Wall clock time and date at job start Tue Mar 31 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36903 * 120.00358 * 2 1 4 4 H 1.07998 * 120.00028 * 185.20418 * 3 2 1 5 5 C 1.39011 * 119.99890 * 5.20089 * 3 2 1 6 6 N 1.31384 * 120.00480 * 5.20710 * 5 3 2 7 7 Si 1.86802 * 120.00097 * 185.20796 * 5 3 2 8 8 H 1.48500 * 109.47317 * 89.99995 * 7 5 3 9 9 H 1.48497 * 109.47472 * 210.00007 * 7 5 3 10 10 H 1.48501 * 109.46991 * 330.00064 * 7 5 3 11 11 C 1.34780 * 119.99805 * 180.02562 * 2 1 3 12 12 O 1.21627 * 120.00117 * 185.63982 * 11 2 1 13 13 C 1.47464 * 119.99840 * 5.64275 * 11 2 1 14 14 C 1.39724 * 120.03416 * 54.80663 * 13 11 2 15 15 C 1.38169 * 119.73610 * 180.02562 * 14 13 11 16 16 C 1.39948 * 120.05530 * 359.97438 * 15 14 13 17 17 C 1.38904 * 120.11402 * 0.02562 * 16 15 14 18 18 C 1.37779 * 120.04810 * 0.02562 * 17 16 15 19 19 Br 1.89105 * 119.94509 * 180.02562 * 18 17 16 20 20 N 1.38891 * 106.78057 * 180.02562 * 16 15 14 21 21 C 1.46501 * 125.75147 * 180.02562 * 20 16 15 22 22 C 1.34594 * 108.49768 * 359.77246 * 20 16 15 23 23 O 1.21684 * 125.13735 * 180.25564 * 22 20 16 24 24 N 1.34634 * 109.73367 * 0.37864 * 22 20 16 25 25 C 1.46498 * 125.87317 * 179.88746 * 24 22 20 26 26 H 1.08995 * 109.47161 * 175.11126 * 1 2 3 27 27 H 1.08999 * 109.46788 * 295.11696 * 1 2 3 28 28 H 1.09005 * 109.46849 * 55.10838 * 1 2 3 29 29 H 0.96991 * 120.00507 * 180.02562 * 6 5 3 30 30 H 1.08003 * 120.13675 * 0.04102 * 14 13 11 31 31 H 1.08005 * 119.97947 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47451 * 89.99874 * 21 20 16 33 33 H 1.08996 * 109.47111 * 209.99703 * 21 20 16 34 34 H 1.09001 * 109.47305 * 329.99778 * 21 20 16 35 35 H 1.09002 * 109.46828 * 269.69049 * 25 24 22 36 36 H 1.08997 * 109.47346 * 29.68812 * 25 24 22 37 37 H 1.08993 * 109.47641 * 149.69210 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.2262 1.1874 -0.0848 5 6 1.4589 2.3870 0.1091 6 7 0.1612 2.3825 0.3149 7 14 2.3756 4.0080 -0.0368 8 1 2.3993 4.4372 -1.4582 9 1 1.6890 5.0404 0.7805 10 1 3.7674 3.8352 0.4513 11 6 2.1388 -1.1672 -0.0005 12 8 3.3507 -1.1699 0.1030 13 6 1.4068 -2.4411 -0.1267 14 6 0.5416 -2.6467 -1.2043 15 6 -0.1417 -3.8425 -1.3162 16 6 0.0339 -4.8428 -0.3533 17 6 0.8946 -4.6363 0.7172 18 6 1.5773 -3.4452 0.8338 19 35 2.7489 -3.1675 2.2920 20 7 -0.7716 -5.9092 -0.7315 21 6 -0.9047 -7.1786 -0.0123 22 6 -1.4135 -5.5778 -1.8671 23 8 -2.2006 -6.2913 -2.4605 24 7 -1.0512 -4.3386 -2.2490 25 6 -1.5345 -3.6308 -3.4371 26 1 -0.3633 -1.0239 -0.0876 27 1 -0.3633 0.4362 0.9305 28 1 -0.3633 0.5879 -0.8430 29 1 -0.3207 3.2208 0.3907 30 1 0.4074 -1.8742 -1.9471 31 1 1.0287 -5.4099 1.4589 32 1 -1.7138 -7.1016 0.7141 33 1 -1.1274 -7.9761 -0.7210 34 1 0.0281 -7.4025 0.5053 35 1 -0.8784 -3.8463 -4.2804 36 1 -2.5466 -3.9614 -3.6704 37 1 -1.5382 -2.5580 -3.2445 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071915470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:43 Heat of formation + Delta-G solvation = 12.697213 kcal Electronic energy + Delta-G solvation = -25071.651964 eV Core-core repulsion = 21282.999728 eV Total energy + Delta-G solvation = -3788.652236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 367.032 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.70246 -40.79664 -39.12439 -37.14387 -36.84492 -36.58343 -33.69705 -32.71340 -31.62821 -30.58779 -29.20573 -28.21837 -26.94043 -26.38424 -24.28059 -23.51008 -21.89383 -21.26002 -19.10411 -18.83336 -18.48962 -17.99497 -17.89881 -16.92999 -16.34432 -16.23215 -16.07292 -15.86116 -15.42156 -15.10771 -15.03618 -14.77697 -14.42505 -13.94707 -13.89977 -13.54155 -13.43920 -13.38943 -13.33416 -12.80894 -12.67270 -12.51857 -12.46890 -12.27307 -12.10450 -11.84444 -11.47096 -11.19680 -11.02102 -10.85017 -10.36760 -9.84675 -9.48406 -8.96480 -8.23572 -5.86810 -0.22630 -0.14183 0.59171 1.03189 1.39967 1.45263 1.56863 1.65652 1.89213 2.02978 2.25531 2.40534 3.01084 3.14529 3.30004 3.54547 3.76183 3.94425 3.96913 4.21454 4.27193 4.42394 4.45416 4.48560 4.55354 4.68937 4.71547 4.75338 4.91661 5.01255 5.15707 5.20652 5.23556 5.47137 5.50826 5.53292 6.02908 6.05375 6.48232 6.94025 7.17179 7.46077 8.01364 8.67487 Molecular weight = 367.03amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.004236 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.236933 B = 6609.157329 C = 8669.420900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.443 5.443 3 C -0.331 4.331 4 H 0.083 0.917 5 C -0.001 4.001 6 N -0.892 5.892 7 Si 0.991 3.009 8 H -0.268 1.268 9 H -0.273 1.273 10 H -0.275 1.275 11 C 0.468 3.532 12 O -0.607 6.607 13 C -0.073 4.073 14 C -0.068 4.068 15 C 0.097 3.903 16 C 0.102 3.898 17 C -0.061 4.061 18 C -0.061 4.061 19 Br -0.031 7.031 20 N -0.532 5.532 21 C 0.088 3.912 22 C 0.671 3.329 23 O -0.584 6.584 24 N -0.537 5.537 25 C 0.089 3.911 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.273 0.727 30 H 0.146 0.854 31 H 0.176 0.824 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 -14.627 0.220 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.160 5.160 3 C -0.459 4.459 4 H 0.101 0.899 5 C -0.202 4.202 6 N -0.532 5.532 7 Si 0.815 3.185 8 H -0.193 1.193 9 H -0.198 1.198 10 H -0.200 1.200 11 C 0.257 3.743 12 O -0.494 6.494 13 C -0.081 4.081 14 C -0.091 4.091 15 C -0.005 4.005 16 C -0.002 4.002 17 C -0.084 4.084 18 C -0.144 4.144 19 Br 0.055 6.945 20 N -0.253 5.253 21 C -0.051 4.051 22 C 0.374 3.626 23 O -0.463 6.463 24 N -0.258 5.258 25 C -0.051 4.051 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.163 0.837 31 H 0.194 0.806 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.335 -14.922 0.353 15.543 hybrid contribution 0.065 1.037 -0.415 1.119 sum -4.271 -13.885 -0.062 14.527 Atomic orbital electron populations 1.21757 0.78835 0.98219 1.03076 1.43805 1.07011 1.04482 1.60674 1.19780 0.93100 0.83378 1.49662 0.89926 1.26029 0.96669 1.02124 0.95423 1.70226 1.07552 1.28336 1.47048 0.84955 0.77991 0.76931 0.78651 1.19346 1.19779 1.19996 1.17997 0.87257 0.83516 0.85564 1.90632 1.14702 1.86899 1.57202 1.19527 0.97959 0.94794 0.95770 1.20015 0.95447 0.95246 0.98383 1.17885 0.96128 0.95128 0.91349 1.17933 0.97565 0.87776 0.96882 1.19892 0.94912 0.96384 0.97188 1.21410 1.00739 0.96231 0.96010 1.96716 1.61770 1.97374 1.38674 1.45072 1.40154 1.16247 1.23822 1.22153 1.05338 0.80469 0.97153 1.16068 0.82616 0.82091 0.81823 1.90996 1.39597 1.55445 1.60249 1.45246 1.40676 1.15026 1.24878 1.22081 1.01470 0.97811 0.83715 0.92532 0.92578 0.92555 0.91707 0.83654 0.80642 0.89605 0.89227 0.87006 0.89801 0.88800 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.41 8.27 127.77 1.06 6.47 16 2 N -0.44 -22.15 3.02 -662.61 -2.00 -24.15 16 3 C -0.33 -18.07 9.55 84.09 0.80 -17.27 16 4 H 0.08 4.82 7.20 -2.91 -0.02 4.80 16 5 C 0.00 -0.04 5.42 84.95 0.46 0.42 16 6 N -0.89 -44.65 9.52 21.67 0.21 -44.44 16 7 Si 0.99 40.96 29.56 68.60 2.03 42.99 16 8 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 9 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 11 C 0.47 22.32 6.39 86.67 0.55 22.87 16 12 O -0.61 -33.05 15.52 -4.12 -0.06 -33.12 16 13 C -0.07 -2.73 4.68 -20.06 -0.09 -2.83 16 14 C -0.07 -2.12 7.51 22.61 0.17 -1.95 16 15 C 0.10 2.66 6.82 38.33 0.26 2.92 16 16 C 0.10 2.53 6.82 38.60 0.26 2.79 16 17 C -0.06 -1.47 9.72 22.32 0.22 -1.25 16 18 C -0.06 -1.98 6.25 22.59 0.14 -1.84 16 19 Br -0.03 -1.06 31.79 -20.37 -0.65 -1.71 16 20 N -0.53 -12.06 3.17 -671.78 -2.13 -14.19 16 21 C 0.09 1.21 10.98 127.77 1.40 2.61 16 22 C 0.67 18.44 8.44 179.16 1.51 19.95 16 23 O -0.58 -18.80 17.47 -4.30 -0.08 -18.88 16 24 N -0.54 -13.58 3.19 -671.98 -2.14 -15.72 16 25 C 0.09 1.66 11.01 127.77 1.41 3.06 16 26 H 0.06 2.09 4.81 -2.39 -0.01 2.08 16 27 H 0.06 2.67 6.89 -2.39 -0.02 2.65 16 28 H 0.06 2.52 7.23 -2.38 -0.02 2.50 16 29 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 30 H 0.15 4.34 7.79 -2.91 -0.02 4.32 16 31 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.09 1.23 8.03 -2.39 -0.02 1.21 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.64 8.03 -2.39 -0.02 1.62 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -69.76 335.35 4.45 -65.31 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.12 Total: 7.96 kcal Atomic # 6 Polarization: 27.80 SS G_CDS: 8.15 Total: 35.95 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -6.07 Total: -98.51 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.14 Total: -51.99 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -0.65 Total: -1.71 kcal Total: -69.76 4.45 -65.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071915470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.010 kcal (2) G-P(sol) polarization free energy of solvation -69.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds