Wall clock time and date at job start Tue Mar 31 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99709 * 2 1 4 4 H 1.48501 * 109.46794 * 269.99655 * 3 2 1 5 5 H 1.48498 * 109.47370 * 29.99277 * 3 2 1 6 6 H 1.48495 * 109.47211 * 150.00199 * 3 2 1 7 7 C 1.37869 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00776 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99685 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47717 * 180.02562 * 10 9 7 12 12 S 1.81393 * 109.47700 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54292 * 68.37181 * 12 11 10 14 14 O 1.42107 * 110.54046 * 291.62375 * 12 11 10 15 15 N 1.65600 * 104.45261 * 180.02562 * 12 11 10 16 16 C 1.46497 * 119.99994 * 64.99887 * 15 12 11 17 17 C 1.50697 * 109.47244 * 165.00325 * 16 15 12 18 18 C 1.34719 * 125.66621 * 89.99352 * 17 16 15 19 19 C 1.40955 * 107.03346 * 180.02562 * 18 17 16 20 20 C 1.35950 * 106.73713 * 359.97438 * 19 18 17 21 21 C 1.47781 * 125.92851 * 179.97438 * 20 19 18 22 22 C 1.39582 * 120.15591 * 309.97318 * 21 20 19 23 23 C 1.37942 * 119.87349 * 180.02562 * 22 21 20 24 24 C 1.38386 * 120.20078 * 0.02562 * 23 22 21 25 25 C 1.38300 * 120.31402 * 359.71551 * 24 23 22 26 26 C 1.38209 * 120.12285 * 0.56072 * 25 24 23 27 27 F 1.35104 * 120.09848 * 179.71633 * 26 25 24 28 28 O 1.34330 * 125.66293 * 270.28696 * 17 16 15 29 29 H 0.97001 * 120.00210 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47161 * 60.00416 * 9 7 2 31 31 H 1.08997 * 109.47137 * 300.00436 * 9 7 2 32 32 H 1.09001 * 109.47282 * 59.99923 * 10 9 7 33 33 H 1.09003 * 109.46792 * 300.00237 * 10 9 7 34 34 H 1.09001 * 109.46983 * 59.99525 * 11 10 9 35 35 H 1.08997 * 109.46764 * 300.00255 * 11 10 9 36 36 H 0.96999 * 119.99568 * 245.00150 * 15 12 11 37 37 H 1.08992 * 109.47307 * 44.99868 * 16 15 12 38 38 H 1.09006 * 109.46913 * 284.99987 * 16 15 12 39 39 H 1.08004 * 126.48716 * 359.97438 * 18 17 16 40 40 H 1.08004 * 126.62733 * 180.02562 * 19 18 17 41 41 H 1.08003 * 120.05754 * 0.05210 * 22 21 20 42 42 H 1.08006 * 119.89806 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.83688 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.93539 * 180.30345 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6365 0.0001 12 16 6.1563 -4.3466 -0.0005 13 8 5.8602 -4.9798 -1.2377 14 8 5.8602 -4.9807 1.2363 15 7 7.8059 -4.2017 0.0003 16 6 8.4881 -3.6040 1.1508 17 6 9.9608 -3.9156 1.0791 18 6 10.8944 -3.1614 0.4670 19 6 12.1313 -3.8151 0.6394 20 6 11.8813 -4.9435 1.3552 21 6 12.8845 -5.9443 1.7747 22 6 13.7798 -6.4727 0.8432 23 6 14.7135 -7.4069 1.2410 24 6 14.7647 -7.8219 2.5602 25 6 13.8850 -7.2997 3.4909 26 6 12.9405 -6.3672 3.1056 27 9 12.0776 -5.8616 4.0140 28 8 10.5598 -4.9943 1.6101 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6796 0.8895 31 1 3.8745 -0.6807 -0.8905 32 1 3.6579 -3.1505 -0.8896 33 1 3.6585 -3.1500 0.8903 34 1 5.9149 -2.1225 0.8901 35 1 5.9149 -2.1227 -0.8899 36 1 8.3204 -4.5125 -0.7610 37 1 8.0744 -4.0142 2.0719 38 1 8.3443 -2.5236 1.1374 39 1 10.7267 -2.2323 -0.0574 40 1 13.0919 -3.4830 0.2742 41 1 13.7418 -6.1503 -0.1869 42 1 15.4061 -7.8164 0.5205 43 1 15.4978 -8.5540 2.8652 44 1 13.9336 -7.6243 4.5198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071897462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:24 Heat of formation + Delta-G solvation = -84.693206 kcal Electronic energy + Delta-G solvation = -29052.071473 eV Core-core repulsion = 24591.580597 eV Total energy + Delta-G solvation = -4460.490876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.109 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.34209 -42.95863 -39.40243 -37.03230 -35.97889 -35.74120 -34.83927 -33.63335 -32.55544 -32.23068 -31.16943 -29.39688 -28.40836 -25.93743 -23.66732 -23.64032 -22.97004 -21.93885 -20.78192 -20.53981 -19.39054 -18.55156 -17.87768 -17.41628 -17.06152 -16.91612 -16.69097 -16.18727 -16.00069 -15.87193 -15.60322 -15.16216 -14.79535 -14.55921 -14.41623 -14.19493 -14.10090 -13.70517 -13.49398 -13.25172 -12.96741 -12.89066 -12.63594 -12.47319 -12.36239 -12.17351 -11.97598 -11.93496 -11.88548 -11.71306 -11.60007 -11.01855 -10.96486 -10.37537 -10.12430 -10.04587 -9.91178 -9.86267 -9.48608 -9.40675 -9.27285 -8.59793 -8.58534 -6.09281 -4.08759 0.19780 0.31084 0.58637 1.30871 2.12716 2.34432 2.81929 3.02300 3.25610 3.33327 3.34944 3.62825 3.81223 3.90753 4.15580 4.23855 4.32020 4.39235 4.43011 4.57434 4.61043 4.68324 4.79593 4.94204 4.99250 5.05224 5.07886 5.24350 5.32282 5.38771 5.41323 5.45881 5.50935 5.58546 5.67822 5.72080 5.77120 6.06267 6.11702 6.21845 6.23635 6.64336 6.68907 6.73070 7.10711 7.24753 7.69830 8.46516 8.95127 9.51663 11.03975 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.001666 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.294154 B =16800.466148 C =17124.398070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.098 4.098 11 C -0.615 4.615 12 S 2.603 3.397 13 O -0.956 6.956 14 O -0.956 6.956 15 N -1.123 6.123 16 C 0.195 3.805 17 C -0.011 4.011 18 C -0.187 4.187 19 C -0.182 4.182 20 C 0.023 3.977 21 C -0.055 4.055 22 C -0.064 4.064 23 C -0.130 4.130 24 C -0.080 4.080 25 C -0.155 4.155 26 C 0.122 3.878 27 F -0.128 7.128 28 O -0.155 6.155 29 H 0.264 0.736 30 H 0.020 0.980 31 H 0.016 0.984 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.418 0.582 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.854 -11.823 2.903 37.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.138 4.138 11 C -0.747 4.747 12 S 2.698 3.302 13 O -0.947 6.947 14 O -0.946 6.946 15 N -0.882 5.882 16 C 0.069 3.931 17 C -0.063 4.063 18 C -0.207 4.207 19 C -0.201 4.201 20 C -0.027 4.027 21 C -0.056 4.056 22 C -0.082 4.082 23 C -0.148 4.148 24 C -0.098 4.098 25 C -0.173 4.173 26 C 0.103 3.897 27 F -0.106 7.106 28 O -0.051 6.051 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.252 0.748 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 34.926 -12.694 3.285 37.306 hybrid contribution 0.701 1.793 -0.241 1.940 sum 35.627 -10.901 3.044 37.382 Atomic orbital electron populations 1.69911 1.06285 1.26983 1.50644 1.25026 0.94759 0.99167 0.94453 0.86773 0.80319 0.83632 0.78506 1.20251 1.21267 1.19052 1.21134 0.89258 0.94788 1.51395 0.90718 1.19534 0.97353 0.90692 0.96742 1.21324 0.86513 1.02994 1.02927 1.30607 1.09647 1.23104 1.11302 1.05317 0.72392 0.78087 0.74382 1.93598 1.82371 1.73611 1.45075 1.93591 1.82672 1.72735 1.45600 1.55896 1.26626 1.78557 1.27107 1.19684 0.84019 0.98863 0.90528 1.22344 0.95247 0.87731 1.00998 1.21627 0.91771 1.02673 1.04641 1.21789 0.99739 0.95265 1.03323 1.20160 0.81437 0.97667 1.03457 1.17800 0.96776 0.98784 0.92268 1.21128 0.93292 0.94843 0.98936 1.21173 0.99200 0.97900 0.96541 1.21197 0.97557 0.98353 0.92709 1.21164 0.96257 0.98131 1.01784 1.17847 0.90295 0.95579 0.85996 1.91560 1.67778 1.85577 1.65670 1.84136 1.19195 1.40413 1.61324 0.92620 0.96137 0.96592 0.90912 0.90862 0.85371 0.85082 0.74771 0.88096 0.88046 0.82496 0.82853 0.84280 0.84516 0.84491 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.53 -14.91 9.66 -34.44 -0.33 -15.24 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.22 16 10 C -0.10 -1.86 5.16 -26.73 -0.14 -1.99 16 11 C -0.61 -8.25 6.07 37.16 0.23 -8.02 16 12 S 2.60 35.42 5.46 -107.50 -0.59 34.84 16 13 O -0.96 -16.04 18.08 -57.54 -1.04 -17.08 16 14 O -0.96 -16.15 17.49 -57.54 -1.01 -17.15 16 15 N -1.12 -11.35 5.88 -11.66 -0.07 -11.42 16 16 C 0.19 1.77 6.66 -5.20 -0.03 1.74 16 17 C -0.01 -0.11 6.71 -35.56 -0.24 -0.35 16 18 C -0.19 -1.58 10.78 -39.80 -0.43 -2.01 16 19 C -0.18 -1.54 10.75 -39.37 -0.42 -1.96 16 20 C 0.02 0.24 6.37 -36.50 -0.23 0.01 16 21 C -0.06 -0.48 5.80 -104.92 -0.61 -1.09 16 22 C -0.06 -0.38 9.70 -39.19 -0.38 -0.76 16 23 C -0.13 -0.56 10.03 -39.63 -0.40 -0.96 16 24 C -0.08 -0.35 10.04 -39.50 -0.40 -0.75 16 25 C -0.15 -0.96 10.01 -39.57 -0.40 -1.36 16 26 C 0.12 1.11 7.28 -39.02 -0.28 0.82 16 27 F -0.13 -1.43 16.81 2.25 0.04 -1.40 16 28 O -0.16 -1.87 10.65 4.60 0.05 -1.82 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 31 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.13 1.41 8.14 -51.92 -0.42 0.99 16 35 H 0.13 1.48 8.14 -51.92 -0.42 1.06 16 36 H 0.42 3.69 8.61 -34.47 -0.30 3.40 16 37 H 0.10 0.97 7.69 -51.93 -0.40 0.57 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.16 0.97 8.06 -52.48 -0.42 0.54 16 40 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 42 H 0.14 0.24 8.06 -52.48 -0.42 -0.18 16 43 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 44 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -38.14 397.50 -10.50 -48.64 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.70 Total: -0.07 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -4.28 Total: -30.29 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.71 Total: -38.23 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -2.00 Total: -36.05 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 35.42 SS G_CDS: -0.59 Total: 34.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.14 -10.50 -48.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071897462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.055 kcal (2) G-P(sol) polarization free energy of solvation -38.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds