Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48501 * 109.46953 * 269.99783 * 3 2 1 5 5 H 1.48499 * 109.47264 * 29.99923 * 3 2 1 6 6 H 1.48499 * 109.46930 * 150.00254 * 3 2 1 7 7 C 1.37877 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00267 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99761 * 179.97438 * 7 2 1 10 10 S 1.81394 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.76197 * 103.00247 * 180.02562 * 10 9 7 12 12 C 1.38726 * 120.10124 * 359.97438 * 11 10 9 13 13 C 1.38253 * 119.99704 * 180.02562 * 12 11 10 14 14 C 1.38270 * 120.19139 * 0.02562 * 13 12 11 15 15 C 1.38287 * 120.20809 * 359.97438 * 14 13 12 16 16 C 1.38642 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.40010 * 120.09399 * 180.02562 * 16 15 14 18 18 S 1.65598 * 120.00306 * 35.52239 * 17 16 15 19 19 O 1.42100 * 106.40319 * 173.96717 * 18 17 16 20 20 O 1.42103 * 106.40367 * 306.88451 * 18 17 16 21 21 C 1.76194 * 107.21872 * 60.42517 * 18 17 16 22 22 C 1.38248 * 119.97675 * 269.72899 * 21 18 17 23 23 C 1.38194 * 120.02747 * 179.72438 * 22 21 18 24 24 C 1.38458 * 119.97457 * 0.57022 * 23 22 21 25 25 F 1.35095 * 120.02889 * 179.68276 * 24 23 22 26 26 C 1.38460 * 119.94859 * 359.70160 * 24 23 22 27 27 C 1.38196 * 119.97360 * 0.02562 * 26 24 23 28 28 H 0.96999 * 119.99928 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47350 * 59.99824 * 9 7 2 30 30 H 1.09001 * 109.47259 * 299.99981 * 9 7 2 31 31 H 1.07999 * 120.00468 * 0.02562 * 12 11 10 32 32 H 1.07998 * 119.90069 * 180.02562 * 13 12 11 33 33 H 1.08004 * 119.89359 * 179.71883 * 14 13 12 34 34 H 1.07999 * 119.99585 * 179.97438 * 15 14 13 35 35 H 0.97000 * 119.99716 * 215.53133 * 17 16 15 36 36 H 1.08001 * 119.98146 * 359.97438 * 22 21 18 37 37 H 1.08004 * 120.01382 * 180.25105 * 23 22 21 38 38 H 1.07994 * 120.01668 * 179.97438 * 26 24 23 39 39 H 1.08000 * 119.99387 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1162 -2.9043 -0.0010 11 6 5.8669 -2.7057 -0.0009 12 6 6.4230 -1.4348 -0.0015 13 6 7.7970 -1.2815 -0.0020 14 6 8.6206 -2.3922 -0.0025 15 6 8.0751 -3.6629 -0.0019 16 6 6.6983 -3.8262 -0.0014 17 7 6.1438 -5.1118 -0.0002 18 16 6.8879 -6.3338 0.8338 19 8 6.0202 -7.4566 0.7596 20 8 8.2361 -6.3625 0.3857 21 6 6.9370 -5.8541 2.5285 22 6 8.0206 -5.1466 3.0150 23 6 8.0575 -4.7649 4.3426 24 6 7.0143 -5.1015 5.1885 25 9 7.0523 -4.7344 6.4881 26 6 5.9322 -5.8149 4.7015 27 6 5.8948 -6.1906 3.3721 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6804 0.8889 30 1 3.8745 -0.6800 -0.8911 31 1 5.7827 -0.5651 -0.0016 32 1 8.2283 -0.2913 -0.0021 33 1 9.6933 -2.2668 -0.0074 34 1 8.7215 -4.5280 -0.0026 35 1 5.3239 -5.2868 -0.4880 36 1 8.8366 -4.8887 2.3562 37 1 8.9023 -4.2087 4.7215 38 1 5.1181 -6.0783 5.3604 39 1 5.0511 -6.7475 2.9920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069900229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -82.302210 kcal Electronic energy + Delta-G solvation = -27836.348249 eV Core-core repulsion = 23682.880830 eV Total energy + Delta-G solvation = -4153.467418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.050 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.19997 -40.44495 -40.02179 -38.52932 -37.19442 -36.16005 -35.24393 -32.41811 -32.26879 -31.95046 -31.29062 -30.04860 -25.01232 -24.40487 -24.34297 -23.94225 -23.25268 -20.76794 -19.67392 -19.31619 -18.93872 -18.73301 -18.24186 -17.91942 -17.61864 -16.84707 -16.73019 -16.36881 -16.01556 -15.85433 -15.76862 -15.10598 -14.98331 -14.90960 -14.69898 -14.58430 -14.50203 -14.35020 -14.24374 -13.82792 -13.61164 -13.42824 -13.31068 -13.06554 -12.72329 -12.41137 -12.35533 -12.30449 -12.16227 -12.06005 -11.83921 -11.56136 -10.97803 -10.92164 -10.62504 -10.33478 -10.32988 -9.51191 -8.40899 -8.26636 -6.51888 -0.97479 -0.50292 0.03718 0.28101 0.35246 0.72228 1.32690 1.33988 1.43857 1.64621 1.77165 2.14946 2.26255 2.50090 2.70527 2.92443 2.96018 3.08120 3.53214 3.72356 3.85714 3.92146 4.04041 4.14204 4.19266 4.44622 4.49600 4.52200 4.56774 4.65243 4.70027 4.78124 4.80208 4.88588 4.91280 5.04629 5.21419 5.28756 5.38465 5.58148 5.60267 5.71113 6.01127 6.02570 6.52355 7.11478 8.74511 Molecular weight = 367.05amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.003400 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.194369 B = 8232.474986 C = 8897.618572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.242 1.242 7 C -0.533 4.533 8 H 0.041 0.959 9 C 0.034 3.966 10 S -0.143 6.143 11 C -0.113 4.113 12 C -0.131 4.131 13 C -0.108 4.108 14 C -0.091 4.091 15 C -0.161 4.161 16 C 0.157 3.843 17 N -1.048 6.048 18 S 2.713 3.287 19 O -0.972 6.972 20 O -0.955 6.955 21 C -0.697 4.697 22 C 0.010 3.990 23 C -0.172 4.172 24 C 0.147 3.853 25 F -0.133 7.133 26 C -0.179 4.179 27 C 0.002 3.998 28 H 0.273 0.727 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.119 0.881 32 H 0.154 0.846 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.430 0.570 36 H 0.170 0.830 37 H 0.173 0.827 38 H 0.163 0.837 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.661 -7.390 6.506 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.059 0.941 9 C -0.114 4.114 10 S 0.103 5.897 11 C -0.230 4.230 12 C -0.156 4.156 13 C -0.129 4.129 14 C -0.112 4.112 15 C -0.183 4.183 16 C 0.055 3.945 17 N -0.799 5.799 18 S 2.806 3.194 19 O -0.963 6.963 20 O -0.945 6.945 21 C -0.786 4.786 22 C -0.009 4.009 23 C -0.192 4.192 24 C 0.127 3.873 25 F -0.111 7.111 26 C -0.199 4.199 27 C -0.017 4.017 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.137 0.863 32 H 0.172 0.828 33 H 0.187 0.813 34 H 0.189 0.811 35 H 0.269 0.731 36 H 0.188 0.812 37 H 0.191 0.809 38 H 0.181 0.819 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 22.130 -9.102 6.281 24.740 hybrid contribution -0.732 2.207 0.575 2.396 sum 21.398 -6.895 6.856 23.504 Atomic orbital electron populations 1.70005 1.08256 1.28842 1.50340 1.25830 0.95592 1.03049 0.93130 0.85717 0.79702 0.77995 0.79735 1.18524 1.20344 1.16536 1.20584 0.89022 0.94093 1.53472 0.94091 1.21482 0.98479 0.91230 1.00207 1.85262 0.96812 1.16316 1.91340 1.21989 0.96907 0.96454 1.07689 1.21336 0.97371 0.94856 1.02055 1.21430 0.91604 1.00907 0.98929 1.21414 1.01697 0.90310 0.97782 1.22040 0.91642 1.01554 1.03107 1.16986 0.91914 0.82092 1.03550 1.53295 1.41155 1.21283 1.64129 1.01350 0.73120 0.71454 0.73441 1.93584 1.67384 1.48237 1.87054 1.93500 1.35257 1.85608 1.80124 1.30708 1.04881 1.18218 1.24784 1.21125 0.95193 0.88950 0.95648 1.21562 1.00054 1.03862 0.93678 1.18225 0.95733 0.94873 0.78439 1.91544 1.96481 1.89175 1.33935 1.21515 0.99543 1.01615 0.97191 1.21008 0.95820 0.92339 0.92530 0.91751 0.93374 0.93494 0.86330 0.82798 0.81329 0.81056 0.73126 0.81228 0.80935 0.81899 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.19 13.96 21.45 0.30 -55.89 16 2 C 0.02 1.38 5.47 84.65 0.46 1.84 16 3 Si 0.95 40.79 27.47 68.60 1.88 42.67 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 7 C -0.53 -29.70 9.68 25.60 0.25 -29.45 16 8 H 0.04 2.57 7.96 -2.92 -0.02 2.55 16 9 C 0.03 1.54 3.16 71.24 0.23 1.76 16 10 S -0.14 -5.61 20.74 -56.49 -1.17 -6.78 16 11 C -0.11 -3.58 6.12 22.70 0.14 -3.44 16 12 C -0.13 -3.73 9.36 22.39 0.21 -3.52 16 13 C -0.11 -2.18 10.04 22.28 0.22 -1.96 16 14 C -0.09 -1.55 10.04 22.29 0.22 -1.33 16 15 C -0.16 -3.39 8.53 22.38 0.19 -3.20 16 16 C 0.16 4.16 6.26 38.24 0.24 4.40 16 17 N -1.05 -26.48 5.47 -50.95 -0.28 -26.76 16 18 S 2.71 63.49 5.52 -56.49 -0.31 63.18 16 19 O -0.97 -27.41 17.28 -128.00 -2.21 -29.62 16 20 O -0.95 -22.83 14.24 -128.00 -1.82 -24.65 16 21 C -0.70 -14.83 5.81 22.27 0.13 -14.70 16 22 C 0.01 0.18 9.36 22.26 0.21 0.39 16 23 C -0.17 -2.83 10.03 22.31 0.22 -2.61 16 24 C 0.15 2.83 7.30 22.38 0.16 2.99 16 25 F -0.13 -2.64 17.27 44.97 0.78 -1.86 16 26 C -0.18 -3.46 10.03 22.31 0.22 -3.23 16 27 C 0.00 0.05 9.52 22.26 0.21 0.26 16 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.05 2.10 6.81 -2.39 -0.02 2.08 16 30 H 0.05 2.02 7.18 -2.39 -0.02 2.00 16 31 H 0.12 3.59 5.88 -2.91 -0.02 3.57 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.17 3.25 5.14 -2.91 -0.01 3.24 16 35 H 0.43 10.93 8.13 -96.75 -0.79 10.14 16 36 H 0.17 2.24 6.99 -2.91 -0.02 2.22 16 37 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.16 3.01 7.61 -2.91 -0.02 2.99 16 Total: -1.00 -71.07 359.63 0.77 -70.30 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.28 Total: 21.21 kcal Atomic # 6 Polarization: -55.12 SS G_CDS: 3.32 Total: -51.79 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: 0.02 Total: -82.65 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -4.03 Total: -54.27 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.67 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -1.48 Total: 56.40 kcal Total: -71.07 0.77 -70.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069900229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.002 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds