Wall clock time and date at job start Tue Mar 31 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99995 * 2 1 4 4 C 1.50703 * 109.47299 * 89.99865 * 3 2 1 5 5 N 1.30795 * 126.24576 * 90.02026 * 4 3 2 6 6 N 1.28680 * 110.29217 * 179.97438 * 5 4 3 7 7 C 1.32300 * 109.48188 * 0.02562 * 6 5 4 8 8 C 1.40819 * 133.46646 * 179.97438 * 7 6 5 9 9 C 1.36014 * 119.22682 * 180.02562 * 8 7 6 10 10 C 1.40550 * 119.74920 * 0.02562 * 9 8 7 11 11 C 1.34954 * 120.36661 * 359.97438 * 10 9 8 12 12 N 1.36065 * 126.24617 * 269.98678 * 4 3 2 13 13 C 1.34773 * 120.00005 * 180.02562 * 2 1 3 14 14 O 1.21590 * 119.99948 * 180.02562 * 13 2 1 15 15 N 1.34773 * 119.99849 * 359.97438 * 13 2 1 16 16 C 1.40040 * 119.99763 * 175.52492 * 15 13 2 17 17 C 1.38905 * 119.99749 * 214.85169 * 16 15 13 18 18 C 1.38017 * 119.99507 * 179.81111 * 17 16 15 19 19 C 1.38897 * 119.99910 * 0.44148 * 18 17 16 20 20 O 1.35785 * 119.99715 * 179.76268 * 19 18 17 21 21 C 1.34812 * 116.99859 * 185.36028 * 20 19 18 22 22 H 1.08002 * 120.00508 * 354.96029 * 21 20 19 23 23 C 1.38627 * 119.99881 * 174.96904 * 21 20 19 24 24 N 1.31579 * 120.00087 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99937 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46830 * 59.99945 * 25 23 21 27 27 H 1.48500 * 109.47021 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47038 * 299.99932 * 25 23 21 29 29 C 1.38902 * 120.00185 * 359.79325 * 19 18 17 30 30 C 1.38005 * 120.00308 * 359.97438 * 29 19 18 31 31 H 1.08998 * 109.47340 * 89.99885 * 1 2 3 32 32 H 1.08999 * 109.46968 * 210.00252 * 1 2 3 33 33 H 1.09005 * 109.47164 * 329.99681 * 1 2 3 34 34 H 1.08999 * 109.46825 * 330.00351 * 3 2 1 35 35 H 1.08996 * 109.46894 * 210.00354 * 3 2 1 36 36 H 1.08000 * 120.38676 * 0.02562 * 8 7 6 37 37 H 1.08003 * 120.12755 * 179.97438 * 9 8 7 38 38 H 1.07995 * 119.81794 * 179.97438 * 10 9 8 39 39 H 1.07999 * 119.74881 * 180.02562 * 11 10 9 40 40 H 0.97003 * 120.00593 * 355.52704 * 15 13 2 41 41 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 42 42 H 1.08004 * 119.99542 * 180.18790 * 18 17 16 43 43 H 0.97002 * 119.99844 * 180.02562 * 24 23 21 44 44 H 1.08004 * 119.99592 * 179.97438 * 29 19 18 45 45 H 1.08003 * 120.00031 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 7 3.4913 1.4000 2.1498 6 7 3.3913 1.9344 3.3161 7 6 2.2610 2.6176 3.3931 8 6 1.6579 3.3810 4.4112 9 6 0.4578 3.9753 4.1732 10 6 -0.1613 3.8198 2.9210 11 6 0.4286 3.0852 1.9548 12 7 1.6325 2.4850 2.1792 13 6 2.1389 -1.1672 -0.0005 14 8 3.3548 -1.1672 -0.0001 15 7 1.4650 -2.3343 -0.0005 16 6 2.1619 -3.5452 -0.0957 17 6 1.6072 -4.6131 -0.7895 18 6 2.2959 -5.8053 -0.8866 19 6 3.5395 -5.9400 -0.2827 20 8 4.2149 -7.1145 -0.3742 21 6 5.3627 -7.2165 0.3255 22 1 5.7485 -6.3598 0.8581 23 6 6.0479 -8.4210 0.3611 24 7 5.5784 -9.4646 -0.2883 25 14 7.6388 -8.5622 1.3301 26 1 7.3767 -8.2561 2.7593 27 1 8.1708 -9.9434 1.2096 28 1 8.6332 -7.5996 0.7920 29 6 4.0920 -4.8737 0.4152 30 6 3.4056 -3.6801 0.5082 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6084 2.0284 -0.5138 35 1 3.1498 1.1384 -0.5139 36 1 2.1426 3.4933 5.3697 37 1 -0.0180 4.5637 4.9438 38 1 -1.1144 4.2908 2.7310 39 1 -0.0558 2.9727 0.9961 40 1 0.4972 -2.3357 0.0654 41 1 0.6387 -4.5095 -1.2559 42 1 1.8660 -6.6346 -1.4286 43 1 6.0577 -10.3075 -0.2630 44 1 5.0588 -4.9787 0.8850 45 1 3.8350 -2.8511 1.0512 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071911729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:03 Heat of formation + Delta-G solvation = 112.094630 kcal Electronic energy + Delta-G solvation = -31603.121626 eV Core-core repulsion = 27203.765967 eV Total energy + Delta-G solvation = -4399.355659 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.86806 -40.51349 -38.80339 -38.58218 -36.90579 -35.76208 -34.44600 -33.88864 -32.13144 -31.71695 -30.64883 -30.11904 -28.16254 -27.71261 -26.16820 -25.10799 -24.67808 -23.66440 -22.46398 -21.99767 -21.23007 -19.81710 -18.81749 -18.25966 -17.79959 -17.66530 -17.21528 -16.97945 -16.61988 -16.29677 -15.92882 -15.44005 -15.26207 -14.57589 -14.41930 -14.28781 -13.90731 -13.56267 -13.51644 -13.42821 -13.19739 -13.10256 -12.89312 -12.80059 -12.53563 -12.45745 -12.43139 -11.83514 -11.67866 -11.65023 -11.49961 -11.40507 -10.94156 -10.75948 -10.70014 -10.38879 -10.02526 -9.87534 -9.62771 -9.16925 -9.11542 -8.62229 -8.50900 -8.12096 -6.85869 -6.37293 -3.94660 0.12662 0.62680 1.84830 2.09509 2.23359 2.35520 2.73499 2.91366 3.19319 3.21363 3.24668 3.27857 3.60076 3.83679 3.89282 3.99108 4.05271 4.22529 4.26592 4.40516 4.51917 4.63988 4.67545 4.95594 5.00872 5.10403 5.16856 5.19983 5.23519 5.32628 5.43300 5.55875 5.64827 5.73488 5.82227 5.83970 5.95513 6.20626 6.24810 6.40133 6.44418 6.58480 6.80561 7.01001 7.15577 7.19167 7.41708 7.52664 7.86303 7.93619 8.08354 8.29849 8.63676 9.08790 9.78276 10.80618 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.001946 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.088003 B =14386.151346 C =15638.065061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.634 5.634 3 C 0.227 3.773 4 C 0.122 3.878 5 N -0.213 5.213 6 N -0.286 5.286 7 C 0.187 3.813 8 C -0.073 4.073 9 C -0.093 4.093 10 C -0.137 4.137 11 C 0.062 3.938 12 N -0.387 5.387 13 C 0.700 3.300 14 O -0.550 6.550 15 N -0.672 5.672 16 C 0.050 3.950 17 C -0.094 4.094 18 C -0.179 4.179 19 C 0.146 3.854 20 O -0.178 6.178 21 C -0.389 4.389 22 H 0.092 0.908 23 C 0.039 3.961 24 N -0.865 5.865 25 Si 0.940 3.060 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.269 1.269 29 C -0.218 4.218 30 C -0.062 4.062 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.396 0.604 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.269 0.731 44 H 0.130 0.870 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.878 29.684 3.886 35.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.374 5.374 3 C 0.101 3.899 4 C -0.141 4.141 5 N -0.053 5.053 6 N -0.133 5.133 7 C -0.061 4.061 8 C -0.094 4.094 9 C -0.118 4.118 10 C -0.158 4.158 11 C -0.061 4.061 12 N -0.068 5.068 13 C 0.402 3.598 14 O -0.424 6.424 15 N -0.321 5.321 16 C -0.043 4.043 17 C -0.115 4.115 18 C -0.199 4.199 19 C 0.092 3.908 20 O -0.081 6.081 21 C -0.465 4.465 22 H 0.109 0.891 23 C -0.165 4.165 24 N -0.500 5.500 25 Si 0.765 3.235 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.194 1.194 29 C -0.238 4.238 30 C -0.082 4.082 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.145 0.855 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.231 0.769 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.079 0.921 44 H 0.148 0.852 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.456 28.487 3.998 33.141 hybrid contribution -1.134 0.612 0.307 1.325 sum -17.590 29.099 4.305 34.274 Atomic orbital electron populations 1.21793 0.79871 1.02806 1.02141 1.47072 1.06104 1.04517 1.79671 1.19473 1.00508 0.84392 0.85566 1.25615 0.89932 0.99440 0.99109 1.74421 1.17989 1.15034 0.97849 1.75109 1.13959 1.11851 1.12360 1.22449 0.93468 1.02952 0.87254 1.20343 0.95418 0.95952 0.97728 1.21187 0.94471 0.98793 0.97325 1.20948 1.01658 1.00158 0.93072 1.21631 0.85431 0.97110 1.01920 1.43835 1.15941 1.33901 1.13102 1.15881 0.85546 0.80090 0.78283 1.90998 1.10914 1.85201 1.55290 1.42421 1.09330 1.03451 1.76864 1.17041 0.95940 0.84903 1.06420 1.20293 0.99573 0.92632 0.98998 1.19951 0.94452 0.98178 1.07279 1.19409 0.91170 0.86969 0.93279 1.83970 1.34238 1.28926 1.60975 1.21293 0.97853 0.98211 1.29191 0.89063 1.25270 0.99518 0.94240 0.97493 1.70042 1.38923 1.01406 1.39628 0.85791 0.80284 0.77847 0.79618 1.19495 1.20351 1.19438 1.21121 1.02545 0.93258 1.06896 1.20922 0.93550 0.96886 0.96859 0.91691 0.91153 0.91709 0.88502 0.85544 0.82549 0.83481 0.82703 0.81601 0.76874 0.86916 0.86101 0.92075 0.85202 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 10.24 59.85 0.61 1.04 16 2 N -0.63 -6.50 2.86 -188.74 -0.54 -7.04 16 3 C 0.23 2.12 5.93 -5.19 -0.03 2.09 16 4 C 0.12 1.46 7.72 -154.23 -1.19 0.27 16 5 N -0.21 -3.50 12.19 32.94 0.40 -3.09 16 6 N -0.29 -4.48 12.31 31.14 0.38 -4.10 16 7 C 0.19 2.14 7.92 -156.06 -1.24 0.90 16 8 C -0.07 -0.52 10.11 -39.40 -0.40 -0.92 16 9 C -0.09 -0.36 10.07 -39.51 -0.40 -0.76 16 10 C -0.14 -0.41 9.98 -39.88 -0.40 -0.81 16 11 C 0.06 0.29 10.47 -16.69 -0.17 0.11 16 12 N -0.39 -3.62 2.95 -59.73 -0.18 -3.80 16 13 C 0.70 10.70 8.12 -86.92 -0.71 9.99 16 14 O -0.55 -10.91 13.36 5.29 0.07 -10.84 16 15 N -0.67 -9.74 5.22 -14.18 -0.07 -9.81 16 16 C 0.05 0.92 6.30 -83.61 -0.53 0.40 16 17 C -0.09 -1.69 9.96 -39.42 -0.39 -2.08 16 18 C -0.18 -3.82 9.98 -39.42 -0.39 -4.21 16 19 C 0.15 3.66 6.65 -39.09 -0.26 3.40 16 20 O -0.18 -5.21 9.76 -0.01 0.00 -5.21 16 21 C -0.39 -11.28 9.48 30.88 0.29 -10.99 16 22 H 0.09 2.49 5.20 -52.49 -0.27 2.21 16 23 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 24 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 25 Si 0.94 21.43 29.55 -169.99 -5.02 16.41 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 29 C -0.22 -5.19 9.16 -39.42 -0.36 -5.56 16 30 C -0.06 -1.34 8.69 -39.42 -0.34 -1.68 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.38 6.30 -51.93 -0.33 0.05 16 33 H 0.06 0.21 6.83 -51.93 -0.35 -0.14 16 34 H 0.10 0.45 8.07 -51.93 -0.42 0.03 16 35 H 0.13 1.42 7.42 -51.93 -0.39 1.03 16 36 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.15 0.13 8.06 -52.48 -0.42 -0.29 16 38 H 0.16 -0.05 8.06 -52.49 -0.42 -0.48 16 39 H 0.17 0.19 7.30 -52.49 -0.38 -0.19 16 40 H 0.40 4.18 6.52 -40.82 -0.27 3.91 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.13 3.13 5.63 -52.48 -0.30 2.84 16 45 H 0.13 2.86 6.22 -52.48 -0.33 2.53 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -40.49 385.68 -9.09 -49.58 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.70 Total: 5.06 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -6.00 Total: -7.81 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.75 Total: -53.00 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.07 Total: -16.05 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -40.49 -9.09 -49.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071911729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.671 kcal (2) G-P(sol) polarization free energy of solvation -40.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds