Wall clock time and date at job start Tue Mar 31 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47110 * 2 1 4 4 C 1.52997 * 109.47522 * 120.00788 * 2 1 3 5 5 N 1.46891 * 109.47302 * 69.29315 * 4 2 1 6 6 C 1.46901 * 111.00032 * 23.26979 * 5 4 2 7 7 C 1.50696 * 109.47444 * 65.54051 * 6 5 4 8 8 O 1.21287 * 119.99672 * 8.20332 * 7 6 5 9 9 N 1.34774 * 120.00378 * 188.20514 * 7 6 5 10 10 C 1.46503 * 119.99582 * 359.97438 * 9 7 6 11 11 C 1.46503 * 120.00344 * 179.97438 * 9 7 6 12 12 C 1.50701 * 109.46766 * 90.00105 * 11 9 7 13 13 H 1.07997 * 120.00136 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99449 * 180.02562 * 12 11 9 15 15 N 1.31523 * 119.99592 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00365 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47199 * 90.00389 * 16 14 12 18 18 H 1.48506 * 109.47367 * 210.00381 * 16 14 12 19 19 H 1.48494 * 109.47174 * 330.00086 * 16 14 12 20 20 C 1.46902 * 111.00547 * 259.31131 * 5 4 2 21 21 C 1.52996 * 109.47267 * 263.05075 * 20 5 4 22 22 H 1.08997 * 109.47035 * 301.85627 * 21 20 5 23 23 O 1.42902 * 109.47350 * 61.85905 * 21 20 5 24 24 C 1.50701 * 109.46915 * 181.85748 * 21 20 5 25 25 C 1.38248 * 119.97459 * 100.00120 * 24 21 20 26 26 C 1.38195 * 120.02497 * 180.02562 * 25 24 21 27 27 C 1.38458 * 119.97429 * 0.23270 * 26 25 24 28 28 F 1.35102 * 120.02662 * 179.72369 * 27 26 25 29 29 C 1.38457 * 119.95068 * 359.49448 * 27 26 25 30 30 C 1.38201 * 119.97450 * 0.52524 * 29 27 26 31 31 H 1.09005 * 109.46896 * 303.39897 * 1 2 3 32 32 H 1.08994 * 109.47221 * 63.39882 * 1 2 3 33 33 H 1.08995 * 109.47154 * 183.39822 * 1 2 3 34 34 H 1.09005 * 109.46971 * 240.00437 * 2 1 3 35 35 H 1.08996 * 109.47076 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47454 * 300.00395 * 3 2 1 37 37 H 1.09003 * 109.46736 * 60.00893 * 3 2 1 38 38 H 1.09000 * 109.46726 * 309.29689 * 4 2 1 39 39 H 1.08994 * 109.47417 * 189.29844 * 4 2 1 40 40 H 1.09004 * 109.47388 * 185.54046 * 6 5 4 41 41 H 1.09007 * 109.47052 * 305.54072 * 6 5 4 42 42 H 1.09006 * 109.46884 * 90.00229 * 10 9 7 43 43 H 1.08999 * 109.46764 * 209.99551 * 10 9 7 44 44 H 1.08994 * 109.47546 * 330.00052 * 10 9 7 45 45 H 1.08994 * 109.47207 * 209.99953 * 11 9 7 46 46 H 1.08998 * 109.46662 * 330.00445 * 11 9 7 47 47 H 0.96997 * 119.99883 * 179.97438 * 15 14 12 48 48 H 1.08999 * 109.47025 * 143.04319 * 20 5 4 49 49 H 1.09003 * 109.46451 * 23.04854 * 20 5 4 50 50 H 0.96701 * 113.99775 * 64.83611 * 23 21 20 51 51 H 1.07993 * 119.98640 * 0.02562 * 25 24 21 52 52 H 1.07997 * 120.01216 * 179.97438 * 26 25 24 53 53 H 1.08004 * 120.01751 * 180.25332 * 29 27 26 54 54 H 1.07996 * 119.98751 * 179.75012 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.7417 -2.1557 1.1424 6 6 1.5765 -2.5561 -0.2613 7 6 2.8878 -2.3968 -0.9868 8 8 3.8961 -2.1342 -0.3662 9 7 2.9400 -2.5463 -2.3252 10 6 1.7220 -2.8641 -3.0748 11 6 4.2146 -2.3909 -3.0306 12 6 4.9119 -3.7247 -3.1074 13 1 4.4519 -4.6003 -2.6738 14 6 6.1377 -3.8267 -3.7303 15 7 6.7465 -4.9906 -3.7969 16 14 6.9337 -2.3121 -4.4796 17 1 7.7850 -1.6454 -3.4616 18 1 7.7708 -2.7146 -5.6382 19 1 5.8781 -1.3720 -4.9346 20 6 0.5545 -2.5068 1.9332 21 6 0.9914 -3.0530 3.2939 22 1 1.6336 -3.9214 3.1476 23 8 1.7105 -2.0429 4.0042 24 6 -0.2249 -3.4557 4.0874 25 6 -0.5978 -4.7854 4.1528 26 6 -1.7133 -5.1557 4.8797 27 6 -2.4601 -4.1940 5.5388 28 9 -3.5540 -4.5543 6.2452 29 6 -2.0824 -2.8634 5.4773 30 6 -0.9668 -2.4952 4.7494 31 1 -0.3633 0.5657 0.8580 32 1 -0.3633 0.4601 -0.9188 33 1 -0.3633 -1.0258 0.0609 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6768 1.9562 0.8901 38 1 1.5476 -0.3125 2.1313 39 1 3.1173 -0.5799 1.3360 40 1 1.2602 -3.5982 -0.3072 41 1 0.8218 -1.9262 -0.7324 42 1 1.2316 -1.9396 -3.3800 43 1 1.9810 -3.4469 -3.9587 44 1 1.0471 -3.4419 -2.4434 45 1 4.0293 -2.0192 -4.0383 46 1 4.8438 -1.6824 -2.4919 47 1 7.6087 -5.0626 -4.2355 48 1 -0.0223 -3.2660 1.4050 49 1 -0.0607 -1.6189 2.0785 50 1 1.1778 -1.2695 4.2348 51 1 -0.0173 -5.5348 3.6355 52 1 -2.0047 -6.1944 4.9303 53 1 -2.6619 -2.1128 5.9944 54 1 -0.6744 -1.4569 4.6980 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070036606.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:15 Heat of formation + Delta-G solvation = -106.572050 kcal Electronic energy + Delta-G solvation = -34405.215028 eV Core-core repulsion = 29870.407394 eV Total energy + Delta-G solvation = -4534.807634 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 366.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.90320 -41.46149 -40.49439 -38.99508 -37.44540 -36.47519 -34.75393 -34.64184 -32.47014 -32.02148 -31.10533 -29.31707 -28.63477 -27.91470 -27.21905 -25.74169 -24.33490 -23.98642 -22.92914 -21.96544 -20.91082 -19.82544 -19.13605 -18.88238 -18.15552 -17.67614 -17.65562 -17.32096 -17.08926 -16.60209 -16.44409 -16.17639 -15.97039 -15.63760 -15.38173 -15.24503 -14.99773 -14.77545 -14.56217 -14.45419 -14.11745 -14.00954 -13.87187 -13.80714 -13.62397 -13.35373 -13.26839 -13.14398 -13.08092 -12.97360 -12.71306 -12.57927 -12.46109 -12.40558 -12.19032 -12.02114 -12.00504 -11.87416 -11.74537 -11.70255 -11.45594 -11.13431 -10.82823 -10.45455 -10.07364 -9.60057 -9.32980 -8.96769 -8.33541 -6.37885 0.09271 0.26892 1.31225 1.36028 1.43902 1.90560 2.25187 2.30801 2.56015 2.99131 3.01130 3.28963 3.59257 3.73454 3.76729 3.78348 3.86482 3.95535 4.01120 4.11347 4.19510 4.19987 4.30821 4.31459 4.35304 4.43783 4.49097 4.60015 4.66386 4.69396 4.76053 4.78828 4.83234 4.87803 4.93870 4.95026 4.97081 4.97755 4.99204 5.02230 5.15624 5.17368 5.24564 5.27553 5.39338 5.44815 5.47652 5.54261 5.65841 5.89687 6.03101 6.25371 6.27840 6.63461 6.79599 6.90921 7.23489 7.56187 8.83593 Molecular weight = 366.21amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.002216 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.591200 B =12630.122517 C =13572.339669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C -0.138 4.138 4 C 0.081 3.919 5 N -0.533 5.533 6 C 0.039 3.961 7 C 0.500 3.500 8 O -0.575 6.575 9 N -0.613 5.613 10 C 0.077 3.923 11 C 0.227 3.773 12 C -0.532 4.532 13 H 0.027 0.973 14 C 0.009 3.991 15 N -0.946 5.946 16 Si 0.948 3.052 17 H -0.279 1.279 18 H -0.274 1.274 19 H -0.238 1.238 20 C 0.031 3.969 21 C 0.162 3.838 22 H 0.092 0.908 23 O -0.560 6.560 24 C -0.125 4.125 25 C -0.086 4.086 26 C -0.156 4.156 27 C 0.076 3.924 28 F -0.151 7.151 29 C -0.151 4.151 30 C -0.081 4.081 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.038 0.962 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.014 0.986 47 H 0.268 0.732 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.379 0.621 51 H 0.144 0.856 52 H 0.146 0.854 53 H 0.153 0.847 54 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.342 10.105 14.364 30.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.196 4.196 4 C -0.047 4.047 5 N -0.256 5.256 6 C -0.091 4.091 7 C 0.289 3.711 8 O -0.454 6.454 9 N -0.346 5.346 10 C -0.065 4.065 11 C 0.105 3.895 12 C -0.570 4.570 13 H 0.046 0.954 14 C -0.189 4.189 15 N -0.586 5.586 16 Si 0.771 3.229 17 H -0.204 1.204 18 H -0.199 1.199 19 H -0.161 1.161 20 C -0.097 4.097 21 C 0.102 3.898 22 H 0.110 0.890 23 O -0.367 6.367 24 C -0.126 4.126 25 C -0.104 4.104 26 C -0.175 4.175 27 C 0.057 3.943 28 F -0.129 7.129 29 C -0.170 4.170 30 C -0.099 4.099 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.056 0.944 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.032 0.968 47 H 0.077 0.923 48 H 0.107 0.893 49 H 0.096 0.904 50 H 0.229 0.771 51 H 0.161 0.839 52 H 0.164 0.836 53 H 0.171 0.829 54 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.838 9.454 14.752 29.584 hybrid contribution -0.038 0.377 -0.590 0.701 sum -23.876 9.831 14.161 29.449 Atomic orbital electron populations 1.21996 0.92739 1.02218 1.03210 1.21881 0.97729 0.97253 0.98916 1.21688 0.99878 0.95393 1.02595 1.22170 1.00067 0.85260 0.97179 1.61495 1.37818 1.18248 1.08053 1.22392 0.93502 1.03417 0.89827 1.21153 0.91679 0.76444 0.81873 1.90651 1.38508 1.49403 1.66828 1.47967 1.10140 1.69554 1.06955 1.21942 0.85487 1.01639 0.97437 1.19245 0.82868 0.95021 0.92390 1.21568 1.04580 0.94741 1.36161 0.95446 1.25867 0.97289 0.99409 0.96346 1.70057 1.16773 1.26389 1.45428 0.85717 0.79450 0.79524 0.78246 1.20440 1.19938 1.16082 1.22993 0.90420 1.01978 0.94289 1.20727 0.89389 0.91306 0.88420 0.89046 1.86750 1.41225 1.31551 1.77174 1.20655 0.97807 0.94321 0.99812 1.21098 0.95756 0.96135 0.97375 1.21329 0.96453 1.00355 0.99350 1.18041 0.85790 0.94516 0.95950 1.91481 1.52004 1.92702 1.76749 1.21343 0.99196 0.94476 1.01936 1.21005 0.93147 1.00651 0.95072 0.90768 0.91825 0.91929 0.92973 0.95020 0.92118 0.90880 0.89450 0.94389 0.87498 0.88071 0.90454 0.91642 0.89411 0.93451 0.96769 0.92341 0.89287 0.90360 0.77124 0.83858 0.83589 0.82902 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.74 71.98 0.56 -1.43 16 2 C -0.14 -3.02 2.30 -10.79 -0.02 -3.04 16 3 C -0.14 -2.87 9.18 71.98 0.66 -2.21 16 4 C 0.08 2.00 4.03 86.30 0.35 2.35 16 5 N -0.53 -13.51 4.20 -900.82 -3.78 -17.29 16 6 C 0.04 1.03 3.05 85.56 0.26 1.29 16 7 C 0.50 19.97 5.45 87.66 0.48 20.45 16 8 O -0.58 -29.29 14.73 -3.05 -0.04 -29.34 16 9 N -0.61 -24.60 2.86 -851.13 -2.43 -27.03 16 10 C 0.08 2.12 10.09 127.77 1.29 3.41 16 11 C 0.23 11.20 4.23 85.63 0.36 11.56 16 12 C -0.53 -31.79 9.94 25.60 0.25 -31.53 16 13 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 14 C 0.01 0.52 5.47 84.65 0.46 0.98 16 15 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 16 Si 0.95 45.30 27.47 68.60 1.88 47.19 16 17 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.24 -10.16 6.54 99.48 0.65 -9.50 16 20 C 0.03 0.50 3.85 86.30 0.33 0.83 16 21 C 0.16 2.85 3.48 29.85 0.10 2.95 16 22 H 0.09 2.06 8.00 -2.39 -0.02 2.04 16 23 O -0.56 -11.03 12.24 -148.98 -1.82 -12.85 16 24 C -0.12 -1.74 4.97 -19.86 -0.10 -1.84 16 25 C -0.09 -1.22 9.67 22.26 0.22 -1.00 16 26 C -0.16 -2.24 10.03 22.31 0.22 -2.02 16 27 C 0.08 1.18 7.30 22.37 0.16 1.34 16 28 F -0.15 -2.68 17.27 44.97 0.78 -1.91 16 29 C -0.15 -1.81 10.03 22.31 0.22 -1.58 16 30 C -0.08 -0.86 9.29 22.26 0.21 -0.65 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.77 4.94 -2.39 -0.01 0.76 16 34 H 0.05 1.46 4.53 -2.38 -0.01 1.45 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.61 6.68 -2.39 -0.02 1.59 16 39 H 0.04 1.32 7.40 -2.39 -0.02 1.30 16 40 H 0.11 2.54 7.49 -2.39 -0.02 2.52 16 41 H 0.10 2.04 3.85 -2.38 -0.01 2.03 16 42 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 44 H 0.09 1.86 6.66 -2.39 -0.02 1.84 16 45 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 46 H 0.01 0.76 6.85 -2.39 -0.02 0.74 16 47 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 48 H 0.09 1.22 7.46 -2.39 -0.02 1.20 16 49 H 0.08 0.88 6.31 -2.39 -0.02 0.86 16 50 H 0.38 4.12 7.19 -74.06 -0.53 3.59 16 51 H 0.14 1.77 8.03 -2.91 -0.02 1.74 16 52 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 53 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 54 H 0.16 0.76 6.71 -2.91 -0.02 0.74 16 Total: -1.00 -84.62 422.21 1.22 -83.40 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.33 Total: 18.47 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 6.02 Total: -0.15 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -5.91 Total: -104.82 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.87 Total: -42.19 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.19 kcal Total: -84.62 1.22 -83.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070036606.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.175 kcal (2) G-P(sol) polarization free energy of solvation -84.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds