Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48501 * 109.46953 * 269.99783 * 3 2 1 5 5 H 1.48499 * 109.47264 * 29.99923 * 3 2 1 6 6 H 1.48499 * 109.46930 * 150.00254 * 3 2 1 7 7 C 1.37877 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00267 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99761 * 179.97438 * 7 2 1 10 10 S 1.81394 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.76197 * 103.00247 * 180.02562 * 10 9 7 12 12 C 1.38726 * 120.10124 * 359.97438 * 11 10 9 13 13 C 1.38253 * 119.99704 * 180.02562 * 12 11 10 14 14 C 1.38270 * 120.19139 * 0.02562 * 13 12 11 15 15 C 1.38287 * 120.20809 * 359.97438 * 14 13 12 16 16 C 1.38642 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.40010 * 120.09399 * 180.02562 * 16 15 14 18 18 S 1.65598 * 120.00306 * 35.52239 * 17 16 15 19 19 O 1.42100 * 106.40319 * 173.96717 * 18 17 16 20 20 O 1.42103 * 106.40367 * 306.88451 * 18 17 16 21 21 C 1.76194 * 107.21872 * 60.42517 * 18 17 16 22 22 C 1.38248 * 119.97675 * 269.72899 * 21 18 17 23 23 C 1.38194 * 120.02747 * 179.72438 * 22 21 18 24 24 C 1.38458 * 119.97457 * 0.57022 * 23 22 21 25 25 F 1.35095 * 120.02889 * 179.68276 * 24 23 22 26 26 C 1.38460 * 119.94859 * 359.70160 * 24 23 22 27 27 C 1.38196 * 119.97360 * 0.02562 * 26 24 23 28 28 H 0.96999 * 119.99928 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47350 * 59.99824 * 9 7 2 30 30 H 1.09001 * 109.47259 * 299.99981 * 9 7 2 31 31 H 1.07999 * 120.00468 * 0.02562 * 12 11 10 32 32 H 1.07998 * 119.90069 * 180.02562 * 13 12 11 33 33 H 1.08004 * 119.89359 * 179.71883 * 14 13 12 34 34 H 1.07999 * 119.99585 * 179.97438 * 15 14 13 35 35 H 0.97000 * 119.99716 * 215.53133 * 17 16 15 36 36 H 1.08001 * 119.98146 * 359.97438 * 22 21 18 37 37 H 1.08004 * 120.01382 * 180.25105 * 23 22 21 38 38 H 1.07994 * 120.01668 * 179.97438 * 26 24 23 39 39 H 1.08000 * 119.99387 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1162 -2.9043 -0.0010 11 6 5.8669 -2.7057 -0.0009 12 6 6.4230 -1.4348 -0.0015 13 6 7.7970 -1.2815 -0.0020 14 6 8.6206 -2.3922 -0.0025 15 6 8.0751 -3.6629 -0.0019 16 6 6.6983 -3.8262 -0.0014 17 7 6.1438 -5.1118 -0.0002 18 16 6.8879 -6.3338 0.8338 19 8 6.0202 -7.4566 0.7596 20 8 8.2361 -6.3625 0.3857 21 6 6.9370 -5.8541 2.5285 22 6 8.0206 -5.1466 3.0150 23 6 8.0575 -4.7649 4.3426 24 6 7.0143 -5.1015 5.1885 25 9 7.0523 -4.7344 6.4881 26 6 5.9322 -5.8149 4.7015 27 6 5.8948 -6.1906 3.3721 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6804 0.8889 30 1 3.8745 -0.6800 -0.8911 31 1 5.7827 -0.5651 -0.0016 32 1 8.2283 -0.2913 -0.0021 33 1 9.6933 -2.2668 -0.0074 34 1 8.7215 -4.5280 -0.0026 35 1 5.3239 -5.2868 -0.4880 36 1 8.8366 -4.8887 2.3562 37 1 8.9023 -4.2087 4.7215 38 1 5.1181 -6.0783 5.3604 39 1 5.0511 -6.7475 2.9920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069900229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -63.037045 kcal Electronic energy + Delta-G solvation = -27835.512848 eV Core-core repulsion = 23682.880830 eV Total energy + Delta-G solvation = -4152.632018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.050 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.39543 -39.44652 -39.20448 -37.50176 -36.16542 -35.12871 -33.23011 -31.62640 -31.20672 -31.05186 -29.47717 -29.02793 -23.60782 -23.53274 -23.27629 -22.91510 -21.98876 -19.81179 -18.66666 -18.18086 -17.89473 -17.37022 -17.05929 -16.79727 -16.70217 -16.04048 -15.47122 -15.18357 -15.05887 -14.72661 -14.37268 -14.06128 -13.77135 -13.76445 -13.67496 -13.55694 -13.44225 -13.00726 -12.90430 -12.63720 -12.56485 -12.38773 -12.24066 -11.81123 -11.56095 -11.44030 -11.15690 -10.96835 -10.89049 -10.49608 -10.33601 -9.85058 -9.57737 -9.54323 -9.48602 -9.33871 -8.85088 -8.47842 -6.86091 -6.33163 -4.37830 -0.03112 0.34323 0.80234 1.33162 1.37499 2.12173 2.59888 2.98719 3.10085 3.16630 3.17857 3.30382 3.44299 3.70829 3.74223 3.99055 4.17024 4.32299 4.44080 4.76685 4.80636 4.96083 4.97761 4.99970 5.08331 5.24807 5.42145 5.42898 5.56068 5.59671 5.65818 5.67393 5.75966 6.02980 6.22522 6.33899 6.36277 6.40916 6.44182 6.56078 6.71010 7.01715 7.22192 8.11712 8.66693 9.21222 10.78429 Molecular weight = 367.05amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.003400 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.194369 B = 8232.474986 C = 8897.618572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.084 3.916 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.028 3.972 10 S -0.115 6.115 11 C -0.092 4.092 12 C -0.117 4.117 13 C -0.112 4.112 14 C -0.112 4.112 15 C -0.159 4.159 16 C 0.157 3.843 17 N -1.044 6.044 18 S 2.697 3.303 19 O -0.949 6.949 20 O -0.949 6.949 21 C -0.689 4.689 22 C 0.016 3.984 23 C -0.176 4.176 24 C 0.158 3.842 25 F -0.130 7.130 26 C -0.174 4.174 27 C 0.018 3.982 28 H 0.270 0.730 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.160 0.840 35 H 0.431 0.569 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.546 -8.748 6.055 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.121 4.121 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.103 0.897 9 C -0.120 4.120 10 S 0.132 5.868 11 C -0.209 4.209 12 C -0.142 4.142 13 C -0.133 4.133 14 C -0.134 4.134 15 C -0.181 4.181 16 C 0.054 3.946 17 N -0.796 5.796 18 S 2.789 3.211 19 O -0.939 6.939 20 O -0.939 6.939 21 C -0.776 4.776 22 C -0.004 4.004 23 C -0.196 4.196 24 C 0.138 3.862 25 F -0.109 7.109 26 C -0.194 4.194 27 C -0.001 4.001 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.177 0.823 35 H 0.270 0.730 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 17.980 -10.440 5.851 21.599 hybrid contribution 0.437 2.754 0.681 2.871 sum 18.417 -7.685 6.531 20.998 Atomic orbital electron populations 1.69848 1.06157 1.27558 1.48637 1.24823 0.94749 0.98727 0.93828 0.86839 0.80348 0.83591 0.78992 1.19657 1.20598 1.19004 1.20372 0.86409 0.95536 1.53808 0.89657 1.21767 1.01530 0.88739 0.99927 1.85345 0.92933 1.18714 1.89776 1.22124 0.99563 0.94960 1.04268 1.21238 0.95803 0.95821 1.01345 1.21095 0.93060 0.98889 1.00227 1.20906 0.99686 0.91566 1.01248 1.21778 0.92649 1.00228 1.03473 1.16819 0.91280 0.82499 1.04017 1.53240 1.41118 1.21389 1.63814 1.01955 0.73753 0.72093 0.73345 1.93616 1.66718 1.47037 1.86520 1.93525 1.35197 1.85529 1.79628 1.30851 1.03926 1.17158 1.25701 1.20835 0.95165 0.89367 0.95006 1.21254 0.99688 1.04472 0.94137 1.18019 0.95227 0.94589 0.78344 1.91550 1.96441 1.89129 1.33733 1.21293 0.98948 1.01909 0.97203 1.20828 0.95458 0.91780 0.92063 0.91982 0.93830 0.94250 0.85178 0.85868 0.85513 0.82262 0.72989 0.83159 0.83624 0.83447 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 19.84 27.47 -169.99 -4.67 15.17 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.67 6.54 56.52 0.37 -5.30 16 7 C -0.52 -13.97 9.68 -34.44 -0.33 -14.30 16 8 H 0.09 2.50 7.96 -52.49 -0.42 2.08 16 9 C 0.03 0.63 3.16 36.01 0.11 0.74 16 10 S -0.12 -2.21 20.74 -107.50 -2.23 -4.44 16 11 C -0.09 -1.49 6.12 -38.92 -0.24 -1.73 16 12 C -0.12 -1.79 9.36 -39.40 -0.37 -2.15 16 13 C -0.11 -1.37 10.04 -39.56 -0.40 -1.77 16 14 C -0.11 -1.24 10.04 -39.55 -0.40 -1.64 16 15 C -0.16 -1.95 8.53 -39.41 -0.34 -2.29 16 16 C 0.16 2.20 6.26 -83.49 -0.52 1.68 16 17 N -1.04 -13.42 5.47 32.54 0.18 -13.24 16 18 S 2.70 32.62 5.52 -107.50 -0.59 32.03 16 19 O -0.95 -13.29 17.28 -57.17 -0.99 -14.28 16 20 O -0.95 -12.23 14.24 -57.17 -0.81 -13.05 16 21 C -0.69 -7.74 5.81 -39.57 -0.23 -7.97 16 22 C 0.02 0.16 9.36 -39.59 -0.37 -0.21 16 23 C -0.18 -1.68 10.03 -39.52 -0.40 -2.08 16 24 C 0.16 1.65 7.30 -39.42 -0.29 1.36 16 25 F -0.13 -1.39 17.27 2.25 0.04 -1.36 16 26 C -0.17 -1.75 10.03 -39.51 -0.40 -2.15 16 27 C 0.02 0.19 9.52 -39.59 -0.38 -0.18 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.04 0.96 6.81 -51.92 -0.35 0.60 16 30 H 0.04 0.85 7.18 -51.92 -0.37 0.48 16 31 H 0.13 2.08 5.88 -52.49 -0.31 1.77 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 34 H 0.16 1.82 5.14 -52.49 -0.27 1.55 16 35 H 0.43 5.33 8.13 -34.47 -0.28 5.05 16 36 H 0.15 1.26 6.99 -52.49 -0.37 0.90 16 37 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 38 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.15 1.42 7.61 -52.49 -0.40 1.02 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -31.66 359.63 -11.15 -42.81 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -3.63 Total: 6.27 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -4.63 Total: -30.50 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.95 Total: -38.08 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.80 Total: -27.33 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Atomic # 16 Polarization: 30.42 SS G_CDS: -2.82 Total: 27.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.66 -11.15 -42.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069900229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.230 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds