Wall clock time and date at job start Tue Mar 31 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36903 * 120.00358 * 2 1 4 4 H 1.07998 * 120.00028 * 185.20418 * 3 2 1 5 5 C 1.39011 * 119.99890 * 5.20089 * 3 2 1 6 6 N 1.31384 * 120.00480 * 5.20710 * 5 3 2 7 7 Si 1.86802 * 120.00097 * 185.20796 * 5 3 2 8 8 H 1.48500 * 109.47317 * 89.99995 * 7 5 3 9 9 H 1.48497 * 109.47472 * 210.00007 * 7 5 3 10 10 H 1.48501 * 109.46991 * 330.00064 * 7 5 3 11 11 C 1.34780 * 119.99805 * 180.02562 * 2 1 3 12 12 O 1.21627 * 120.00117 * 185.63982 * 11 2 1 13 13 C 1.47464 * 119.99840 * 5.64275 * 11 2 1 14 14 C 1.39724 * 120.03416 * 54.80663 * 13 11 2 15 15 C 1.38169 * 119.73610 * 180.02562 * 14 13 11 16 16 C 1.39948 * 120.05530 * 359.97438 * 15 14 13 17 17 C 1.38904 * 120.11402 * 0.02562 * 16 15 14 18 18 C 1.37779 * 120.04810 * 0.02562 * 17 16 15 19 19 Br 1.89105 * 119.94509 * 180.02562 * 18 17 16 20 20 N 1.38891 * 106.78057 * 180.02562 * 16 15 14 21 21 C 1.46501 * 125.75147 * 180.02562 * 20 16 15 22 22 C 1.34594 * 108.49768 * 359.77246 * 20 16 15 23 23 O 1.21684 * 125.13735 * 180.25564 * 22 20 16 24 24 N 1.34634 * 109.73367 * 0.37864 * 22 20 16 25 25 C 1.46498 * 125.87317 * 179.88746 * 24 22 20 26 26 H 1.08995 * 109.47161 * 175.11126 * 1 2 3 27 27 H 1.08999 * 109.46788 * 295.11696 * 1 2 3 28 28 H 1.09005 * 109.46849 * 55.10838 * 1 2 3 29 29 H 0.96991 * 120.00507 * 180.02562 * 6 5 3 30 30 H 1.08003 * 120.13675 * 0.04102 * 14 13 11 31 31 H 1.08005 * 119.97947 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47451 * 89.99874 * 21 20 16 33 33 H 1.08996 * 109.47111 * 209.99703 * 21 20 16 34 34 H 1.09001 * 109.47305 * 329.99778 * 21 20 16 35 35 H 1.09002 * 109.46828 * 269.69049 * 25 24 22 36 36 H 1.08997 * 109.47346 * 29.68812 * 25 24 22 37 37 H 1.08993 * 109.47641 * 149.69210 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.2262 1.1874 -0.0848 5 6 1.4589 2.3870 0.1091 6 7 0.1612 2.3825 0.3149 7 14 2.3756 4.0080 -0.0368 8 1 2.3993 4.4372 -1.4582 9 1 1.6890 5.0404 0.7805 10 1 3.7674 3.8352 0.4513 11 6 2.1388 -1.1672 -0.0005 12 8 3.3507 -1.1699 0.1030 13 6 1.4068 -2.4411 -0.1267 14 6 0.5416 -2.6467 -1.2043 15 6 -0.1417 -3.8425 -1.3162 16 6 0.0339 -4.8428 -0.3533 17 6 0.8946 -4.6363 0.7172 18 6 1.5773 -3.4452 0.8338 19 35 2.7489 -3.1675 2.2920 20 7 -0.7716 -5.9092 -0.7315 21 6 -0.9047 -7.1786 -0.0123 22 6 -1.4135 -5.5778 -1.8671 23 8 -2.2006 -6.2913 -2.4605 24 7 -1.0512 -4.3386 -2.2490 25 6 -1.5345 -3.6308 -3.4371 26 1 -0.3633 -1.0239 -0.0876 27 1 -0.3633 0.4362 0.9305 28 1 -0.3633 0.5879 -0.8430 29 1 -0.3207 3.2208 0.3907 30 1 0.4074 -1.8742 -1.9471 31 1 1.0287 -5.4099 1.4589 32 1 -1.7138 -7.1016 0.7141 33 1 -1.1274 -7.9761 -0.7210 34 1 0.0281 -7.4025 0.5053 35 1 -0.8784 -3.8463 -4.2804 36 1 -2.5466 -3.9614 -3.6704 37 1 -1.5382 -2.5580 -3.2445 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071915470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:44 Heat of formation + Delta-G solvation = 30.977298 kcal Electronic energy + Delta-G solvation = -25070.859280 eV Core-core repulsion = 21282.999728 eV Total energy + Delta-G solvation = -3787.859552 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 367.032 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.56696 -39.21273 -37.70066 -35.86496 -35.77818 -34.73231 -31.95230 -31.34653 -30.38211 -29.57316 -27.95377 -26.44858 -25.98015 -24.69195 -22.89161 -22.29141 -20.75225 -19.79879 -17.70166 -17.36352 -16.98902 -16.88394 -16.38974 -15.47766 -15.16576 -14.83582 -14.54418 -14.30161 -14.24257 -14.17411 -13.44823 -13.32132 -13.15978 -12.98446 -12.63155 -12.56148 -12.28743 -11.84914 -11.65316 -11.25660 -11.22676 -11.05661 -10.98291 -10.65234 -10.48999 -10.42271 -10.25334 -9.81355 -9.58318 -9.13797 -8.55547 -8.27953 -7.94434 -7.74128 -6.36036 -3.88726 1.06307 1.08527 1.86678 2.05523 2.78896 3.05943 3.11533 3.19696 3.25304 3.38826 3.91068 4.04551 4.38680 4.50274 4.67736 4.93619 4.96044 5.08949 5.11168 5.19924 5.23772 5.29567 5.35207 5.45137 5.49707 5.53373 5.85950 6.08646 6.24309 6.28121 6.32117 6.45932 6.60052 6.97591 7.16362 7.32564 7.46241 7.94271 8.05830 8.37460 9.07582 9.30729 9.86301 10.57020 Molecular weight = 367.03amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.004236 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.236933 B = 6609.157329 C = 8669.420900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.426 5.426 3 C -0.293 4.293 4 H 0.109 0.891 5 C 0.028 3.972 6 N -0.880 5.880 7 Si 0.933 3.067 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.464 3.536 12 O -0.569 6.569 13 C -0.045 4.045 14 C -0.076 4.076 15 C 0.099 3.901 16 C 0.090 3.910 17 C -0.082 4.082 18 C -0.053 4.053 19 Br -0.022 7.022 20 N -0.539 5.539 21 C 0.100 3.900 22 C 0.680 3.320 23 O -0.560 6.560 24 N -0.539 5.539 25 C 0.099 3.901 26 H 0.028 0.972 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.268 0.732 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 -13.173 0.259 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.143 5.143 3 C -0.421 4.421 4 H 0.126 0.874 5 C -0.175 4.175 6 N -0.520 5.520 7 Si 0.759 3.241 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.192 1.192 11 C 0.251 3.749 12 O -0.454 6.454 13 C -0.052 4.052 14 C -0.099 4.099 15 C -0.003 4.003 16 C -0.012 4.012 17 C -0.105 4.105 18 C -0.135 4.135 19 Br 0.064 6.936 20 N -0.261 5.261 21 C -0.041 4.041 22 C 0.383 3.617 23 O -0.437 6.437 24 N -0.261 5.261 25 C -0.042 4.042 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.244 -13.444 0.395 13.835 hybrid contribution -0.205 0.773 -0.392 0.890 sum -3.449 -12.671 0.003 13.132 Atomic orbital electron populations 1.21960 0.80170 0.96847 1.04713 1.43653 1.06144 1.04552 1.59944 1.19882 0.93787 0.81663 1.46731 0.87362 1.25377 0.95856 0.99939 0.96350 1.70139 1.06971 1.27496 1.47380 0.85803 0.79532 0.80393 0.78329 1.20249 1.20800 1.19188 1.17377 0.87462 0.82397 0.87627 1.90679 1.12749 1.85861 1.56157 1.19912 0.95823 0.96163 0.93306 1.20180 0.96048 0.94494 0.99165 1.17951 0.96161 0.95426 0.90726 1.17835 0.98225 0.87724 0.97441 1.19704 0.96757 0.97053 0.97021 1.21343 1.00192 0.95566 0.96425 1.96726 1.61198 1.97208 1.38449 1.44810 1.41413 1.15486 1.24373 1.21745 1.03113 0.82341 0.96880 1.15877 0.82487 0.81959 0.81341 1.91010 1.38473 1.54792 1.59446 1.45013 1.41385 1.15203 1.24509 1.21790 1.00840 0.97223 0.84355 0.95392 0.90470 0.91640 0.92117 0.84004 0.84282 0.91212 0.89516 0.89766 0.91149 0.89453 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.30 8.27 59.85 0.49 2.80 16 2 N -0.43 -10.39 3.02 -123.41 -0.37 -10.77 16 3 C -0.29 -7.71 9.55 -15.00 -0.14 -7.86 16 4 H 0.11 2.99 7.20 -52.49 -0.38 2.61 16 5 C 0.03 0.69 5.42 -17.46 -0.09 0.59 16 6 N -0.88 -21.87 9.52 55.50 0.53 -21.34 16 7 Si 0.93 19.81 29.56 -169.99 -5.02 14.79 16 8 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 11 C 0.46 10.84 6.39 -12.50 -0.08 10.76 16 12 O -0.57 -15.01 15.52 5.25 0.08 -14.93 16 13 C -0.04 -0.84 4.68 -104.93 -0.49 -1.34 16 14 C -0.08 -1.23 7.51 -39.05 -0.29 -1.52 16 15 C 0.10 1.46 6.82 -83.80 -0.57 0.89 16 16 C 0.09 1.26 6.82 -83.78 -0.57 0.69 16 17 C -0.08 -1.12 9.72 -39.50 -0.38 -1.51 16 18 C -0.05 -0.89 6.25 -39.09 -0.24 -1.13 16 19 Br -0.02 -0.38 31.79 -68.01 -2.16 -2.54 16 20 N -0.54 -7.01 3.17 -126.29 -0.40 -7.41 16 21 C 0.10 0.88 10.98 59.85 0.66 1.54 16 22 C 0.68 10.20 8.44 -87.21 -0.74 9.46 16 23 O -0.56 -9.59 17.47 5.20 0.09 -9.49 16 24 N -0.54 -7.44 3.19 -126.35 -0.40 -7.85 16 25 C 0.10 1.02 11.01 59.85 0.66 1.68 16 26 H 0.03 0.52 4.81 -51.93 -0.25 0.27 16 27 H 0.08 1.81 6.89 -51.93 -0.36 1.45 16 28 H 0.07 1.45 7.23 -51.93 -0.38 1.07 16 29 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 30 H 0.14 2.18 7.79 -52.48 -0.41 1.77 16 31 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.73 8.03 -51.93 -0.42 0.32 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -31.60 335.35 -8.26 -39.86 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.85 Total: -0.43 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: -1.80 Total: 15.05 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.65 Total: -47.36 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.17 Total: -24.42 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.16 Total: -2.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.60 -8.26 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071915470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.834 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds