Wall clock time and date at job start Tue Mar 31 2020 05:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.46636 * 2 1 4 4 O 1.42896 * 109.47387 * 240.00083 * 2 1 3 5 5 C 1.35911 * 117.00287 * 83.46148 * 4 2 1 6 6 C 1.38720 * 120.05721 * 358.01023 * 5 4 2 7 7 C 1.38153 * 119.94940 * 179.67673 * 6 5 4 8 8 C 1.38279 * 120.07553 * 0.61917 * 7 6 5 9 9 C 1.38244 * 120.11292 * 359.67826 * 8 7 6 10 10 C 1.38235 * 120.05213 * 0.02562 * 9 8 7 11 11 Br 1.89092 * 120.03896 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47120 * 119.99373 * 2 1 3 13 13 O 1.21283 * 119.99629 * 102.69699 * 12 2 1 14 14 N 1.34770 * 120.00286 * 282.69345 * 12 2 1 15 15 C 1.46498 * 120.00110 * 355.89236 * 14 12 2 16 16 C 1.50701 * 109.46890 * 94.75048 * 15 14 12 17 17 H 1.08001 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00217 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99938 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00255 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47109 * 90.00195 * 20 18 16 22 22 H 1.48500 * 109.47402 * 210.00033 * 20 18 16 23 23 H 1.48502 * 109.47382 * 330.00213 * 20 18 16 24 24 C 1.46506 * 120.00174 * 175.89253 * 14 12 2 25 25 C 1.53008 * 117.49586 * 16.89965 * 24 14 12 26 26 C 1.53002 * 59.99929 * 252.50861 * 25 24 14 27 27 H 1.09005 * 109.47231 * 306.85807 * 1 2 3 28 28 H 1.08993 * 109.47312 * 66.86238 * 1 2 3 29 29 H 1.08998 * 109.46812 * 186.86166 * 1 2 3 30 30 H 1.07994 * 120.02505 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.95743 * 180.29681 * 7 6 5 32 32 H 1.07994 * 119.94180 * 179.70206 * 8 7 6 33 33 H 1.08001 * 119.97221 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47273 * 214.74722 * 15 14 12 35 35 H 1.09000 * 109.47305 * 334.75190 * 15 14 12 36 36 H 0.97001 * 120.00477 * 179.97438 * 19 18 16 37 37 H 1.08993 * 115.55572 * 162.60357 * 24 14 12 38 38 H 1.09001 * 117.49884 * 359.97438 * 25 24 14 39 39 H 1.08999 * 117.49875 * 145.02094 * 25 24 14 40 40 H 1.08996 * 117.50404 * 252.51098 * 26 25 24 41 41 H 1.09005 * 117.49835 * 107.48545 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0821 0.0544 -2.3119 6 6 1.6669 1.3780 -2.3225 7 6 1.7510 2.1179 -3.4862 8 6 2.2367 1.5370 -4.6432 9 6 2.6456 0.2164 -4.6374 10 6 2.5693 -0.5268 -3.4744 11 35 3.1293 -2.3329 -3.4667 12 6 2.0323 -0.7103 1.2305 13 8 2.4521 -1.8450 1.1467 14 7 2.0152 -0.0845 2.4240 15 6 1.5931 1.3156 2.5110 16 6 0.1274 1.3779 2.8560 17 1 -0.4337 0.4657 2.9960 18 6 -0.4976 2.5993 2.9919 19 7 0.1854 3.7101 2.8209 20 14 -2.3145 2.6764 3.4188 21 1 -2.4753 2.7094 4.8947 22 1 -2.9102 3.9020 2.8285 23 1 -3.0027 1.4792 2.8726 24 6 2.4187 -0.8045 3.6345 25 6 3.2119 -2.1004 3.4543 26 6 1.7520 -2.1540 3.9092 27 1 -0.3634 0.6164 0.8223 28 1 -0.3633 0.4038 -0.9449 29 1 -0.3633 -1.0203 0.1228 30 1 1.2826 1.8310 -1.4207 31 1 1.4323 3.1498 -3.4934 32 1 2.2971 2.1160 -5.5528 33 1 3.0250 -0.2349 -5.5423 34 1 2.1702 1.8217 3.2849 35 1 1.7618 1.8063 1.5524 36 1 -0.2544 4.5694 2.9161 37 1 2.6631 -0.1798 4.4936 38 1 3.4331 -2.4175 2.4352 39 1 3.9784 -2.3284 4.1949 40 1 1.5581 -2.4171 4.9489 41 1 1.0131 -2.5060 3.1892 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071916124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:31 Heat of formation + Delta-G solvation = 2.824068 kcal Electronic energy + Delta-G solvation = -25557.414823 eV Core-core repulsion = 21871.874799 eV Total energy + Delta-G solvation = -3685.540024 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53685 -39.45535 -37.43733 -35.66903 -34.52119 -32.53659 -32.26326 -30.88516 -30.07773 -28.74628 -27.30266 -24.55162 -23.30001 -22.85208 -22.27189 -21.83485 -21.29344 -18.55577 -18.21139 -16.82315 -16.42511 -15.98228 -15.72301 -15.42460 -15.21411 -14.60911 -14.54903 -14.36047 -13.82591 -13.50289 -13.36589 -12.89740 -12.70981 -12.45510 -12.32024 -12.00710 -11.79941 -11.64815 -11.36897 -11.24827 -11.04081 -10.86570 -10.80095 -10.77365 -10.62612 -10.52841 -10.31250 -10.01552 -9.76955 -9.67559 -8.87203 -8.77285 -8.55599 -8.11617 -7.67689 -6.33415 -4.40651 1.08950 1.34289 1.79686 2.90701 3.08336 3.13755 3.22171 3.25875 3.61323 3.95336 4.20672 4.52497 4.74658 4.82121 4.96900 5.00964 5.05922 5.19669 5.28805 5.40004 5.44836 5.50004 5.58171 5.64531 5.70915 6.03052 6.09180 6.14283 6.19540 6.22543 6.23152 6.40626 6.47525 6.61810 6.63847 6.81337 6.88319 6.99982 7.38072 7.52287 7.61109 7.86485 8.13048 8.63883 8.84083 9.26099 10.72494 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.003857 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.639398 B = 7257.405122 C = 9151.603410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.071 3.929 3 H 0.100 0.900 4 O -0.277 6.277 5 C 0.167 3.833 6 C -0.206 4.206 7 C -0.062 4.062 8 C -0.162 4.162 9 C -0.057 4.057 10 C -0.131 4.131 11 Br -0.041 7.041 12 C 0.525 3.475 13 O -0.539 6.539 14 N -0.561 5.561 15 C 0.234 3.766 16 C -0.538 4.538 17 H 0.067 0.933 18 C 0.068 3.932 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.091 3.909 25 C -0.209 4.209 26 C -0.189 4.189 27 H 0.124 0.876 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.145 0.855 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.267 0.733 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -4.408 -12.058 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.012 3.988 3 H 0.118 0.882 4 O -0.189 6.189 5 C 0.118 3.882 6 C -0.225 4.225 7 C -0.080 4.080 8 C -0.181 4.181 9 C -0.076 4.076 10 C -0.211 4.211 11 Br 0.044 6.956 12 C 0.312 3.688 13 O -0.418 6.418 14 N -0.291 5.291 15 C 0.114 3.886 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.721 3.279 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.014 4.014 25 C -0.246 4.246 26 C -0.228 4.228 27 H 0.142 0.858 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.162 0.838 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.882 -5.641 -12.035 14.160 hybrid contribution -1.356 0.971 0.490 1.738 sum 3.527 -4.670 -11.546 12.944 Atomic orbital electron populations 1.22579 0.91732 1.04448 1.05471 1.22399 0.96792 0.96791 0.82797 0.88246 1.86267 1.79699 1.37703 1.15220 1.18729 0.92970 0.90175 0.86336 1.21517 1.06639 0.93376 1.00965 1.21114 0.95335 0.99740 0.91841 1.21014 1.03377 0.94864 0.98862 1.20912 0.97106 0.93859 0.95770 1.21035 1.11921 0.93375 0.94751 1.96682 1.89304 1.10483 1.99119 1.19832 0.78582 0.86231 0.84184 1.90423 1.47247 1.18581 1.85568 1.47506 1.62766 1.14601 1.04187 1.19585 0.95823 0.74484 0.98665 1.21435 0.94174 0.92878 1.49168 0.91520 1.24941 0.98598 0.95384 0.94675 1.69910 1.36579 0.97745 1.48215 0.86545 0.84519 0.77847 0.78971 1.20371 1.20978 1.19561 1.21484 1.03153 0.87503 0.89243 1.24120 0.93793 1.00781 1.05875 1.23119 0.96570 1.01890 1.01232 0.85766 0.91977 0.92032 0.83735 0.85096 0.85287 0.84772 0.94164 0.94353 0.92299 0.85698 0.83816 0.90251 0.89281 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 9.02 37.16 0.34 -2.98 16 2 C 0.07 1.32 1.90 -27.88 -0.05 1.26 16 3 H 0.10 1.80 4.41 -51.92 -0.23 1.57 16 4 O -0.28 -5.14 8.73 -38.75 -0.34 -5.48 16 5 C 0.17 2.70 6.53 -39.20 -0.26 2.44 16 6 C -0.21 -2.96 8.21 -39.43 -0.32 -3.28 16 7 C -0.06 -0.73 10.04 -39.60 -0.40 -1.13 16 8 C -0.16 -1.73 10.04 -39.56 -0.40 -2.13 16 9 C -0.06 -0.67 9.78 -39.58 -0.39 -1.06 16 10 C -0.13 -1.92 6.24 -39.38 -0.25 -2.17 16 11 Br -0.04 -0.60 33.16 -68.01 -2.26 -2.85 16 12 C 0.52 10.80 6.71 -10.99 -0.07 10.72 16 13 O -0.54 -11.92 12.49 -13.73 -0.17 -12.09 16 14 N -0.56 -11.40 2.82 -167.46 -0.47 -11.88 16 15 C 0.23 5.13 4.88 -5.19 -0.03 5.11 16 16 C -0.54 -12.70 6.77 -34.44 -0.23 -12.93 16 17 H 0.07 1.62 7.75 -52.49 -0.41 1.21 16 18 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -22.55 13.29 55.43 0.74 -21.81 16 20 Si 0.89 19.20 29.54 -169.99 -5.02 14.18 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 C 0.09 1.69 6.63 -67.92 -0.45 1.24 16 25 C -0.21 -3.61 9.64 -26.73 -0.26 -3.87 16 26 C -0.19 -3.30 9.91 -26.73 -0.26 -3.57 16 27 H 0.12 2.46 4.93 -51.93 -0.26 2.20 16 28 H 0.06 0.99 7.06 -51.93 -0.37 0.63 16 29 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 30 H 0.15 2.12 5.58 -52.49 -0.29 1.83 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.04 0.94 8.10 -51.93 -0.42 0.51 16 35 H 0.04 0.85 5.86 -51.93 -0.30 0.55 16 36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.13 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.14 2.85 4.94 -53.53 -0.26 2.59 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.09 1.74 7.85 -51.93 -0.41 1.34 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -26.80 354.61 -10.35 -37.15 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.04 Total: 8.23 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -3.13 Total: -10.78 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.26 Total: -33.69 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.51 Total: -17.57 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.26 Total: -2.85 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.80 -10.35 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.971 kcal (2) G-P(sol) polarization free energy of solvation -26.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds