Wall clock time and date at job start Tue Mar 31 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99995 * 2 1 4 4 C 1.50703 * 109.47299 * 89.99865 * 3 2 1 5 5 N 1.30795 * 126.24576 * 90.02026 * 4 3 2 6 6 N 1.28680 * 110.29217 * 179.97438 * 5 4 3 7 7 C 1.32300 * 109.48188 * 0.02562 * 6 5 4 8 8 C 1.40819 * 133.46646 * 179.97438 * 7 6 5 9 9 C 1.36014 * 119.22682 * 180.02562 * 8 7 6 10 10 C 1.40550 * 119.74920 * 0.02562 * 9 8 7 11 11 C 1.34954 * 120.36661 * 359.97438 * 10 9 8 12 12 N 1.36065 * 126.24617 * 269.98678 * 4 3 2 13 13 C 1.34773 * 120.00005 * 180.02562 * 2 1 3 14 14 O 1.21590 * 119.99948 * 180.02562 * 13 2 1 15 15 N 1.34773 * 119.99849 * 359.97438 * 13 2 1 16 16 C 1.40040 * 119.99763 * 175.52492 * 15 13 2 17 17 C 1.38905 * 119.99749 * 214.85169 * 16 15 13 18 18 C 1.38017 * 119.99507 * 179.81111 * 17 16 15 19 19 C 1.38897 * 119.99910 * 0.44148 * 18 17 16 20 20 O 1.35785 * 119.99715 * 179.76268 * 19 18 17 21 21 C 1.34812 * 116.99859 * 185.36028 * 20 19 18 22 22 H 1.08002 * 120.00508 * 354.96029 * 21 20 19 23 23 C 1.38627 * 119.99881 * 174.96904 * 21 20 19 24 24 N 1.31579 * 120.00087 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99937 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46830 * 59.99945 * 25 23 21 27 27 H 1.48500 * 109.47021 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47038 * 299.99932 * 25 23 21 29 29 C 1.38902 * 120.00185 * 359.79325 * 19 18 17 30 30 C 1.38005 * 120.00308 * 359.97438 * 29 19 18 31 31 H 1.08998 * 109.47340 * 89.99885 * 1 2 3 32 32 H 1.08999 * 109.46968 * 210.00252 * 1 2 3 33 33 H 1.09005 * 109.47164 * 329.99681 * 1 2 3 34 34 H 1.08999 * 109.46825 * 330.00351 * 3 2 1 35 35 H 1.08996 * 109.46894 * 210.00354 * 3 2 1 36 36 H 1.08000 * 120.38676 * 0.02562 * 8 7 6 37 37 H 1.08003 * 120.12755 * 179.97438 * 9 8 7 38 38 H 1.07995 * 119.81794 * 179.97438 * 10 9 8 39 39 H 1.07999 * 119.74881 * 180.02562 * 11 10 9 40 40 H 0.97003 * 120.00593 * 355.52704 * 15 13 2 41 41 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 42 42 H 1.08004 * 119.99542 * 180.18790 * 18 17 16 43 43 H 0.97002 * 119.99844 * 180.02562 * 24 23 21 44 44 H 1.08004 * 119.99592 * 179.97438 * 29 19 18 45 45 H 1.08003 * 120.00031 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 7 3.4913 1.4000 2.1498 6 7 3.3913 1.9344 3.3161 7 6 2.2610 2.6176 3.3931 8 6 1.6579 3.3810 4.4112 9 6 0.4578 3.9753 4.1732 10 6 -0.1613 3.8198 2.9210 11 6 0.4286 3.0852 1.9548 12 7 1.6325 2.4850 2.1792 13 6 2.1389 -1.1672 -0.0005 14 8 3.3548 -1.1672 -0.0001 15 7 1.4650 -2.3343 -0.0005 16 6 2.1619 -3.5452 -0.0957 17 6 1.6072 -4.6131 -0.7895 18 6 2.2959 -5.8053 -0.8866 19 6 3.5395 -5.9400 -0.2827 20 8 4.2149 -7.1145 -0.3742 21 6 5.3627 -7.2165 0.3255 22 1 5.7485 -6.3598 0.8581 23 6 6.0479 -8.4210 0.3611 24 7 5.5784 -9.4646 -0.2883 25 14 7.6388 -8.5622 1.3301 26 1 7.3767 -8.2561 2.7593 27 1 8.1708 -9.9434 1.2096 28 1 8.6332 -7.5996 0.7920 29 6 4.0920 -4.8737 0.4152 30 6 3.4056 -3.6801 0.5082 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6084 2.0284 -0.5138 35 1 3.1498 1.1384 -0.5139 36 1 2.1426 3.4933 5.3697 37 1 -0.0180 4.5637 4.9438 38 1 -1.1144 4.2908 2.7310 39 1 -0.0558 2.9727 0.9961 40 1 0.4972 -2.3357 0.0654 41 1 0.6387 -4.5095 -1.2559 42 1 1.8660 -6.6346 -1.4286 43 1 6.0577 -10.3075 -0.2630 44 1 5.0588 -4.9787 0.8850 45 1 3.8350 -2.8511 1.0512 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071911729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:02 Heat of formation + Delta-G solvation = 83.712482 kcal Electronic energy + Delta-G solvation = -31604.352368 eV Core-core repulsion = 27203.765967 eV Total energy + Delta-G solvation = -4400.586402 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.58533 -41.76440 -40.53319 -39.14336 -38.47004 -36.90245 -35.58316 -34.86797 -34.15671 -32.37442 -31.86023 -31.29049 -29.59416 -28.41669 -27.47148 -26.79180 -25.18598 -24.30152 -23.99212 -23.33479 -22.41902 -21.02113 -20.12894 -19.54537 -19.06247 -18.62764 -18.30987 -18.03635 -17.71258 -17.06218 -16.67345 -16.44583 -16.21419 -16.08321 -15.84957 -15.53687 -15.26747 -15.15913 -15.04324 -14.63938 -14.24650 -13.98714 -13.67636 -13.61229 -13.57174 -13.46996 -13.29193 -13.21781 -12.99630 -12.96993 -12.71109 -12.47782 -12.46050 -12.21539 -12.15696 -11.55237 -11.47622 -11.30280 -10.94279 -10.61075 -10.54769 -9.99150 -9.84054 -9.12630 -8.59547 -8.47690 -6.14124 -0.28619 0.04436 0.52020 0.57832 1.22642 1.33004 1.33577 1.43129 1.48392 1.82974 2.05182 2.17211 2.38562 2.81504 2.87910 3.01201 3.14837 3.39934 3.49611 3.51396 3.66549 3.87795 4.06511 4.09707 4.11679 4.13452 4.18739 4.45403 4.47890 4.58067 4.64039 4.68114 4.71454 4.76610 4.81888 4.99339 5.03276 5.05588 5.11869 5.19127 5.27920 5.34858 5.42587 5.45189 5.59801 5.70209 5.77974 5.93252 6.01799 6.17972 6.82950 6.96919 7.46880 7.48993 7.75856 8.74549 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.001946 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.088003 B =14386.151346 C =15638.065061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.622 5.622 3 C 0.228 3.772 4 C 0.119 3.881 5 N -0.283 5.283 6 N -0.361 5.361 7 C 0.183 3.817 8 C -0.117 4.117 9 C -0.057 4.057 10 C -0.125 4.125 11 C 0.048 3.952 12 N -0.383 5.383 13 C 0.692 3.308 14 O -0.605 6.605 15 N -0.660 5.660 16 C 0.081 3.919 17 C -0.074 4.074 18 C -0.176 4.176 19 C 0.106 3.894 20 O -0.225 6.225 21 C -0.414 4.414 22 H 0.093 0.907 23 C -0.019 4.019 24 N -0.915 5.915 25 Si 1.013 2.987 26 H -0.261 1.261 27 H -0.265 1.265 28 H -0.262 1.262 29 C -0.230 4.230 30 C -0.078 4.078 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.097 0.903 36 H 0.160 0.840 37 H 0.187 0.813 38 H 0.205 0.795 39 H 0.211 0.789 40 H 0.420 0.580 41 H 0.172 0.828 42 H 0.134 0.866 43 H 0.274 0.726 44 H 0.111 0.889 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.420 33.707 3.498 41.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.359 5.359 3 C 0.102 3.898 4 C -0.147 4.147 5 N -0.122 5.122 6 N -0.207 5.207 7 C -0.067 4.067 8 C -0.139 4.139 9 C -0.081 4.081 10 C -0.145 4.145 11 C -0.073 4.073 12 N -0.063 5.063 13 C 0.394 3.606 14 O -0.482 6.482 15 N -0.312 5.312 16 C -0.014 4.014 17 C -0.094 4.094 18 C -0.196 4.196 19 C 0.056 3.944 20 O -0.132 6.132 21 C -0.491 4.491 22 H 0.110 0.890 23 C -0.216 4.216 24 N -0.553 5.553 25 Si 0.833 3.167 26 H -0.185 1.185 27 H -0.189 1.189 28 H -0.187 1.187 29 C -0.250 4.250 30 C -0.099 4.099 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.174 0.826 35 H 0.115 0.885 36 H 0.178 0.822 37 H 0.204 0.796 38 H 0.222 0.778 39 H 0.227 0.773 40 H 0.261 0.739 41 H 0.189 0.811 42 H 0.151 0.849 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.107 32.606 3.618 39.560 hybrid contribution 0.128 -0.122 0.453 0.486 sum -21.979 32.485 4.071 39.432 Atomic orbital electron populations 1.22224 0.76154 1.04576 1.04596 1.47062 1.08210 1.02897 1.77749 1.19734 1.00522 0.85140 0.84416 1.25788 0.89636 0.99637 0.99594 1.74231 1.21227 1.17565 0.99142 1.74910 1.17377 1.15324 1.13096 1.22956 0.92708 1.02161 0.88874 1.20624 0.97541 0.98187 0.97536 1.21802 0.92170 0.95546 0.98608 1.21640 1.02769 0.98449 0.91683 1.22643 0.83637 0.96498 1.04491 1.43913 1.17007 1.33593 1.11821 1.16196 0.85096 0.81437 0.77861 1.90986 1.13715 1.86188 1.57350 1.42212 1.10344 1.01921 1.76675 1.17145 0.94425 0.86597 1.03207 1.20746 1.01060 0.90350 0.97260 1.20332 0.93075 0.99986 1.06167 1.19925 0.92856 0.86355 0.95295 1.83927 1.35162 1.31037 1.63056 1.21676 0.98615 0.98884 1.29879 0.89014 1.26476 1.03218 0.93476 0.98479 1.70163 1.41063 1.02142 1.41967 0.84727 0.75403 0.78456 0.78129 1.18541 1.18887 1.18669 1.21060 1.02317 0.94189 1.07386 1.20888 0.95331 0.95562 0.98075 0.88776 0.90919 0.88557 0.82630 0.88451 0.82220 0.79598 0.77806 0.77255 0.73939 0.81084 0.84855 0.91732 0.87125 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 10.24 127.77 1.31 1.65 16 2 N -0.62 -10.97 2.86 -869.31 -2.48 -13.45 16 3 C 0.23 3.85 5.93 85.63 0.51 4.35 16 4 C 0.12 2.83 7.72 137.71 1.06 3.89 16 5 N -0.28 -10.11 12.19 -49.69 -0.61 -10.71 16 6 N -0.36 -12.42 12.31 -55.40 -0.68 -13.11 16 7 C 0.18 4.23 7.92 134.07 1.06 5.29 16 8 C -0.12 -1.52 10.11 22.38 0.23 -1.30 16 9 C -0.06 -0.17 10.07 22.32 0.22 0.05 16 10 C -0.12 0.07 9.98 22.08 0.22 0.29 16 11 C 0.05 0.19 10.47 83.23 0.87 1.06 16 12 N -0.38 -6.43 2.95 -342.89 -1.01 -7.44 16 13 C 0.69 20.41 8.12 179.06 1.45 21.86 16 14 O -0.60 -24.94 13.36 -4.00 -0.05 -24.99 16 15 N -0.66 -17.39 5.22 -317.05 -1.65 -19.04 16 16 C 0.08 2.89 6.30 38.15 0.24 3.13 16 17 C -0.07 -2.43 9.96 22.38 0.22 -2.21 16 18 C -0.18 -7.45 9.98 22.38 0.22 -7.22 16 19 C 0.11 5.62 6.65 22.59 0.15 5.77 16 20 O -0.23 -14.12 9.76 -22.95 -0.22 -14.34 16 21 C -0.41 -25.70 9.48 67.91 0.64 -25.05 16 22 H 0.09 5.44 5.20 -2.91 -0.02 5.42 16 23 C -0.02 -1.11 5.49 84.82 0.47 -0.64 16 24 N -0.92 -57.65 13.67 21.61 0.30 -57.36 16 25 Si 1.01 45.92 29.55 68.60 2.03 47.95 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 29 C -0.23 -11.69 9.16 22.37 0.20 -11.48 16 30 C -0.08 -3.51 8.69 22.37 0.19 -3.32 16 31 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.07 0.39 6.30 -2.39 -0.02 0.37 16 33 H 0.10 -0.05 6.83 -2.38 -0.02 -0.07 16 34 H 0.16 0.69 8.07 -2.39 -0.02 0.67 16 35 H 0.10 2.25 7.42 -2.39 -0.02 2.24 16 36 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.19 -0.85 8.06 -2.91 -0.02 -0.87 16 38 H 0.21 -1.98 8.06 -2.91 -0.02 -2.00 16 39 H 0.21 -1.17 7.30 -2.91 -0.02 -1.19 16 40 H 0.42 6.94 6.52 -92.71 -0.60 6.34 16 41 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 42 H 0.13 5.28 8.06 -2.91 -0.02 5.25 16 43 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.11 5.90 5.63 -2.91 -0.02 5.89 16 45 H 0.11 5.48 6.22 -2.91 -0.02 5.46 16 Total: -1.00 -105.63 385.68 5.36 -100.26 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.47 Total: 16.10 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 9.28 Total: -3.88 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -6.14 Total: -121.11 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.28 Total: -39.33 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -105.63 5.36 -100.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071911729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.977 kcal (2) G-P(sol) polarization free energy of solvation -105.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds