Wall clock time and date at job start Tue Mar 31 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35947 * 116.99954 * 2 1 4 4 C 1.38734 * 120.02911 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.97063 * 179.97438 * 4 3 2 6 6 C 1.38480 * 120.03079 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.97040 * 180.02562 * 6 5 4 8 8 C 1.38428 * 120.05796 * 359.78439 * 6 5 4 9 9 C 1.38175 * 120.03123 * 0.46891 * 8 6 5 10 10 C 1.50703 * 120.01538 * 179.78928 * 9 8 6 11 11 S 1.81401 * 109.47002 * 269.72183 * 10 9 8 12 12 C 1.81397 * 102.99785 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47105 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99838 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00230 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00228 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47454 * 89.99601 * 16 15 13 18 18 H 1.08000 * 119.99660 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00300 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00006 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47120 * 60.00200 * 21 19 17 23 23 H 1.48499 * 109.46804 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46622 * 299.99892 * 21 19 17 25 25 C 1.46504 * 119.99767 * 359.97438 * 15 13 12 26 26 C 1.52996 * 109.47244 * 90.00502 * 25 15 13 27 27 C 1.47203 * 109.46973 * 180.02562 * 26 25 15 28 28 N 8.59189 * 129.10882 * 172.76016 * 2 1 3 29 29 H 1.09003 * 109.47154 * 299.99655 * 1 2 3 30 30 H 1.08995 * 109.47103 * 59.99896 * 1 2 3 31 31 H 1.09003 * 109.46688 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.01355 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.98822 * 179.97438 * 5 4 3 34 34 H 1.08010 * 119.98548 * 180.23509 * 8 6 5 35 35 H 1.09002 * 109.47152 * 149.72283 * 10 9 8 36 36 H 1.09001 * 109.46980 * 29.72384 * 10 9 8 37 37 H 1.09004 * 109.47371 * 299.99984 * 12 11 10 38 38 H 1.09000 * 109.47527 * 60.00229 * 12 11 10 39 39 H 1.09003 * 109.46988 * 210.00172 * 16 15 13 40 40 H 1.09003 * 109.47269 * 329.99365 * 16 15 13 41 41 H 0.97000 * 120.00006 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.46978 * 210.00163 * 25 15 13 43 43 H 1.09002 * 109.47184 * 329.99670 * 25 15 13 44 44 H 1.09001 * 109.46814 * 299.99271 * 26 25 15 45 45 H 1.08997 * 109.47664 * 59.99958 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9195 3.6052 0.0011 6 6 3.3024 3.6771 0.0016 7 9 3.9157 4.8808 0.0027 8 6 4.0570 2.5165 0.0061 9 6 3.4310 1.2847 0.0003 10 6 4.2529 0.0215 0.0004 11 16 4.5828 -0.4854 -1.7098 12 6 5.5663 -1.9958 -1.5052 13 6 5.9266 -2.5481 -2.8603 14 8 5.5558 -1.9790 -3.8652 15 7 6.6598 -3.6749 -2.9556 16 6 7.0095 -4.2121 -4.2729 17 6 8.3203 -3.6213 -4.7246 18 1 8.8410 -2.9165 -4.0933 19 6 8.8548 -3.9805 -5.9437 20 7 8.2204 -4.8384 -6.7126 21 14 10.4799 -3.2487 -6.5032 22 1 11.5430 -3.6003 -5.5278 23 1 10.8336 -3.7923 -7.8391 24 1 10.3544 -1.7714 -6.5877 25 6 7.1072 -4.3625 -1.7418 26 6 6.0540 -5.3887 -1.3194 27 6 6.5032 -6.0792 -0.0995 28 7 6.8487 -6.6137 0.8402 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2126 2.3195 0.0005 33 1 1.3320 4.5115 0.0011 34 1 5.1355 2.5739 0.0104 35 1 3.7050 -0.7684 0.5142 36 1 5.1970 0.2023 0.5144 37 1 6.4776 -1.7641 -0.9538 38 1 4.9860 -2.7354 -0.9536 39 1 7.1020 -5.2963 -4.2102 40 1 6.2291 -3.9549 -4.9891 41 1 8.5966 -5.0914 -7.5702 42 1 8.0511 -4.8708 -1.9391 43 1 7.2466 -3.6348 -0.9423 44 1 5.1101 -4.8804 -1.1221 45 1 5.9146 -6.1165 -2.1188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071862860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:40 Heat of formation + Delta-G solvation = -61.519461 kcal Electronic energy + Delta-G solvation = -29125.429183 eV Core-core repulsion = 24763.661858 eV Total energy + Delta-G solvation = -4361.767325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.04705 -40.54681 -39.25228 -37.61042 -36.91706 -35.30235 -33.28666 -32.95754 -30.90213 -30.21371 -30.09541 -28.01129 -27.20155 -26.77964 -24.07527 -22.91187 -22.68650 -22.08289 -18.81845 -18.39322 -17.70355 -17.43281 -17.29143 -16.68985 -16.50007 -16.36709 -16.03976 -15.64006 -15.27319 -15.05208 -15.01688 -14.86803 -14.74928 -14.28129 -14.05103 -13.91059 -13.74090 -13.37715 -13.18448 -12.99829 -12.79589 -12.51037 -12.47434 -12.40292 -12.30149 -12.18754 -11.95005 -11.73314 -11.30085 -11.25517 -11.18609 -11.02687 -10.90065 -10.62683 -10.20672 -9.98256 -9.75129 -9.27699 -9.16960 -8.47916 -8.35806 -7.92526 -7.49066 -6.09936 -4.14788 0.58595 0.87960 1.71265 2.59371 2.69294 2.77565 2.89187 3.18859 3.28277 3.30541 3.35382 3.38916 3.61179 3.94073 4.13272 4.19997 4.30321 4.41179 4.62690 4.70997 4.81581 4.87139 4.89938 4.95425 4.98190 5.01052 5.09575 5.15465 5.17029 5.25577 5.31109 5.34917 5.44162 5.54484 5.72274 5.77060 5.77558 5.92023 6.01847 6.35980 6.86071 6.96093 7.31236 7.37748 7.53083 7.85563 8.13954 8.16645 8.76895 8.92415 9.50841 10.98230 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.009011 B = 0.002358 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.492653 B =11872.141227 C =13675.210632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.303 6.303 3 C 0.137 3.863 4 C -0.182 4.182 5 C -0.110 4.110 6 C 0.061 3.939 7 F -0.140 7.140 8 C -0.097 4.097 9 C -0.071 4.071 10 C -0.065 4.065 11 S -0.163 6.163 12 C -0.133 4.133 13 C 0.524 3.476 14 O -0.510 6.510 15 N -0.593 5.593 16 C 0.246 3.754 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.117 3.883 26 C -0.051 4.051 27 C 0.217 3.783 28 N -0.445 5.445 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.048 0.952 41 H 0.265 0.735 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.399 10.655 17.376 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.089 3.911 4 C -0.201 4.201 5 C -0.130 4.130 6 C 0.042 3.958 7 F -0.119 7.119 8 C -0.117 4.117 9 C -0.073 4.073 10 C -0.213 4.213 11 S 0.066 5.934 12 C -0.284 4.284 13 C 0.308 3.692 14 O -0.385 6.385 15 N -0.325 5.325 16 C 0.128 3.872 17 C -0.569 4.569 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.010 4.010 26 C -0.093 4.093 27 C -0.101 4.101 28 N -0.122 5.122 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.251 10.332 17.062 25.108 hybrid contribution 1.082 0.236 0.459 1.199 sum -14.169 10.568 17.521 24.888 Atomic orbital electron populations 1.23128 0.78099 1.04431 1.01332 1.86151 1.21465 1.25905 1.88012 1.18784 0.91466 0.84781 0.96033 1.21054 1.00477 0.91184 1.07379 1.20941 0.92710 0.98762 1.00547 1.17466 0.90771 0.80608 1.07003 1.91502 1.83296 1.42748 1.94320 1.20901 1.01104 0.89863 0.99873 1.18304 0.90160 0.93732 1.05108 1.22236 1.01983 0.97647 0.99400 1.87849 1.68929 1.30348 1.06279 1.23724 1.03461 0.99711 1.01503 1.19400 0.79371 0.81446 0.88937 1.90747 1.52856 1.57621 1.37299 1.48149 1.51575 1.24434 1.08384 1.19383 0.96690 0.93977 0.77169 1.21368 1.05638 1.26443 1.03495 0.92382 1.24907 0.97777 0.94999 0.96208 1.69905 1.38952 1.32848 1.11508 0.86572 0.83450 0.79714 0.77803 1.20247 1.21186 1.20085 1.21330 0.97051 0.94414 0.88192 1.19908 1.00892 0.98997 0.89483 1.29050 0.93320 0.93443 0.94303 1.81167 1.08972 1.09841 1.12202 0.92674 0.92314 0.87868 0.84262 0.84401 0.83624 0.88534 0.89092 0.87671 0.87832 0.94549 0.93429 0.92572 0.88532 0.90738 0.87615 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -2.85 9.54 -19.57 -0.19 -3.03 16 3 C 0.14 1.34 6.66 -39.24 -0.26 1.08 16 4 C -0.18 -1.46 9.04 -39.44 -0.36 -1.81 16 5 C -0.11 -0.91 10.02 -39.53 -0.40 -1.31 16 6 C 0.06 0.61 7.30 -39.42 -0.29 0.32 16 7 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 8 C -0.10 -0.97 9.67 -39.53 -0.38 -1.36 16 9 C -0.07 -0.74 5.15 -104.48 -0.54 -1.28 16 10 C -0.07 -0.66 5.85 36.01 0.21 -0.45 16 11 S -0.16 -2.33 20.86 -107.50 -2.24 -4.57 16 12 C -0.13 -1.73 4.98 36.01 0.18 -1.55 16 13 C 0.52 9.66 7.69 -10.99 -0.08 9.58 16 14 O -0.51 -12.05 15.44 5.55 0.09 -11.96 16 15 N -0.59 -10.64 2.46 -175.05 -0.43 -11.07 16 16 C 0.25 5.77 5.16 -5.19 -0.03 5.74 16 17 C -0.53 -14.09 9.39 -34.44 -0.32 -14.41 16 18 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 C 0.12 1.49 5.17 -4.04 -0.02 1.46 16 26 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 27 C 0.22 2.51 15.43 -20.79 -0.32 2.19 16 28 N -0.44 -6.33 18.53 42.11 0.78 -5.55 16 29 H 0.05 0.21 7.66 -51.93 -0.40 -0.18 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.14 0.74 6.30 -52.49 -0.33 0.41 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 34 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.10 0.90 7.53 -51.92 -0.39 0.51 16 36 H 0.09 0.77 8.08 -51.92 -0.42 0.35 16 37 H 0.11 1.16 7.40 -51.92 -0.38 0.77 16 38 H 0.10 1.03 7.18 -51.92 -0.37 0.65 16 39 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 44 H 0.11 0.84 7.22 -51.93 -0.37 0.47 16 45 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 408.60 15.07 6.16 6.16 Total: -1.00 -34.79 408.60 -7.84 -42.62 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.86 Total: -2.93 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.89 Total: 0.29 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 1.09 Total: -41.31 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.10 Total: -15.00 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.24 Total: -4.57 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.79 -7.84 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071862860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.896 kcal (2) G-P(sol) polarization free energy of solvation -34.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds