Wall clock time and date at job start Tue Mar 31 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47041 * 2 1 4 4 O 1.42899 * 109.47286 * 119.99786 * 2 1 3 5 5 C 1.35920 * 117.00500 * 276.11042 * 4 2 1 6 6 C 1.38719 * 120.05174 * 355.69087 * 5 4 2 7 7 C 1.38145 * 119.95126 * 179.97438 * 6 5 4 8 8 C 1.38284 * 120.07285 * 359.73355 * 7 6 5 9 9 C 1.38251 * 120.11396 * 0.54372 * 8 7 6 10 10 C 1.38234 * 120.04234 * 359.45228 * 9 8 7 11 11 Br 1.89111 * 120.03106 * 180.29752 * 10 9 8 12 12 C 1.50698 * 109.47116 * 239.99987 * 2 1 3 13 13 O 1.21280 * 119.99991 * 247.46209 * 12 2 1 14 14 N 1.34780 * 119.99893 * 67.45977 * 12 2 1 15 15 C 1.46497 * 119.99774 * 5.59821 * 14 12 2 16 16 C 1.50702 * 109.46750 * 94.67627 * 15 14 12 17 17 H 1.07992 * 120.00516 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99375 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99571 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00511 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47369 * 90.00169 * 20 18 16 22 22 H 1.48502 * 109.47301 * 210.00241 * 20 18 16 23 23 H 1.48508 * 109.47063 * 330.00281 * 20 18 16 24 24 C 1.46499 * 119.99818 * 185.59964 * 14 12 2 25 25 C 1.53002 * 117.49891 * 16.88026 * 24 14 12 26 26 C 1.53004 * 60.00217 * 252.51134 * 25 24 14 27 27 H 1.08994 * 109.47372 * 185.92327 * 1 2 3 28 28 H 1.09004 * 109.47007 * 305.92304 * 1 2 3 29 29 H 1.08997 * 109.47272 * 65.92004 * 1 2 3 30 30 H 1.08001 * 120.02837 * 359.96008 * 6 5 4 31 31 H 1.08001 * 119.96436 * 179.97438 * 7 6 5 32 32 H 1.07995 * 119.94533 * 180.29884 * 8 7 6 33 33 H 1.08000 * 119.97133 * 179.73328 * 9 8 7 34 34 H 1.09006 * 109.46829 * 214.66782 * 15 14 12 35 35 H 1.08998 * 109.47750 * 334.66827 * 15 14 12 36 36 H 0.96998 * 119.99869 * 179.97438 * 19 18 16 37 37 H 1.08996 * 115.55136 * 162.58693 * 24 14 12 38 38 H 1.09004 * 117.50203 * 0.02562 * 25 24 14 39 39 H 1.09000 * 117.50075 * 145.02260 * 25 24 14 40 40 H 1.08998 * 117.49536 * 252.51384 * 26 25 24 41 41 H 1.08995 * 117.51490 * 107.47839 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0906 0.0568 2.3099 6 6 1.8080 1.4148 2.2891 7 6 1.8937 2.1551 3.4523 8 6 2.2555 1.5428 4.6382 9 6 2.5433 0.1908 4.6612 10 6 2.4590 -0.5546 3.5001 11 35 2.8445 -2.4057 3.5336 12 6 2.0323 -0.7104 -1.2304 13 8 2.6140 -1.7693 -1.1243 14 7 1.8351 -0.1690 -2.4489 15 6 1.2430 1.1655 -2.5703 16 6 2.3396 2.1934 -2.6798 17 1 3.3740 1.8837 -2.6604 18 6 2.0221 3.5293 -2.8047 19 7 2.9791 4.4265 -2.8997 20 14 0.2330 4.0650 -2.8389 21 1 -0.2279 4.3405 -1.4543 22 1 0.1004 5.2960 -3.6588 23 1 -0.5961 2.9843 -3.4307 24 6 2.2128 -0.9151 -3.6518 25 6 2.4481 -2.4198 -3.5050 26 6 3.6344 -1.4771 -3.7172 27 1 -0.3634 -1.0221 0.1060 28 1 -0.3633 0.6030 0.8322 29 1 -0.3634 0.4193 -0.9382 30 1 1.5214 1.8930 1.3641 31 1 1.6742 3.2124 3.4362 32 1 2.3172 2.1225 5.5473 33 1 2.8298 -0.2842 5.5879 34 1 0.6172 1.2055 -3.4619 35 1 0.6352 1.3749 -1.6901 36 1 2.7558 5.3663 -2.9880 37 1 1.7673 -0.5635 -4.5823 38 1 2.3214 -2.8547 -2.5136 39 1 2.1573 -3.0584 -4.3391 40 1 4.1239 -1.4955 -4.6909 41 1 4.2886 -1.2914 -2.8654 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071916125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:33 Heat of formation + Delta-G solvation = 9.949671 kcal Electronic energy + Delta-G solvation = -25593.665122 eV Core-core repulsion = 21908.434088 eV Total energy + Delta-G solvation = -3685.231035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62588 -39.52585 -37.49760 -35.73333 -34.62921 -32.61392 -32.29291 -31.07132 -30.11374 -28.79653 -27.90627 -24.85956 -23.21529 -22.45140 -22.30698 -21.86370 -21.36598 -18.68009 -18.28913 -17.12919 -16.57379 -16.02257 -15.75968 -15.55464 -15.34137 -14.69620 -14.54763 -14.25701 -14.08365 -13.48644 -13.43108 -12.98498 -12.82807 -12.74963 -12.48073 -12.37114 -11.91340 -11.80398 -11.59279 -11.42218 -11.12265 -10.96522 -10.80449 -10.78929 -10.69513 -10.51226 -10.12869 -10.04401 -9.86242 -9.63571 -8.92332 -8.85609 -8.78648 -8.16243 -7.67927 -6.31898 -4.34866 1.07302 1.31612 1.76913 2.79573 3.02070 3.05569 3.13944 3.17466 3.58850 3.82132 4.14624 4.43996 4.71491 4.73365 4.91885 4.97237 4.99306 5.10720 5.17954 5.23290 5.38494 5.45481 5.53533 5.58490 5.67672 5.70726 5.73569 6.02253 6.08180 6.10320 6.17458 6.18682 6.34160 6.38807 6.43924 6.56186 6.61574 6.81340 7.24118 7.30509 7.38747 7.91599 8.28168 8.67717 8.78038 9.25487 10.80560 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.004147 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.283223 B = 6750.565322 C = 8724.104731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.062 3.938 3 H 0.114 0.886 4 O -0.272 6.272 5 C 0.165 3.835 6 C -0.204 4.204 7 C -0.061 4.061 8 C -0.160 4.160 9 C -0.056 4.056 10 C -0.129 4.129 11 Br -0.041 7.041 12 C 0.526 3.474 13 O -0.532 6.532 14 N -0.558 5.558 15 C 0.198 3.802 16 C -0.545 4.545 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.886 5.886 20 Si 0.865 3.135 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.263 1.263 24 C 0.090 3.910 25 C -0.202 4.202 26 C -0.183 4.183 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.268 0.732 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.077 -7.812 12.316 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.002 3.998 3 H 0.132 0.868 4 O -0.183 6.183 5 C 0.116 3.884 6 C -0.224 4.224 7 C -0.079 4.079 8 C -0.179 4.179 9 C -0.076 4.076 10 C -0.209 4.209 11 Br 0.044 6.956 12 C 0.313 3.687 13 O -0.410 6.410 14 N -0.287 5.287 15 C 0.077 3.923 16 C -0.583 4.583 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.523 5.523 20 Si 0.691 3.309 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.187 1.187 24 C -0.015 4.015 25 C -0.239 4.239 26 C -0.222 4.222 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.563 -9.042 12.301 15.934 hybrid contribution -0.906 1.417 -0.287 1.706 sum -5.469 -7.625 12.015 15.245 Atomic orbital electron populations 1.22464 0.92982 1.03900 1.04372 1.22351 0.95504 0.98420 0.83485 0.86841 1.86280 1.79685 1.37161 1.15178 1.18707 0.93443 0.90105 0.86114 1.21474 1.07524 0.92604 1.00775 1.21114 0.95086 1.00007 0.91739 1.21030 1.04000 0.94287 0.98599 1.20921 0.96831 0.93870 0.96004 1.21017 1.13549 0.92259 0.94044 1.96684 1.93866 1.05951 1.99054 1.19738 0.79794 0.85235 0.83910 1.90524 1.41858 1.22764 1.85888 1.47161 1.60450 1.17930 1.03182 1.20133 0.95004 0.79060 0.98056 1.21368 0.94369 0.90218 1.52376 0.90127 1.24874 0.97099 0.96384 0.94236 1.69888 1.32166 1.01788 1.48445 0.87018 0.85627 0.79240 0.78985 1.19679 1.20622 1.18715 1.21495 0.99128 0.91981 0.88860 1.23805 1.02612 0.92446 1.05035 1.23126 0.92096 1.04452 1.02535 0.90915 0.91062 0.89130 0.83842 0.85049 0.85214 0.84700 0.94446 0.94333 0.92216 0.85581 0.84955 0.89919 0.89203 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.86 37.16 0.33 -2.29 16 2 C 0.06 1.09 1.82 -27.88 -0.05 1.04 16 3 H 0.11 2.09 5.38 -51.93 -0.28 1.81 16 4 O -0.27 -4.91 8.68 -39.29 -0.34 -5.25 16 5 C 0.17 2.65 6.56 -39.20 -0.26 2.39 16 6 C -0.20 -2.97 8.45 -39.44 -0.33 -3.30 16 7 C -0.06 -0.73 10.04 -39.60 -0.40 -1.13 16 8 C -0.16 -1.73 10.04 -39.56 -0.40 -2.13 16 9 C -0.06 -0.67 9.78 -39.58 -0.39 -1.05 16 10 C -0.13 -1.88 6.24 -39.38 -0.25 -2.12 16 11 Br -0.04 -0.59 33.16 -68.01 -2.26 -2.84 16 12 C 0.53 10.57 6.83 -10.98 -0.08 10.49 16 13 O -0.53 -11.62 12.25 -14.24 -0.17 -11.79 16 14 N -0.56 -11.06 2.82 -167.47 -0.47 -11.53 16 15 C 0.20 4.10 3.63 -5.19 -0.02 4.08 16 16 C -0.55 -13.77 9.94 -34.44 -0.34 -14.11 16 17 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 18 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.89 -24.86 13.96 55.43 0.77 -24.09 16 20 Si 0.87 18.52 27.47 -169.99 -4.67 13.85 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 23 H -0.26 -5.27 6.54 56.52 0.37 -4.90 16 24 C 0.09 1.64 6.63 -67.93 -0.45 1.19 16 25 C -0.20 -3.38 9.63 -26.73 -0.26 -3.63 16 26 C -0.18 -3.27 9.87 -26.73 -0.26 -3.54 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.91 7.47 -51.93 -0.39 0.52 16 29 H 0.09 1.30 5.58 -51.93 -0.29 1.01 16 30 H 0.14 2.11 5.69 -52.49 -0.30 1.81 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.04 0.76 7.16 -51.93 -0.37 0.39 16 35 H 0.04 0.74 3.62 -51.93 -0.19 0.55 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.13 2.08 8.14 -51.93 -0.42 1.66 16 38 H 0.13 2.52 5.24 -52.06 -0.27 2.24 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.09 1.94 7.57 -51.93 -0.39 1.54 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -29.48 353.71 -10.08 -39.56 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.03 Total: 8.95 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.24 Total: -12.20 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.30 Total: -35.62 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.52 Total: -17.04 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.67 Total: 13.85 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.26 Total: -2.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.48 -10.08 -39.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.513 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds