Wall clock time and date at job start Tue Mar 31 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35947 * 116.99954 * 2 1 4 4 C 1.38734 * 120.02911 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.97063 * 179.97438 * 4 3 2 6 6 C 1.38480 * 120.03079 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.97040 * 180.02562 * 6 5 4 8 8 C 1.38428 * 120.05796 * 359.78439 * 6 5 4 9 9 C 1.38175 * 120.03123 * 0.46891 * 8 6 5 10 10 C 1.50703 * 120.01538 * 179.78928 * 9 8 6 11 11 S 1.81401 * 109.47002 * 269.72183 * 10 9 8 12 12 C 1.81397 * 102.99785 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47105 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99838 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00230 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00228 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47454 * 89.99601 * 16 15 13 18 18 H 1.08000 * 119.99660 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00300 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00006 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47120 * 60.00200 * 21 19 17 23 23 H 1.48499 * 109.46804 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46622 * 299.99892 * 21 19 17 25 25 C 1.46504 * 119.99767 * 359.97438 * 15 13 12 26 26 C 1.52996 * 109.47244 * 90.00502 * 25 15 13 27 27 C 1.47203 * 109.46973 * 180.02562 * 26 25 15 28 28 N 8.59189 * 129.10882 * 172.76016 * 2 1 3 29 29 H 1.09003 * 109.47154 * 299.99655 * 1 2 3 30 30 H 1.08995 * 109.47103 * 59.99896 * 1 2 3 31 31 H 1.09003 * 109.46688 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.01355 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.98822 * 179.97438 * 5 4 3 34 34 H 1.08010 * 119.98548 * 180.23509 * 8 6 5 35 35 H 1.09002 * 109.47152 * 149.72283 * 10 9 8 36 36 H 1.09001 * 109.46980 * 29.72384 * 10 9 8 37 37 H 1.09004 * 109.47371 * 299.99984 * 12 11 10 38 38 H 1.09000 * 109.47527 * 60.00229 * 12 11 10 39 39 H 1.09003 * 109.46988 * 210.00172 * 16 15 13 40 40 H 1.09003 * 109.47269 * 329.99365 * 16 15 13 41 41 H 0.97000 * 120.00006 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.46978 * 210.00163 * 25 15 13 43 43 H 1.09002 * 109.47184 * 329.99670 * 25 15 13 44 44 H 1.09001 * 109.46814 * 299.99271 * 26 25 15 45 45 H 1.08997 * 109.47664 * 59.99958 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9195 3.6052 0.0011 6 6 3.3024 3.6771 0.0016 7 9 3.9157 4.8808 0.0027 8 6 4.0570 2.5165 0.0061 9 6 3.4310 1.2847 0.0003 10 6 4.2529 0.0215 0.0004 11 16 4.5828 -0.4854 -1.7098 12 6 5.5663 -1.9958 -1.5052 13 6 5.9266 -2.5481 -2.8603 14 8 5.5558 -1.9790 -3.8652 15 7 6.6598 -3.6749 -2.9556 16 6 7.0095 -4.2121 -4.2729 17 6 8.3203 -3.6213 -4.7246 18 1 8.8410 -2.9165 -4.0933 19 6 8.8548 -3.9805 -5.9437 20 7 8.2204 -4.8384 -6.7126 21 14 10.4799 -3.2487 -6.5032 22 1 11.5430 -3.6003 -5.5278 23 1 10.8336 -3.7923 -7.8391 24 1 10.3544 -1.7714 -6.5877 25 6 7.1072 -4.3625 -1.7418 26 6 6.0540 -5.3887 -1.3194 27 6 6.5032 -6.0792 -0.0995 28 7 6.8487 -6.6137 0.8402 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2126 2.3195 0.0005 33 1 1.3320 4.5115 0.0011 34 1 5.1355 2.5739 0.0104 35 1 3.7050 -0.7684 0.5142 36 1 5.1970 0.2023 0.5144 37 1 6.4776 -1.7641 -0.9538 38 1 4.9860 -2.7354 -0.9536 39 1 7.1020 -5.2963 -4.2102 40 1 6.2291 -3.9549 -4.9891 41 1 8.5966 -5.0914 -7.5702 42 1 8.0511 -4.8708 -1.9391 43 1 7.2466 -3.6348 -0.9423 44 1 5.1101 -4.8804 -1.1221 45 1 5.9146 -6.1165 -2.1188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071862860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:39 Heat of formation + Delta-G solvation = -81.587830 kcal Electronic energy + Delta-G solvation = -29126.299413 eV Core-core repulsion = 24763.661858 eV Total energy + Delta-G solvation = -4362.637555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.120 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.81740 -41.18602 -40.69622 -38.24571 -38.00484 -36.70651 -34.88932 -33.97150 -32.21607 -31.38505 -30.83857 -28.78752 -28.42745 -27.72932 -25.32108 -24.61056 -23.37227 -22.82415 -20.17305 -19.06216 -18.82737 -18.35492 -18.19162 -17.99942 -17.97337 -17.38566 -16.93379 -16.62031 -16.36566 -16.33116 -15.99626 -15.67715 -15.64238 -15.48353 -14.98421 -14.78078 -14.70621 -14.47298 -14.31429 -14.01654 -13.72483 -13.66367 -13.58959 -13.53906 -13.26041 -13.10488 -12.98916 -12.88103 -12.72472 -12.71782 -12.49670 -12.15832 -11.87226 -11.82792 -11.81363 -11.68914 -10.91851 -10.69316 -10.57519 -9.99152 -9.51350 -9.05064 -8.56151 -8.17503 -6.29559 -0.16377 0.18810 0.79717 1.40518 1.44020 1.50248 1.66455 1.69786 1.85547 1.85770 2.29468 2.33701 2.45631 2.60183 3.09768 3.15439 3.24587 3.53934 3.68612 3.72638 4.02931 4.04980 4.08113 4.13038 4.17859 4.25593 4.35167 4.40610 4.45154 4.47349 4.58465 4.72239 4.79353 4.84091 4.86215 5.05739 5.08255 5.10518 5.11341 5.23579 5.34226 5.60111 5.69104 5.86650 6.13005 6.36853 6.60962 6.68369 6.80566 7.32484 7.47242 8.89121 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.009011 B = 0.002358 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.492653 B =11872.141227 C =13675.210632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.320 6.320 3 C 0.131 3.869 4 C -0.180 4.180 5 C -0.105 4.105 6 C 0.038 3.962 7 F -0.150 7.150 8 C -0.103 4.103 9 C -0.092 4.092 10 C -0.040 4.040 11 S -0.240 6.240 12 C -0.111 4.111 13 C 0.517 3.483 14 O -0.573 6.573 15 N -0.592 5.592 16 C 0.261 3.739 17 C -0.541 4.541 18 H 0.054 0.946 19 C 0.012 3.988 20 N -0.926 5.926 21 Si 0.956 3.044 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.112 3.888 26 C -0.039 4.039 27 C 0.247 3.753 28 N -0.488 5.488 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.038 0.962 40 H 0.003 0.997 41 H 0.265 0.735 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.137 0.863 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.061 11.024 19.749 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.233 6.233 3 C 0.083 3.917 4 C -0.199 4.199 5 C -0.124 4.124 6 C 0.019 3.981 7 F -0.128 7.128 8 C -0.124 4.124 9 C -0.095 4.095 10 C -0.187 4.187 11 S -0.012 6.012 12 C -0.261 4.261 13 C 0.304 3.696 14 O -0.452 6.452 15 N -0.323 5.323 16 C 0.140 3.860 17 C -0.580 4.580 18 H 0.072 0.928 19 C -0.187 4.187 20 N -0.565 5.565 21 Si 0.781 3.219 22 H -0.187 1.187 23 H -0.208 1.208 24 H -0.206 1.206 25 C -0.013 4.013 26 C -0.080 4.080 27 C -0.071 4.071 28 N -0.166 5.166 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.185 0.815 33 H 0.179 0.821 34 H 0.167 0.833 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.056 0.944 40 H 0.021 0.979 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.127 0.873 44 H 0.154 0.846 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.903 10.674 19.493 27.328 hybrid contribution 1.177 0.153 -0.260 1.215 sum -14.726 10.826 19.233 26.532 Atomic orbital electron populations 1.23404 0.76273 1.05728 1.02485 1.86122 1.23448 1.25883 1.87859 1.18997 0.91569 0.85562 0.95585 1.21371 1.01850 0.90383 1.06271 1.21247 0.92186 0.99937 0.99058 1.17719 0.91678 0.80306 1.08384 1.91473 1.83587 1.43229 1.94551 1.21012 1.01494 0.90046 0.99822 1.18431 0.90821 0.93784 1.06419 1.22180 1.03027 0.97747 0.95745 1.88187 1.69655 1.31917 1.11419 1.23584 1.04963 0.99543 0.98028 1.20277 0.78140 0.80669 0.90483 1.90722 1.55133 1.59332 1.40007 1.47995 1.51447 1.24782 1.08116 1.18825 0.93980 0.93854 0.79325 1.21725 1.06654 1.26015 1.03593 0.92793 1.25709 1.01032 0.95480 0.96519 1.70012 1.40474 1.34180 1.11881 0.85638 0.80066 0.78383 0.77764 1.18654 1.20759 1.20632 1.21578 0.97354 0.95588 0.86781 1.19835 1.01035 0.98375 0.88739 1.29063 0.91980 0.92354 0.93680 1.81215 1.10366 1.11267 1.13779 0.90778 0.91820 0.86665 0.81490 0.82149 0.83274 0.87408 0.87246 0.84897 0.83872 0.94389 0.97854 0.92562 0.89547 0.87340 0.84572 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.39 9.54 -92.95 -0.89 -6.28 16 3 C 0.13 2.34 6.66 22.49 0.15 2.49 16 4 C -0.18 -2.48 9.04 22.36 0.20 -2.28 16 5 C -0.10 -1.56 10.02 22.30 0.22 -1.34 16 6 C 0.04 0.74 7.30 22.37 0.16 0.91 16 7 F -0.15 -3.21 17.27 44.97 0.78 -2.43 16 8 C -0.10 -2.01 9.67 22.30 0.22 -1.79 16 9 C -0.09 -1.80 5.15 -19.77 -0.10 -1.91 16 10 C -0.04 -0.73 5.85 71.24 0.42 -0.31 16 11 S -0.24 -6.69 20.86 -56.49 -1.18 -7.87 16 12 C -0.11 -2.60 4.98 71.24 0.35 -2.25 16 13 C 0.52 18.79 7.69 87.66 0.67 19.46 16 14 O -0.57 -27.96 15.44 -3.04 -0.05 -28.00 16 15 N -0.59 -20.82 2.46 -826.13 -2.03 -22.85 16 16 C 0.26 12.52 5.16 85.63 0.44 12.96 16 17 C -0.54 -29.17 9.39 25.60 0.24 -28.93 16 18 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 19 C 0.01 0.66 5.46 84.65 0.46 1.12 16 20 N -0.93 -53.80 13.29 21.45 0.28 -53.52 16 21 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.11 2.56 5.17 86.38 0.45 3.01 16 26 C -0.04 -0.65 6.03 28.79 0.17 -0.48 16 27 C 0.25 5.03 15.43 89.46 1.38 6.41 16 28 N -0.49 -12.93 18.53 19.99 0.37 -12.56 16 29 H 0.07 0.35 7.66 -2.39 -0.02 0.34 16 30 H 0.06 0.48 7.66 -2.39 -0.02 0.47 16 31 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.17 1.25 6.30 -2.91 -0.02 1.23 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.11 1.72 7.53 -2.39 -0.02 1.70 16 36 H 0.11 1.56 8.08 -2.39 -0.02 1.54 16 37 H 0.13 2.41 7.40 -2.39 -0.02 2.39 16 38 H 0.14 2.21 7.18 -2.39 -0.02 2.19 16 39 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 40 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 41 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.09 2.21 8.07 -2.38 -0.02 2.19 16 43 H 0.11 1.79 6.44 -2.39 -0.02 1.77 16 44 H 0.14 1.56 7.22 -2.39 -0.02 1.54 16 45 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -80.14 408.60 6.90 -73.24 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.03 Total: 6.12 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 6.55 Total: 8.31 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -1.37 Total: -88.93 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.93 Total: -34.28 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -6.69 SS G_CDS: -1.18 Total: -7.87 kcal Total: -80.14 6.90 -73.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071862860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.350 kcal (2) G-P(sol) polarization free energy of solvation -80.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds