Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99821 * 2 1 4 4 C 1.52996 * 109.46992 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46990 * 65.00220 * 4 3 2 6 6 C 1.46495 * 119.99691 * 274.99620 * 5 4 3 7 7 C 1.50700 * 109.47346 * 275.00211 * 6 5 4 8 8 H 1.07999 * 119.99849 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00201 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00115 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00102 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46953 * 59.99934 * 11 9 7 13 13 H 1.48496 * 109.47132 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47189 * 299.99869 * 11 9 7 15 15 S 1.65602 * 120.00182 * 94.99800 * 5 4 3 16 16 O 1.42105 * 106.40176 * 156.46046 * 15 5 4 17 17 O 1.42095 * 106.40125 * 23.53903 * 15 5 4 18 18 C 1.76205 * 107.21590 * 269.99715 * 15 5 4 19 19 C 1.38258 * 120.00098 * 270.21424 * 18 15 5 20 20 C 1.38211 * 119.99779 * 180.26070 * 19 18 15 21 21 C 1.38256 * 120.00062 * 359.50247 * 20 19 18 22 22 C 1.38215 * 120.00141 * 0.28711 * 21 20 19 23 23 C 1.50700 * 120.00244 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.46773 * 359.97438 * 23 22 21 25 25 F 1.39897 * 109.47450 * 119.99670 * 23 22 21 26 26 F 1.39898 * 109.46871 * 239.99865 * 23 22 21 27 27 C 1.38211 * 119.99732 * 90.00121 * 18 15 5 28 28 H 1.08993 * 109.47356 * 300.00154 * 1 2 3 29 29 H 1.08996 * 109.46915 * 60.00674 * 1 2 3 30 30 H 1.09002 * 109.46486 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47066 * 59.99239 * 3 2 1 32 32 H 1.09000 * 109.46722 * 300.00042 * 3 2 1 33 33 H 1.08995 * 109.47291 * 304.99577 * 4 3 2 34 34 H 1.09001 * 109.46640 * 184.99441 * 4 3 2 35 35 H 1.09000 * 109.47108 * 35.00237 * 6 5 4 36 36 H 1.08999 * 109.47402 * 154.99831 * 6 5 4 37 37 H 0.96999 * 120.00612 * 180.02562 * 10 9 7 38 38 H 1.07998 * 119.99837 * 0.04112 * 19 18 15 39 39 H 1.08002 * 120.00200 * 179.78851 * 20 19 18 40 40 H 1.07999 * 120.00077 * 180.25932 * 21 20 19 41 41 H 1.08001 * 120.00363 * 0.02562 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0015 -0.8954 -1.3758 7 6 5.3001 -1.4247 -0.8239 8 1 6.0337 -0.7423 -0.4209 9 6 5.5521 -2.7803 -0.8344 10 7 4.6590 -3.6113 -1.3257 11 14 7.1620 -3.4364 -0.1510 12 1 7.2819 -3.0603 1.2806 13 1 7.1871 -4.9157 -0.2774 14 1 8.2966 -2.8547 -0.9122 15 16 4.4473 1.5122 -2.5245 16 8 5.3033 0.7104 -3.3269 17 8 4.8441 2.7593 -1.9711 18 6 3.0118 1.8325 -3.4947 19 6 2.6660 0.9742 -4.5220 20 6 1.5430 1.2284 -5.2864 21 6 0.7596 2.3353 -5.0173 22 6 1.1028 3.1910 -3.9876 23 6 0.2492 4.3979 -3.6945 24 9 -0.8241 4.4386 -4.5910 25 9 -0.2385 4.3176 -2.3858 26 9 1.0181 5.5581 -3.8353 27 6 2.2289 2.9393 -3.2259 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5687 0.8427 34 1 3.9784 2.1767 0.0901 35 1 3.1685 -1.3220 -0.8171 36 1 3.9137 -1.1717 -2.4265 37 1 4.8360 -4.5650 -1.3328 38 1 3.2755 0.1070 -4.7293 39 1 1.2748 0.5598 -6.0911 40 1 -0.1203 2.5317 -5.6120 41 1 2.4973 3.6082 -2.4215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070009268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = -234.412631 kcal Electronic energy + Delta-G solvation = -32868.626258 eV Core-core repulsion = 27847.413531 eV Total energy + Delta-G solvation = -5021.212728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.090 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.41180 -47.94339 -47.85058 -39.53470 -37.84491 -36.78891 -35.45900 -35.29460 -32.54067 -32.38136 -31.58547 -29.57690 -26.80205 -26.33274 -25.72523 -23.58700 -22.86025 -22.47690 -21.78222 -19.41164 -18.72575 -18.62244 -18.08874 -17.11751 -16.79884 -16.48745 -16.15063 -15.95575 -15.78411 -15.57449 -14.98345 -14.77737 -14.66217 -14.54013 -14.33170 -14.30975 -14.30116 -14.02372 -13.99501 -13.56168 -13.35421 -12.96262 -12.68495 -12.43923 -12.30939 -12.09824 -11.99534 -11.71776 -11.64057 -11.51394 -11.30435 -11.06223 -10.87336 -10.75522 -10.65605 -10.37316 -10.02062 -9.83066 -9.68702 -9.52755 -9.32677 -8.38988 -8.09638 -6.01627 -4.04903 0.43264 0.73799 0.89811 2.37913 2.96812 3.36603 3.39933 3.42241 3.44034 3.57003 3.75616 4.07106 4.14920 4.20680 4.45089 4.47999 4.56269 4.71473 4.88845 5.11484 5.20401 5.30643 5.32355 5.34111 5.46769 5.50686 5.54968 5.57485 5.66794 5.68231 5.85557 5.86196 5.92396 6.24110 6.39666 6.47951 7.32660 7.39642 7.45006 7.70569 7.95554 8.25364 8.96487 9.59171 11.06873 Molecular weight = 367.09amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.003533 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.808770 B = 7922.628662 C = 8430.331816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.039 3.961 4 C 0.120 3.880 5 N -0.970 5.970 6 C 0.256 3.744 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.275 1.275 15 S 2.679 3.321 16 O -0.933 6.933 17 O -0.972 6.972 18 C -0.674 4.674 19 C 0.019 3.981 20 C -0.139 4.139 21 C -0.029 4.029 22 C -0.212 4.212 23 C 0.511 3.489 24 F -0.178 7.178 25 F -0.175 7.175 26 F -0.175 7.175 27 C 0.024 3.976 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 12.902 -4.522 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.040 4.040 4 C -0.007 4.007 5 N -0.809 5.809 6 C 0.135 3.865 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.201 1.201 15 S 2.765 3.235 16 O -0.923 6.923 17 O -0.963 6.963 18 C -0.756 4.756 19 C 0.000 4.000 20 C -0.157 4.157 21 C -0.047 4.047 22 C -0.214 4.214 23 C 0.457 3.543 24 F -0.159 7.159 25 F -0.156 7.156 26 F -0.156 7.156 27 C 0.005 3.995 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.172 0.828 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.588 12.861 -4.746 17.950 hybrid contribution -0.460 -0.037 0.140 0.482 sum -12.047 12.824 -4.607 18.188 Atomic orbital electron populations 1.22705 0.82356 1.02486 0.99091 1.88132 1.18389 1.26660 1.95100 1.23197 0.95654 0.85545 0.99568 1.21375 0.90769 0.99487 0.89029 1.57374 1.81503 1.19063 1.22992 1.19231 0.98497 0.70820 0.97992 1.21448 1.02593 0.92132 1.40587 0.92248 1.24884 0.96867 0.96731 0.95317 1.69912 1.34548 1.03151 1.45728 0.86619 0.84071 0.77605 0.79501 1.20222 1.21279 1.20059 1.02577 0.74083 0.73123 0.73691 1.93624 1.61013 1.68579 1.69128 1.93509 1.80554 1.43994 1.78202 1.31778 1.24870 1.03938 1.14993 1.21341 0.93792 0.95735 0.89158 1.21346 0.95440 0.97808 1.01149 1.21250 0.98125 0.92095 0.93224 1.20025 0.99809 0.98058 1.03470 1.18213 0.78336 0.83386 0.74336 1.93159 1.57876 1.96705 1.68171 1.93226 1.88691 1.96391 1.37341 1.93234 1.75120 1.51790 1.95437 1.20601 0.89820 0.93700 0.95380 0.94664 0.94822 0.89788 0.92727 0.94317 0.88043 0.88589 0.92418 0.94855 0.92746 0.82819 0.83776 0.83962 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.08 9.02 -35.23 -0.32 -6.40 16 3 C 0.04 0.56 6.28 37.16 0.23 0.80 16 4 C 0.12 1.98 6.13 -4.04 -0.02 1.95 16 5 N -0.97 -19.11 2.75 -115.67 -0.32 -19.43 16 6 C 0.26 6.16 4.94 -5.20 -0.03 6.13 16 7 C -0.53 -14.34 9.38 -34.44 -0.32 -14.66 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 S 2.68 50.42 5.65 -107.50 -0.61 49.81 16 16 O -0.93 -20.80 16.26 -57.17 -0.93 -21.72 16 17 O -0.97 -18.58 15.84 -57.17 -0.91 -19.49 16 18 C -0.67 -10.28 5.97 -39.58 -0.24 -10.52 16 19 C 0.02 0.26 9.52 -39.58 -0.38 -0.12 16 20 C -0.14 -1.50 10.05 -39.58 -0.40 -1.89 16 21 C -0.03 -0.30 9.43 -39.58 -0.37 -0.67 16 22 C -0.21 -2.51 5.37 -104.62 -0.56 -3.07 16 23 C 0.51 5.70 3.32 36.01 0.12 5.82 16 24 F -0.18 -1.83 15.97 2.25 0.04 -1.80 16 25 F -0.18 -2.01 17.24 2.25 0.04 -1.97 16 26 F -0.17 -2.04 17.24 2.25 0.04 -2.00 16 27 C 0.02 0.33 7.93 -39.58 -0.31 0.01 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.52 6.95 -51.93 -0.36 0.16 16 33 H 0.10 1.74 8.11 -51.93 -0.42 1.32 16 34 H 0.10 1.38 6.91 -51.93 -0.36 1.02 16 35 H 0.06 1.46 6.60 -51.93 -0.34 1.11 16 36 H 0.03 0.84 7.61 -51.93 -0.40 0.45 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.15 2.14 7.62 -52.49 -0.40 1.74 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.14 1.08 7.16 -52.49 -0.38 0.71 16 41 H 0.15 1.83 7.62 -52.49 -0.40 1.43 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -32.50 374.23 -7.59 -40.09 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.71 Total: -1.30 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.27 Total: -13.04 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.42 Total: -44.25 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -2.15 Total: -47.61 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.11 Total: -5.77 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 50.42 SS G_CDS: -0.61 Total: 49.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.50 -7.59 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070009268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.322 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds