Wall clock time and date at job start Tue Mar 31 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35229 * 107.86733 * 179.83656 * 11 10 9 13 13 C 1.40423 * 107.86434 * 0.42228 * 12 11 10 14 14 N 1.40091 * 125.97477 * 179.70961 * 13 12 11 15 15 C 1.34779 * 120.00154 * 0.02562 * 14 13 12 16 16 O 1.21590 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.47637 * 120.00206 * 179.97438 * 15 14 13 18 18 C 1.39705 * 120.12576 * 359.72720 * 17 15 14 19 19 C 1.37791 * 119.88436 * 179.71614 * 18 17 15 20 20 C 1.38712 * 120.14891 * 0.55214 * 19 18 17 21 21 F 1.35099 * 119.86919 * 179.73666 * 20 19 18 22 22 C 1.38582 * 120.25895 * 359.72418 * 20 19 18 23 23 C 1.37995 * 120.11017 * 359.97438 * 22 20 19 24 24 Br 1.89095 * 120.07403 * 179.97438 * 23 22 20 25 25 N 1.31231 * 108.05006 * 359.74421 * 13 12 11 26 26 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 28 28 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 29 29 H 1.08002 * 126.06162 * 359.96722 * 11 10 9 30 30 H 1.08004 * 126.07034 * 180.16321 * 12 11 10 31 31 H 0.97001 * 120.00146 * 179.97438 * 14 13 12 32 32 H 1.07996 * 120.05808 * 0.02562 * 18 17 15 33 33 H 1.07999 * 119.92586 * 180.25425 * 19 18 17 34 34 H 1.07996 * 119.94375 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2625 -5.4440 0.5303 13 6 3.8668 -4.9133 -0.6208 14 7 4.9601 -5.4618 -1.3037 15 6 5.5262 -6.6029 -0.8632 16 8 5.0884 -7.1559 0.1271 17 6 6.6780 -7.1813 -1.5832 18 6 7.1797 -6.5511 -2.7247 19 6 8.2586 -7.0921 -3.3895 20 6 8.8399 -8.2665 -2.9344 21 9 9.8941 -8.7948 -3.5937 22 6 8.3436 -8.8998 -1.8061 23 6 7.2674 -8.3640 -1.1285 24 35 6.5906 -9.2293 0.4106 25 7 3.2287 -3.8132 -0.9445 26 1 -0.4850 -0.8400 0.0004 27 1 0.6281 -2.5591 0.8866 28 1 0.6207 -2.5548 -0.8933 29 1 1.5913 -4.7502 1.7306 30 1 3.5578 -6.3466 1.0448 31 1 5.3092 -5.0209 -2.0940 32 1 6.7258 -5.6389 -3.0826 33 1 8.6495 -6.6033 -4.2696 34 1 8.8003 -9.8136 -1.4560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069967438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:19 Heat of formation + Delta-G solvation = 48.624718 kcal Electronic energy + Delta-G solvation = -23085.045655 eV Core-core repulsion = 19174.491047 eV Total energy + Delta-G solvation = -3910.554607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 367.007 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.51194 -40.99910 -40.07633 -38.42829 -35.07199 -33.78390 -32.76123 -31.80648 -30.61054 -29.74300 -29.42316 -26.40702 -24.52828 -23.52708 -22.89475 -21.70461 -20.59644 -19.75424 -18.38847 -17.62360 -17.22666 -17.16658 -16.36263 -16.22984 -15.59557 -15.39583 -15.05478 -14.45073 -14.23352 -14.11324 -13.88440 -13.81364 -13.43349 -13.17115 -13.03220 -12.48534 -12.26338 -11.90323 -11.71086 -11.20868 -11.17873 -11.01223 -10.82709 -10.50568 -10.19897 -9.99461 -9.54369 -9.25645 -9.09645 -9.02243 -8.60527 -8.25920 -7.57608 -6.60848 -4.35143 0.03622 0.42919 1.20930 2.19103 2.54403 2.70537 3.09362 3.34961 3.38747 3.54335 3.56308 3.67192 3.67641 4.01229 4.28009 4.29666 4.38519 4.57711 4.78046 5.10267 5.13781 5.25788 5.38440 5.42732 5.47407 5.65533 6.04066 6.09991 6.36260 6.44838 6.55317 6.71432 7.23773 7.39985 7.65516 7.78861 8.05176 8.31413 8.48443 8.58633 9.33196 10.76843 Molecular weight = 367.01amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.002387 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.026293 B =11725.527981 C =13036.512926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.316 5.316 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.259 3.741 14 N -0.623 5.623 15 C 0.554 3.446 16 O -0.482 6.482 17 C -0.116 4.116 18 C -0.050 4.050 19 C -0.146 4.146 20 C 0.131 3.869 21 F -0.128 7.128 22 C -0.136 4.136 23 C -0.016 4.016 24 Br 0.010 6.990 25 N -0.300 5.300 26 H 0.267 0.733 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.408 0.592 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.410 -20.173 -4.342 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.098 5.098 11 C -0.099 4.099 12 C -0.313 4.313 13 C 0.006 3.994 14 N -0.271 5.271 15 C 0.339 3.661 16 O -0.354 6.354 17 C -0.121 4.121 18 C -0.069 4.069 19 C -0.165 4.165 20 C 0.110 3.890 21 F -0.106 7.106 22 C -0.157 4.157 23 C -0.097 4.097 24 Br 0.097 6.903 25 N -0.131 5.131 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.185 0.815 30 H 0.181 0.819 31 H 0.245 0.755 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 16.500 -18.226 -3.869 24.888 hybrid contribution 0.763 -1.922 -0.388 2.104 sum 17.263 -20.149 -4.257 26.872 Atomic orbital electron populations 1.70823 1.06792 1.30479 1.45957 1.25925 0.96310 1.02822 0.93121 0.83386 0.74686 0.74326 0.76986 1.21193 1.21231 1.20702 1.22127 0.95409 0.90402 1.56705 0.91781 1.19777 0.86300 0.82823 0.98029 1.48797 1.23283 1.19526 1.18159 1.22575 1.00491 0.90118 0.96699 1.21550 1.02049 1.06289 1.01396 1.19007 0.91366 0.94303 0.94726 1.42283 1.30007 1.24636 1.30208 1.17865 0.83017 0.80403 0.84788 1.90919 1.61496 1.58807 1.24207 1.19681 0.98397 0.96355 0.97707 1.21258 0.94282 0.98967 0.92409 1.21233 0.97461 0.95482 1.02298 1.17778 0.86093 0.93312 0.91797 1.91558 1.53804 1.85757 1.79510 1.21056 0.97141 1.02152 0.95361 1.21752 0.96528 0.95417 0.96051 1.96876 1.86362 1.75255 1.31799 1.77352 1.03523 1.16118 1.16121 0.92227 0.93588 0.94726 0.81454 0.81919 0.75546 0.83401 0.83135 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.10 13.65 55.43 0.76 -25.34 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.67 29.90 -169.99 -5.08 19.58 16 4 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.61 -16.87 9.24 -34.44 -0.32 -17.19 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.25 6.19 5.57 -5.19 -0.03 6.17 16 10 N -0.32 -7.22 3.67 -62.56 -0.23 -7.45 16 11 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 12 C -0.28 -5.36 9.60 -39.83 -0.38 -5.75 16 13 C 0.26 4.99 8.11 -154.44 -1.25 3.74 16 14 N -0.62 -9.11 5.40 -12.05 -0.07 -9.17 16 15 C 0.55 7.64 7.72 -12.42 -0.10 7.54 16 16 O -0.48 -7.70 10.59 5.29 0.06 -7.65 16 17 C -0.12 -1.22 5.88 -104.95 -0.62 -1.83 16 18 C -0.05 -0.38 9.54 -39.20 -0.37 -0.75 16 19 C -0.15 -0.96 10.01 -39.57 -0.40 -1.35 16 20 C 0.13 1.00 7.31 -39.28 -0.29 0.71 16 21 F -0.13 -1.02 17.26 2.25 0.04 -0.98 16 22 C -0.14 -1.10 9.75 -39.54 -0.39 -1.48 16 23 C -0.02 -0.16 6.26 -39.11 -0.24 -0.41 16 24 Br 0.01 0.11 30.39 -68.01 -2.07 -1.96 16 25 N -0.30 -6.74 12.42 31.43 0.39 -6.35 16 26 H 0.27 7.54 7.22 -40.82 -0.29 7.24 16 27 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 28 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 29 H 0.17 2.66 8.06 -52.49 -0.42 2.23 16 30 H 0.16 2.97 5.91 -52.48 -0.31 2.66 16 31 H 0.41 4.71 6.85 -40.82 -0.28 4.43 16 32 H 0.15 0.80 6.40 -52.49 -0.34 0.47 16 33 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -32.58 324.78 -8.51 -41.08 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -2.52 Total: 2.62 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -4.68 Total: -9.28 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.85 Total: -48.32 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.06 Total: -7.65 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.58 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -2.07 Total: -1.96 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.58 -8.51 -41.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069967438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.707 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds