Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99821 * 2 1 4 4 C 1.52996 * 109.46992 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46990 * 65.00220 * 4 3 2 6 6 C 1.46495 * 119.99691 * 274.99620 * 5 4 3 7 7 C 1.50700 * 109.47346 * 275.00211 * 6 5 4 8 8 H 1.07999 * 119.99849 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00201 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00115 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00102 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46953 * 59.99934 * 11 9 7 13 13 H 1.48496 * 109.47132 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47189 * 299.99869 * 11 9 7 15 15 S 1.65602 * 120.00182 * 94.99800 * 5 4 3 16 16 O 1.42105 * 106.40176 * 156.46046 * 15 5 4 17 17 O 1.42095 * 106.40125 * 23.53903 * 15 5 4 18 18 C 1.76205 * 107.21590 * 269.99715 * 15 5 4 19 19 C 1.38258 * 120.00098 * 270.21424 * 18 15 5 20 20 C 1.38211 * 119.99779 * 180.26070 * 19 18 15 21 21 C 1.38256 * 120.00062 * 359.50247 * 20 19 18 22 22 C 1.38215 * 120.00141 * 0.28711 * 21 20 19 23 23 C 1.50700 * 120.00244 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.46773 * 359.97438 * 23 22 21 25 25 F 1.39897 * 109.47450 * 119.99670 * 23 22 21 26 26 F 1.39898 * 109.46871 * 239.99865 * 23 22 21 27 27 C 1.38211 * 119.99732 * 90.00121 * 18 15 5 28 28 H 1.08993 * 109.47356 * 300.00154 * 1 2 3 29 29 H 1.08996 * 109.46915 * 60.00674 * 1 2 3 30 30 H 1.09002 * 109.46486 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47066 * 59.99239 * 3 2 1 32 32 H 1.09000 * 109.46722 * 300.00042 * 3 2 1 33 33 H 1.08995 * 109.47291 * 304.99577 * 4 3 2 34 34 H 1.09001 * 109.46640 * 184.99441 * 4 3 2 35 35 H 1.09000 * 109.47108 * 35.00237 * 6 5 4 36 36 H 1.08999 * 109.47402 * 154.99831 * 6 5 4 37 37 H 0.96999 * 120.00612 * 180.02562 * 10 9 7 38 38 H 1.07998 * 119.99837 * 0.04112 * 19 18 15 39 39 H 1.08002 * 120.00200 * 179.78851 * 20 19 18 40 40 H 1.07999 * 120.00077 * 180.25932 * 21 20 19 41 41 H 1.08001 * 120.00363 * 0.02562 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0015 -0.8954 -1.3758 7 6 5.3001 -1.4247 -0.8239 8 1 6.0337 -0.7423 -0.4209 9 6 5.5521 -2.7803 -0.8344 10 7 4.6590 -3.6113 -1.3257 11 14 7.1620 -3.4364 -0.1510 12 1 7.2819 -3.0603 1.2806 13 1 7.1871 -4.9157 -0.2774 14 1 8.2966 -2.8547 -0.9122 15 16 4.4473 1.5122 -2.5245 16 8 5.3033 0.7104 -3.3269 17 8 4.8441 2.7593 -1.9711 18 6 3.0118 1.8325 -3.4947 19 6 2.6660 0.9742 -4.5220 20 6 1.5430 1.2284 -5.2864 21 6 0.7596 2.3353 -5.0173 22 6 1.1028 3.1910 -3.9876 23 6 0.2492 4.3979 -3.6945 24 9 -0.8241 4.4386 -4.5910 25 9 -0.2385 4.3176 -2.3858 26 9 1.0181 5.5581 -3.8353 27 6 2.2289 2.9393 -3.2259 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5687 0.8427 34 1 3.9784 2.1767 0.0901 35 1 3.1685 -1.3220 -0.8171 36 1 3.9137 -1.1717 -2.4265 37 1 4.8360 -4.5650 -1.3328 38 1 3.2755 0.1070 -4.7293 39 1 1.2748 0.5598 -6.0911 40 1 -0.1203 2.5317 -5.6120 41 1 2.4973 3.6082 -2.4215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070009268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = -255.796561 kcal Electronic energy + Delta-G solvation = -32869.553535 eV Core-core repulsion = 27847.413531 eV Total energy + Delta-G solvation = -5022.140004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.090 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.27329 -48.78357 -48.73111 -40.51822 -39.07252 -38.35030 -37.01268 -36.86722 -34.54234 -33.36968 -32.57903 -31.05070 -28.47364 -27.25634 -26.97208 -24.63677 -24.60491 -23.49119 -23.16410 -20.50326 -19.59154 -19.53972 -19.47906 -18.56936 -18.46826 -17.73665 -17.48503 -17.26168 -17.04668 -16.70446 -16.45819 -16.03010 -15.78633 -15.64676 -15.45218 -15.20538 -15.16339 -15.06814 -14.88425 -14.87027 -14.45206 -14.38277 -13.94891 -13.84795 -13.60228 -13.46290 -13.38057 -13.23073 -13.15187 -12.91612 -12.74125 -12.54460 -12.53077 -12.28104 -12.09946 -11.88472 -11.81861 -11.67223 -10.80894 -10.57664 -10.49898 -10.35256 -9.75530 -8.12451 -6.22766 -0.71343 -0.45981 -0.21581 1.43136 1.46038 1.48737 1.52821 1.87396 2.22720 2.46116 2.52733 2.74108 2.89599 2.99077 3.19258 3.28390 3.28685 3.55865 3.78949 3.85560 3.95610 4.13291 4.17465 4.24708 4.39902 4.45339 4.53224 4.56479 4.61658 4.70366 4.84562 4.88012 4.91042 4.99303 5.07205 5.39731 5.46099 5.59586 5.75414 5.95554 6.19667 6.40530 6.85206 7.44496 8.94936 Molecular weight = 367.09amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.003533 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.808770 B = 7922.628662 C = 8430.331816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.041 3.959 4 C 0.111 3.889 5 N -0.978 5.978 6 C 0.277 3.723 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.015 3.985 10 N -0.922 5.922 11 Si 0.951 3.049 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.277 1.277 15 S 2.686 3.314 16 O -0.980 6.980 17 O -0.982 6.982 18 C -0.680 4.680 19 C -0.002 4.002 20 C -0.127 4.127 21 C -0.013 4.013 22 C -0.213 4.213 23 C 0.518 3.482 24 F -0.169 7.169 25 F -0.176 7.176 26 F -0.178 7.178 27 C 0.016 3.984 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.043 0.957 36 H 0.014 0.986 37 H 0.265 0.735 38 H 0.142 0.858 39 H 0.180 0.820 40 H 0.179 0.821 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.323 14.098 -5.057 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.037 4.037 4 C -0.014 4.014 5 N -0.817 5.817 6 C 0.154 3.846 7 C -0.586 4.586 8 H 0.071 0.929 9 C -0.185 4.185 10 N -0.562 5.562 11 Si 0.777 3.223 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.202 1.202 15 S 2.779 3.221 16 O -0.970 6.970 17 O -0.972 6.972 18 C -0.768 4.768 19 C -0.021 4.021 20 C -0.145 4.145 21 C -0.031 4.031 22 C -0.215 4.215 23 C 0.464 3.536 24 F -0.150 7.150 25 F -0.158 7.158 26 F -0.160 7.160 27 C -0.003 4.003 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.061 0.939 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.160 0.840 39 H 0.198 0.802 40 H 0.197 0.803 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.431 14.067 -5.225 20.139 hybrid contribution -0.002 -0.311 0.227 0.385 sum -13.433 13.756 -4.998 19.866 Atomic orbital electron populations 1.22854 0.80488 1.03075 1.00547 1.88076 1.20596 1.28036 1.95427 1.23203 0.93767 0.85218 1.01485 1.21612 0.92905 0.99730 0.87201 1.57198 1.82191 1.17353 1.24920 1.18676 0.96546 0.73304 0.96121 1.21830 1.03684 0.92518 1.40533 0.92902 1.25659 0.99988 0.97106 0.95705 1.70009 1.36147 1.03383 1.46699 0.85717 0.80104 0.77289 0.79240 1.19104 1.20389 1.20226 1.01836 0.74638 0.72389 0.73278 1.93562 1.63772 1.69695 1.70001 1.93481 1.81519 1.43652 1.78575 1.30988 1.24157 1.05923 1.15765 1.21451 0.95285 0.95520 0.89825 1.21708 0.93658 0.98241 1.00920 1.21712 0.98504 0.90693 0.92190 1.20163 0.99201 0.98616 1.03514 1.18032 0.78321 0.82866 0.74398 1.93179 1.57375 1.96636 1.67839 1.93228 1.88674 1.96363 1.37502 1.93233 1.75309 1.51961 1.95454 1.20677 0.90327 0.93196 0.96101 0.92528 0.93906 0.89776 0.89590 0.93330 0.89427 0.86732 0.93876 0.96830 0.92589 0.83984 0.80223 0.80346 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -13.31 9.02 -148.98 -1.34 -14.65 16 3 C 0.04 1.15 6.28 71.98 0.45 1.60 16 4 C 0.11 3.70 6.13 86.38 0.53 4.23 16 5 N -0.98 -39.85 2.75 -519.86 -1.43 -41.29 16 6 C 0.28 13.92 4.94 85.63 0.42 14.34 16 7 C -0.55 -30.69 9.38 25.60 0.24 -30.45 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.01 0.84 5.46 84.65 0.46 1.30 16 10 N -0.92 -53.95 13.29 21.45 0.28 -53.67 16 11 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 S 2.69 104.40 5.65 -56.49 -0.32 104.08 16 16 O -0.98 -45.99 16.26 -128.00 -2.08 -48.07 16 17 O -0.98 -38.11 15.84 -128.00 -2.03 -40.13 16 18 C -0.68 -20.66 5.97 22.27 0.13 -20.52 16 19 C 0.00 -0.04 9.52 22.27 0.21 0.17 16 20 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 21 C -0.01 -0.22 9.43 22.27 0.21 -0.01 16 22 C -0.21 -4.44 5.37 -19.86 -0.11 -4.55 16 23 C 0.52 9.98 3.32 71.24 0.24 10.21 16 24 F -0.17 -2.85 15.97 44.97 0.72 -2.13 16 25 F -0.18 -3.56 17.24 44.97 0.78 -2.78 16 26 F -0.18 -3.74 17.24 44.97 0.78 -2.97 16 27 C 0.02 0.42 7.93 22.27 0.18 0.60 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.24 6.95 -2.39 -0.02 1.22 16 33 H 0.09 3.11 8.11 -2.39 -0.02 3.09 16 34 H 0.11 3.29 6.91 -2.39 -0.02 3.28 16 35 H 0.04 2.28 6.60 -2.39 -0.02 2.27 16 36 H 0.01 0.73 7.61 -2.39 -0.02 0.72 16 37 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.14 4.13 7.62 -2.91 -0.02 4.11 16 39 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.18 1.73 7.16 -2.91 -0.02 1.71 16 41 H 0.15 3.61 7.62 -2.91 -0.02 3.59 16 Total: -1.00 -71.98 374.23 2.89 -69.09 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.07 Total: 9.25 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 4.44 Total: -23.33 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -1.15 Total: -94.96 kcal Atomic # 8 Polarization: -97.40 SS G_CDS: -5.45 Total: -102.85 kcal Atomic # 9 Polarization: -10.14 SS G_CDS: 2.27 Total: -7.88 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 104.40 SS G_CDS: -0.32 Total: 104.08 kcal Total: -71.98 2.89 -69.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070009268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.703 kcal (2) G-P(sol) polarization free energy of solvation -71.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds