Wall clock time and date at job start Tue Mar 31 2020 05:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.46636 * 2 1 4 4 O 1.42896 * 109.47387 * 240.00083 * 2 1 3 5 5 C 1.35911 * 117.00287 * 83.46148 * 4 2 1 6 6 C 1.38720 * 120.05721 * 358.01023 * 5 4 2 7 7 C 1.38153 * 119.94940 * 179.67673 * 6 5 4 8 8 C 1.38279 * 120.07553 * 0.61917 * 7 6 5 9 9 C 1.38244 * 120.11292 * 359.67826 * 8 7 6 10 10 C 1.38235 * 120.05213 * 0.02562 * 9 8 7 11 11 Br 1.89092 * 120.03896 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47120 * 119.99373 * 2 1 3 13 13 O 1.21283 * 119.99629 * 102.69699 * 12 2 1 14 14 N 1.34770 * 120.00286 * 282.69345 * 12 2 1 15 15 C 1.46498 * 120.00110 * 355.89236 * 14 12 2 16 16 C 1.50701 * 109.46890 * 94.75048 * 15 14 12 17 17 H 1.08001 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00217 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99938 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00255 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47109 * 90.00195 * 20 18 16 22 22 H 1.48500 * 109.47402 * 210.00033 * 20 18 16 23 23 H 1.48502 * 109.47382 * 330.00213 * 20 18 16 24 24 C 1.46506 * 120.00174 * 175.89253 * 14 12 2 25 25 C 1.53008 * 117.49586 * 16.89965 * 24 14 12 26 26 C 1.53002 * 59.99929 * 252.50861 * 25 24 14 27 27 H 1.09005 * 109.47231 * 306.85807 * 1 2 3 28 28 H 1.08993 * 109.47312 * 66.86238 * 1 2 3 29 29 H 1.08998 * 109.46812 * 186.86166 * 1 2 3 30 30 H 1.07994 * 120.02505 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.95743 * 180.29681 * 7 6 5 32 32 H 1.07994 * 119.94180 * 179.70206 * 8 7 6 33 33 H 1.08001 * 119.97221 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47273 * 214.74722 * 15 14 12 35 35 H 1.09000 * 109.47305 * 334.75190 * 15 14 12 36 36 H 0.97001 * 120.00477 * 179.97438 * 19 18 16 37 37 H 1.08993 * 115.55572 * 162.60357 * 24 14 12 38 38 H 1.09001 * 117.49884 * 359.97438 * 25 24 14 39 39 H 1.08999 * 117.49875 * 145.02094 * 25 24 14 40 40 H 1.08996 * 117.50404 * 252.51098 * 26 25 24 41 41 H 1.09005 * 117.49835 * 107.48545 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0821 0.0544 -2.3119 6 6 1.6669 1.3780 -2.3225 7 6 1.7510 2.1179 -3.4862 8 6 2.2367 1.5370 -4.6432 9 6 2.6456 0.2164 -4.6374 10 6 2.5693 -0.5268 -3.4744 11 35 3.1293 -2.3329 -3.4667 12 6 2.0323 -0.7103 1.2305 13 8 2.4521 -1.8450 1.1467 14 7 2.0152 -0.0845 2.4240 15 6 1.5931 1.3156 2.5110 16 6 0.1274 1.3779 2.8560 17 1 -0.4337 0.4657 2.9960 18 6 -0.4976 2.5993 2.9919 19 7 0.1854 3.7101 2.8209 20 14 -2.3145 2.6764 3.4188 21 1 -2.4753 2.7094 4.8947 22 1 -2.9102 3.9020 2.8285 23 1 -3.0027 1.4792 2.8726 24 6 2.4187 -0.8045 3.6345 25 6 3.2119 -2.1004 3.4543 26 6 1.7520 -2.1540 3.9092 27 1 -0.3634 0.6164 0.8223 28 1 -0.3633 0.4038 -0.9449 29 1 -0.3633 -1.0203 0.1228 30 1 1.2826 1.8310 -1.4207 31 1 1.4323 3.1498 -3.4934 32 1 2.2971 2.1160 -5.5528 33 1 3.0250 -0.2349 -5.5423 34 1 2.1702 1.8217 3.2849 35 1 1.7618 1.8063 1.5524 36 1 -0.2544 4.5694 2.9161 37 1 2.6631 -0.1798 4.4936 38 1 3.4331 -2.4175 2.4352 39 1 3.9784 -2.3284 4.1949 40 1 1.5581 -2.4171 4.9489 41 1 1.0131 -2.5060 3.1892 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071916124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:30 Heat of formation + Delta-G solvation = -8.647842 kcal Electronic energy + Delta-G solvation = -25557.912282 eV Core-core repulsion = 21871.874799 eV Total energy + Delta-G solvation = -3686.037484 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91265 -40.81206 -38.61757 -37.22688 -36.16002 -34.23598 -33.46002 -32.25151 -31.14420 -29.83002 -29.11742 -26.01620 -24.95703 -24.23892 -23.37911 -23.21187 -22.57967 -20.06023 -19.44608 -18.61843 -18.04884 -17.18836 -16.93480 -16.80082 -16.61769 -16.30477 -15.92147 -15.51680 -15.19862 -14.88256 -14.50168 -14.37773 -14.20988 -13.97029 -13.80251 -13.51119 -13.26252 -12.95321 -12.78948 -12.70274 -12.66427 -12.38747 -12.22931 -12.07391 -12.02806 -11.84599 -11.82938 -11.43805 -11.19784 -11.12978 -10.61902 -10.18852 -9.86764 -9.31144 -9.23285 -8.20078 -6.32188 0.08511 0.31688 0.71282 1.42568 1.44306 1.47999 1.52789 1.58821 2.38680 2.53610 2.62048 3.07426 3.11353 3.37558 3.65735 3.80781 3.90468 3.98401 3.99724 4.15094 4.20309 4.22626 4.31914 4.46621 4.62269 4.70773 4.74008 4.78032 4.83110 4.89866 5.06425 5.10464 5.16578 5.26188 5.29832 5.39716 5.44200 5.68988 5.70004 5.91258 6.01774 6.18024 6.45314 6.78012 7.20087 7.37841 8.85126 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.003857 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.639398 B = 7257.405122 C = 9151.603410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 H 0.100 0.900 4 O -0.297 6.297 5 C 0.134 3.866 6 C -0.218 4.218 7 C -0.060 4.060 8 C -0.146 4.146 9 C -0.054 4.054 10 C -0.146 4.146 11 Br -0.051 7.051 12 C 0.517 3.483 13 O -0.558 6.558 14 N -0.563 5.563 15 C 0.247 3.753 16 C -0.535 4.535 17 H 0.057 0.943 18 C 0.032 3.968 19 N -0.914 5.914 20 Si 0.947 3.053 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.270 1.270 24 C 0.067 3.933 25 C -0.196 4.196 26 C -0.182 4.182 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.134 0.866 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.027 0.973 35 H 0.034 0.966 36 H 0.269 0.731 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -3.707 -13.217 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.021 3.979 3 H 0.117 0.883 4 O -0.210 6.210 5 C 0.086 3.914 6 C -0.237 4.237 7 C -0.078 4.078 8 C -0.164 4.164 9 C -0.073 4.073 10 C -0.226 4.226 11 Br 0.034 6.966 12 C 0.305 3.695 13 O -0.439 6.439 14 N -0.292 5.292 15 C 0.127 3.873 16 C -0.573 4.573 17 H 0.075 0.925 18 C -0.170 4.170 19 N -0.552 5.552 20 Si 0.773 3.227 21 H -0.204 1.204 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.037 4.037 25 C -0.233 4.233 26 C -0.221 4.221 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.175 0.825 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.643 -4.945 -13.199 14.840 hybrid contribution -1.227 0.765 0.746 1.627 sum 3.416 -4.180 -12.453 13.573 Atomic orbital electron populations 1.22418 0.91498 1.03553 1.05542 1.22199 0.96793 0.96393 0.82561 0.88263 1.86218 1.80509 1.38500 1.15787 1.19022 0.95280 0.91111 0.85996 1.21555 1.07299 0.93027 1.01835 1.21488 0.94417 1.00763 0.91148 1.21485 1.00767 0.94397 0.99767 1.21312 0.96228 0.94258 0.95549 1.21302 1.12598 0.93343 0.95362 1.96657 1.89389 1.11421 1.99130 1.20226 0.78275 0.86200 0.84816 1.90428 1.48109 1.19376 1.86002 1.47498 1.62617 1.14106 1.04961 1.19308 0.94920 0.75296 0.97809 1.21487 0.94770 0.92476 1.48608 0.92451 1.25496 1.01645 0.95119 0.94692 1.69985 1.37865 0.98117 1.49282 0.85722 0.80786 0.77760 0.78477 1.20428 1.20666 1.19427 1.21809 1.04570 0.88190 0.89118 1.24007 0.94520 0.99376 1.05396 1.23129 0.96092 1.00664 1.02199 0.87572 0.90276 0.92790 0.84795 0.82453 0.81318 0.82162 0.95509 0.94796 0.92207 0.84409 0.86277 0.87174 0.86435 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.35 9.02 71.98 0.65 -5.70 16 2 C 0.08 3.05 1.90 29.85 0.06 3.11 16 3 H 0.10 3.74 4.41 -2.38 -0.01 3.73 16 4 O -0.30 -11.35 8.73 -74.11 -0.65 -12.00 16 5 C 0.13 4.33 6.53 22.52 0.15 4.48 16 6 C -0.22 -6.14 8.21 22.36 0.18 -5.96 16 7 C -0.06 -1.26 10.04 22.26 0.22 -1.03 16 8 C -0.15 -2.56 10.04 22.28 0.22 -2.33 16 9 C -0.05 -1.13 9.78 22.27 0.22 -0.91 16 10 C -0.15 -4.18 6.24 22.40 0.14 -4.04 16 11 Br -0.05 -1.48 33.16 -20.37 -0.68 -2.16 16 12 C 0.52 21.95 6.71 87.66 0.59 22.54 16 13 O -0.56 -25.53 12.49 15.40 0.19 -25.34 16 14 N -0.56 -23.37 2.82 -802.13 -2.27 -25.63 16 15 C 0.25 11.06 4.88 85.63 0.42 11.48 16 16 C -0.54 -25.48 6.77 25.60 0.17 -25.30 16 17 H 0.06 2.81 7.75 -2.91 -0.02 2.79 16 18 C 0.03 1.54 5.46 84.65 0.46 2.01 16 19 N -0.91 -46.53 13.29 21.45 0.28 -46.25 16 20 Si 0.95 39.13 29.54 68.60 2.03 41.16 16 21 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 C 0.07 2.49 6.63 44.99 0.30 2.78 16 25 C -0.20 -6.66 9.64 30.60 0.29 -6.37 16 26 C -0.18 -6.25 9.91 30.60 0.30 -5.95 16 27 H 0.11 4.30 4.93 -2.38 -0.01 4.29 16 28 H 0.08 2.57 7.06 -2.39 -0.02 2.55 16 29 H 0.05 2.01 8.13 -2.39 -0.02 2.00 16 30 H 0.13 3.99 5.58 -2.91 -0.02 3.97 16 31 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.03 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.03 1.56 5.86 -2.39 -0.01 1.54 16 36 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 37 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 38 H 0.12 4.79 4.94 -27.68 -0.14 4.66 16 39 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.07 2.64 7.85 -2.38 -0.02 2.62 16 Total: -1.00 -58.32 354.61 4.23 -54.09 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.94 Total: 27.34 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 4.38 Total: -11.21 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.98 Total: -71.88 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.45 Total: -37.34 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Atomic # 35 Polarization: -1.48 SS G_CDS: -0.68 Total: -2.16 kcal Total: -58.32 4.23 -54.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.440 kcal (2) G-P(sol) polarization free energy of solvation -58.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds