1.08994 * 109.61433 * 190.82851 * 8 7 6 37 37 H 1.09001 * 109.61274 * 70.31070 * 8 7 6 38 38 H 0.96993 * 119.99954 * 355.27947 * 12 10 9 39 39 H 1.08002 * 119.91730 * 359.95058 * 14 13 12 40 40 H 1.08002 * 120.08718 * 180.02562 * 15 14 13 41 41 H 0.96999 * 120.00144 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.07884 * 180.27692 * 25 16 15 43 43 H 1.07999 * 119.91502 * 179.69698 * 26 25 16 44 44 H 1.09000 * 109.60787 * 64.27039 * 27 9 8 45 45 H 1.08996 * 109.60550 * 184.78079 * 27 9 8 46 46 H 1.09001 * 109.60751 * 244.54303 * 28 6 3 47 47 H 1.08994 * 109.60886 * 5.05418 * 28 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8386 2.3439 -1.2369 6 7 3.7843 1.5652 0.0007 7 6 4.5299 1.4997 -1.2640 8 6 5.3851 0.2265 -1.2634 9 7 6.1297 0.1616 0.0020 10 6 7.4723 0.0436 0.0025 11 8 8.0869 0.0888 -1.0456 12 7 8.1335 -0.1245 1.1649 13 6 9.5084 -0.3446 1.1581 14 6 10.3117 0.3118 0.2257 15 6 11.6591 0.1017 0.2132 16 6 12.2385 -0.7853 1.1416 17 6 13.6316 -1.0128 1.1310 18 1 14.0234 -1.9774 1.4183 19 6 14.5046 0.0110 0.7484 20 7 14.0460 1.2195 0.5429 21 14 16.3251 -0.3466 0.5307 22 1 16.5042 -1.3817 -0.5190 23 1 17.0286 0.8965 0.1244 24 1 16.8897 -0.8389 1.8129 25 6 11.4214 -1.4401 2.0840 26 6 10.0756 -1.2198 2.0842 27 6 5.3836 0.2216 1.2668 28 6 4.5290 1.5004 1.2661 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.1750 2.3736 -1.3541 35 1 3.8329 1.4717 -2.1016 36 1 6.0848 0.2553 -2.0986 37 1 4.7400 -0.6475 -1.3534 38 1 7.6516 -0.0921 2.0060 39 1 9.8654 0.9879 -0.4886 40 1 12.2799 0.6109 -0.5091 41 1 14.6514 1.9296 0.2780 42 1 11.8592 -2.1180 2.8017 43 1 9.4473 -1.7248 2.8030 44 1 4.7385 -0.6528 1.3527 45 1 6.0825 0.2472 2.1028 46 1 5.1740 2.3744 1.3561 47 1 3.8292 1.4716 2.1013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069811087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = -53.927455 kcal Electronic energy + Delta-G solvation = -30966.885741 eV Core-core repulsion = 26663.482024 eV Total energy + Delta-G solvation = -4303.403717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.140 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.43729 -38.32569 -37.57721 -37.08365 -36.34779 -34.56946 -34.07649 -33.65047 -32.87823 -31.59319 -29.50630 -28.99104 -27.25207 -24.98622 -24.59860 -24.14419 -22.41735 -21.28341 -20.86788 -19.77794 -19.00882 -18.57417 -17.40812 -17.27492 -16.83787 -16.80016 -16.48847 -15.57106 -15.40717 -15.27016 -14.95844 -14.72530 -14.65292 -14.13757 -13.96526 -13.85794 -13.63322 -13.06256 -13.01848 -12.99544 -12.82167 -12.64247 -12.50221 -12.33877 -12.10056 -12.07593 -11.91055 -11.74716 -11.66652 -11.41298 -11.32123 -11.09077 -11.08210 -11.04447 -10.68979 -9.98888 -9.79941 -9.72256 -9.43131 -9.19337 -8.89324 -8.55862 -7.51633 -6.90826 -6.64288 -4.30860 -0.21696 2.11263 2.63372 2.83304 3.06483 3.09841 3.12583 3.16557 3.40208 3.59076 3.64717 3.95557 3.98000 4.09939 4.22683 4.30421 4.52989 4.64968 4.69790 4.75682 4.80177 4.88111 5.02458 5.06445 5.16200 5.18246 5.36367 5.45417 5.51075 5.57142 5.68963 5.75822 6.06907 6.12882 6.33336 6.38586 6.78588 6.81546 7.05474 7.11683 7.26425 7.31630 7.63800 7.78432 7.99383 8.08612 8.27617 8.38247 8.66181 8.90199 8.92516 9.05999 10.29123 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.030090 B = 0.001792 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.319580 B =15624.367121 C =15899.605457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.633 4.633 3 S 2.607 3.393 4 O -0.953 6.953 5 O -0.952 6.952 6 N -0.998 5.998 7 C 0.105 3.895 8 C 0.116 3.884 9 N -0.634 5.634 10 C 0.700 3.300 11 O -0.571 6.571 12 N -0.666 5.666 13 C 0.017 3.983 14 C -0.089 4.089 15 C -0.144 4.144 16 C 0.104 3.896 17 C -0.463 4.463 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.805 5.805 21 Si 0.912 3.088 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.208 4.208 26 C -0.111 4.111 27 C 0.096 3.904 28 C 0.105 3.895 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.389 0.611 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.275 -1.590 0.644 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.762 4.762 3 S 2.700 3.300 4 O -0.943 6.943 5 O -0.942 6.942 6 N -0.836 5.836 7 C -0.021 4.021 8 C -0.009 4.009 9 N -0.373 5.373 10 C 0.402 3.598 11 O -0.448 6.448 12 N -0.314 5.314 13 C -0.076 4.076 14 C -0.109 4.109 15 C -0.164 4.164 16 C 0.102 3.898 17 C -0.493 4.493 18 H 0.094 0.906 19 C -0.145 4.145 20 N -0.431 5.431 21 Si 0.737 3.263 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.228 4.228 26 C -0.131 4.131 27 C -0.030 4.030 28 C -0.021 4.021 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.225 0.775 39 H 0.124 0.876 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.203 -0.510 -0.204 24.209 hybrid contribution 0.723 -0.860 0.503 1.231 sum -23.480 -1.370 0.299 23.522 Atomic orbital electron populations 1.21511 0.90488 1.05154 1.03461 1.30583 1.07207 1.26671 1.11738 1.05253 0.72848 0.77553 0.74353 1.93600 1.83073 1.72447 1.45192 1.93603 1.83025 1.72411 1.45166 1.57677 1.24037 1.89673 1.12185 1.21934 0.96093 0.99538 0.84583 1.21807 0.95139 0.96494 0.87496 1.47135 1.04558 1.79253 1.06370 1.15918 0.80679 0.78404 0.84791 1.90919 1.65606 1.57386 1.30850 1.42261 1.07836 1.74925 1.06357 1.17018 0.79733 1.05534 1.05287 1.20567 0.93622 0.98650 0.98041 1.21050 0.92519 1.02607 1.00236 1.17686 0.93149 0.90265 0.88737 1.19459 0.91097 0.98684 1.40094 0.90627 1.25877 1.01351 0.94497 0.92737 1.69796 1.37409 1.01104 1.34825 0.86309 0.81718 0.78604 0.79655 1.18989 1.20422 1.19143 1.20608 0.92827 1.07483 1.01892 1.20021 0.95397 0.98112 0.99570 1.22098 0.95862 0.97753 0.87245 1.21955 0.96281 0.98910 0.84949 0.89937 0.90950 0.90944 0.84967 0.85022 0.89958 0.87997 0.87292 0.91631 0.77531 0.87570 0.86130 0.90968 0.88579 0.89289 0.90997 0.89069 0.89889 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.92 37.16 0.37 -0.29 16 2 C -0.63 -2.82 6.90 37.16 0.26 -2.56 16 3 S 2.61 20.70 5.42 -107.50 -0.58 20.12 16 4 O -0.95 -10.26 16.70 -57.54 -0.96 -11.22 16 5 O -0.95 -10.48 16.71 -57.54 -0.96 -11.44 16 6 N -1.00 -7.83 3.20 -113.00 -0.36 -8.19 16 7 C 0.10 0.88 6.48 -3.60 -0.02 0.85 16 8 C 0.12 1.12 6.60 -3.59 -0.02 1.09 16 9 N -0.63 -7.41 2.94 -177.93 -0.52 -7.94 16 10 C 0.70 11.88 8.13 -86.92 -0.71 11.18 16 11 O -0.57 -12.19 13.26 5.29 0.07 -12.12 16 12 N -0.67 -11.30 5.21 -14.10 -0.07 -11.37 16 13 C 0.02 0.37 6.28 -83.57 -0.52 -0.16 16 14 C -0.09 -2.19 8.60 -39.79 -0.34 -2.53 16 15 C -0.14 -3.85 8.58 -39.26 -0.34 -4.18 16 16 C 0.10 2.78 5.53 -106.80 -0.59 2.19 16 17 C -0.46 -12.29 9.04 -37.86 -0.34 -12.63 16 18 H 0.08 1.91 7.86 -52.48 -0.41 1.50 16 19 C 0.07 1.81 5.29 -17.34 -0.09 1.72 16 20 N -0.80 -21.15 10.88 55.54 0.60 -20.55 16 21 Si 0.91 18.95 29.57 -169.99 -5.03 13.93 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.21 -4.97 9.74 -39.26 -0.38 -5.35 16 26 C -0.11 -2.37 9.90 -39.79 -0.39 -2.76 16 27 C 0.10 0.75 6.59 -3.36 -0.02 0.72 16 28 C 0.11 0.78 6.50 -3.36 -0.02 0.76 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.69 7.07 -51.93 -0.37 0.32 16 36 H 0.11 1.26 6.99 -51.93 -0.36 0.90 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.39 5.07 6.29 -40.82 -0.26 4.82 16 39 H 0.11 2.65 6.32 -52.49 -0.33 2.32 16 40 H 0.12 3.36 6.34 -52.49 -0.33 3.03 16 41 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 42 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 43 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.64 5.61 -51.93 -0.29 0.35 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.58 7.06 -51.93 -0.37 0.21 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -35.65 390.49 -11.61 -47.26 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.51 Total: 7.59 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.18 Total: -11.95 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.35 Total: -48.05 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.85 Total: -34.78 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Atomic # 16 Polarization: 20.70 SS G_CDS: -0.58 Total: 20.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.65 -11.61 -47.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069811087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.665 kcal (2) G-P(sol) polarization free energy of solvation -35.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds