Wall clock time and date at job start Tue Mar 31 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47351 * 2 1 4 4 S 1.81400 * 109.46957 * 120.00255 * 2 1 3 5 5 O 1.42106 * 110.54274 * 311.90707 * 4 2 1 6 6 O 1.42101 * 110.54609 * 175.15669 * 4 2 1 7 7 C 1.76204 * 104.45239 * 63.53130 * 4 2 1 8 8 C 1.38127 * 120.03779 * 244.35795 * 7 4 2 9 9 C 1.38257 * 120.07193 * 179.72445 * 8 7 4 10 10 C 1.38300 * 120.14134 * 0.28134 * 9 8 7 11 11 C 1.38094 * 120.06780 * 359.97438 * 10 9 8 12 12 C 1.38844 * 120.03273 * 64.63430 * 7 4 2 13 13 N 1.39950 * 120.07280 * 359.97438 * 12 7 4 14 14 C 1.34773 * 120.00176 * 204.16056 * 13 12 7 15 15 O 1.21591 * 119.99929 * 5.52984 * 14 13 12 16 16 N 1.34771 * 120.00148 * 185.53243 * 14 13 12 17 17 C 1.46503 * 120.00006 * 6.06803 * 16 14 13 18 18 C 1.50700 * 109.46917 * 90.00085 * 17 16 14 19 19 H 1.07993 * 120.00246 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99530 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00242 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99806 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47109 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46886 * 120.00300 * 22 20 18 25 25 H 1.48496 * 109.47046 * 239.99709 * 22 20 18 26 26 C 1.46499 * 120.00178 * 186.07076 * 16 14 13 27 27 C 1.52999 * 117.49932 * 16.23059 * 26 16 14 28 28 C 1.52999 * 117.49674 * 307.60846 * 26 16 14 29 29 H 1.09004 * 109.46695 * 295.03074 * 1 2 3 30 30 H 1.08999 * 109.46787 * 55.02379 * 1 2 3 31 31 H 1.09002 * 109.47304 * 175.02718 * 1 2 3 32 32 H 1.09001 * 109.46847 * 239.99558 * 2 1 3 33 33 H 1.08999 * 109.47154 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47094 * 300.00008 * 3 2 1 35 35 H 1.09004 * 109.47051 * 59.99720 * 3 2 1 36 36 H 1.08008 * 119.96237 * 0.02562 * 8 7 4 37 37 H 1.07998 * 119.93059 * 180.25044 * 9 8 7 38 38 H 1.08003 * 119.96904 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.03773 * 180.02562 * 11 10 9 40 40 H 0.96996 * 119.99508 * 24.16737 * 13 12 7 41 41 H 1.09005 * 109.46971 * 210.00340 * 17 16 14 42 42 H 1.09000 * 109.46798 * 329.99978 * 17 16 14 43 43 H 0.96998 * 119.99597 * 180.02562 * 21 20 18 44 44 H 1.09001 * 115.55434 * 161.93746 * 26 16 14 45 45 H 1.09000 * 117.49914 * 0.02562 * 27 26 16 46 46 H 1.08996 * 117.50022 * 145.02237 * 27 26 16 47 47 H 1.09005 * 117.49652 * 214.98005 * 28 26 16 48 48 H 1.08999 * 117.50295 * 359.97426 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1347 -0.8552 1.4811 5 8 1.4629 -0.3808 2.6400 6 8 3.5509 -0.9666 1.4494 7 6 1.5642 -2.5120 1.2959 8 6 0.6518 -3.0334 2.1923 9 6 0.1995 -4.3315 2.0444 10 6 0.6629 -5.1139 1.0024 11 6 1.5791 -4.6003 0.1059 12 6 2.0357 -3.2967 0.2520 13 7 2.9642 -2.7732 -0.6549 14 6 3.0626 -3.2934 -1.8943 15 8 2.2787 -4.1484 -2.2588 16 7 4.0299 -2.8659 -2.7297 17 6 5.0544 -1.9354 -2.2490 18 6 6.2222 -2.7138 -1.7002 19 1 6.2031 -3.7935 -1.7082 20 6 7.3147 -2.0473 -1.1869 21 7 7.3373 -0.7324 -1.1758 22 14 8.7621 -3.0122 -0.5060 23 1 8.4913 -4.4666 -0.6333 24 1 9.9888 -2.6688 -1.2692 25 1 8.9571 -2.6678 0.9253 26 6 4.0571 -3.3316 -4.1184 27 6 2.7861 -3.9797 -4.6711 28 6 4.0105 -4.8420 -4.3580 29 1 -0.3633 0.4348 0.9312 30 1 -0.3633 0.5891 -0.8421 31 1 -0.3634 -1.0238 -0.0891 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.2878 -2.4248 3.0070 37 1 -0.5170 -4.7355 2.7443 38 1 0.3080 -6.1277 0.8897 39 1 1.9404 -5.2115 -0.7079 40 1 3.5368 -2.0360 -0.3914 41 1 5.3914 -1.3081 -3.0744 42 1 4.6347 -1.3074 -1.4632 43 1 8.1060 -0.2637 -0.8150 44 1 4.6554 -2.7316 -4.8040 45 1 1.9296 -4.0591 -4.0017 46 1 2.5480 -3.8059 -5.7205 47 1 4.5779 -5.2356 -5.2014 48 1 3.9601 -5.4892 -3.4824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071920270.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:48 Heat of formation + Delta-G solvation = -20.931700 kcal Electronic energy + Delta-G solvation = -33266.541178 eV Core-core repulsion = 29029.994175 eV Total energy + Delta-G solvation = -4236.547003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75123 -38.88336 -37.15512 -36.33800 -35.84450 -35.23227 -34.78010 -33.63132 -32.23687 -31.16012 -29.25695 -27.47180 -27.15437 -23.75787 -23.53006 -22.89942 -22.30653 -21.89479 -21.68628 -19.63675 -18.93421 -17.87744 -17.20462 -17.02029 -16.56551 -16.49221 -15.72847 -15.58901 -15.08612 -14.88384 -14.76138 -14.47578 -14.38597 -14.24030 -13.73001 -13.39853 -13.28425 -13.18836 -12.95846 -12.51543 -12.50078 -12.44270 -12.28370 -11.94988 -11.82538 -11.79493 -11.56587 -11.53039 -11.46016 -11.22807 -11.01936 -10.85149 -10.71720 -10.65641 -10.36090 -10.27407 -10.22065 -9.80826 -9.63937 -9.28521 -9.09953 -8.57665 -8.09457 -7.62240 -6.19959 -4.27367 0.10271 0.95459 1.45534 2.83384 2.97653 3.24555 3.31422 3.33886 3.37787 3.64530 3.91386 4.13573 4.17624 4.37029 4.44538 4.49663 4.61185 4.93091 4.99433 5.01699 5.14748 5.26702 5.33223 5.33790 5.43814 5.46012 5.49608 5.55113 5.56443 5.61508 5.67924 5.87537 5.88569 5.94557 6.07806 6.12320 6.17685 6.24649 6.40719 6.49673 6.61030 6.62249 6.82461 6.96690 7.07251 7.13314 7.51548 7.74670 7.96276 8.25159 8.75845 8.90019 9.41297 10.87356 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.004855 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.607203 B = 5766.394928 C = 6953.797840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.572 4.572 3 C -0.146 4.146 4 S 2.485 3.515 5 O -0.939 6.939 6 O -0.921 6.921 7 C -0.701 4.701 8 C -0.003 4.003 9 C -0.173 4.173 10 C -0.047 4.047 11 C -0.155 4.155 12 C 0.282 3.718 13 N -0.692 5.692 14 C 0.709 3.291 15 O -0.585 6.585 16 N -0.576 5.576 17 C 0.237 3.763 18 C -0.542 4.542 19 H 0.063 0.937 20 C 0.069 3.931 21 N -0.886 5.886 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.280 1.280 26 C 0.102 3.898 27 C -0.203 4.203 28 C -0.186 4.186 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.160 0.840 40 H 0.424 0.576 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.266 0.734 44 H 0.128 0.872 45 H 0.136 0.864 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 -0.132 0.761 14.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.683 4.683 3 C -0.204 4.204 4 S 2.665 3.335 5 O -0.936 6.936 6 O -0.917 6.917 7 C -0.793 4.793 8 C -0.023 4.023 9 C -0.193 4.193 10 C -0.066 4.066 11 C -0.176 4.176 12 C 0.181 3.819 13 N -0.343 5.343 14 C 0.412 3.588 15 O -0.466 6.466 16 N -0.306 5.306 17 C 0.117 3.883 18 C -0.580 4.580 19 H 0.082 0.918 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.206 1.206 26 C -0.004 4.004 27 C -0.240 4.240 28 C -0.225 4.225 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.178 0.822 40 H 0.268 0.732 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.146 0.854 45 H 0.153 0.847 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.498 -0.154 1.128 14.543 hybrid contribution 1.026 -0.613 -0.127 1.201 sum -13.473 -0.767 1.001 13.531 Atomic orbital electron populations 1.21623 0.89558 1.03965 1.04441 1.30038 1.07527 1.09801 1.20894 1.21694 1.02914 0.91191 1.04598 1.05961 0.75461 0.75046 0.77022 1.93502 1.76218 1.80123 1.43801 1.93668 1.26366 1.85403 1.86271 1.29928 1.16742 1.23972 1.08622 1.20662 0.90901 0.95543 0.95146 1.21127 1.03325 0.94809 1.00083 1.21344 0.93633 0.99252 0.92346 1.21690 1.00089 0.94059 1.01791 1.17088 0.86605 0.91976 0.86222 1.43734 1.39000 1.39135 1.12423 1.15812 0.81746 0.81348 0.79848 1.90639 1.46097 1.34796 1.75100 1.46960 1.26816 1.47964 1.08862 1.19521 0.85311 0.87851 0.95577 1.21415 1.01499 0.93687 1.41394 0.91835 1.24913 0.98505 0.94934 0.95138 1.69897 1.30808 1.06610 1.45037 0.86432 0.81865 0.80232 0.78933 1.19680 1.20792 1.20600 1.21409 1.01695 0.94522 0.82774 1.23868 0.95272 1.03843 1.01022 1.23149 1.01613 0.94719 1.02994 0.90498 0.90229 0.90999 0.84587 0.90024 0.89567 0.90979 0.83900 0.85435 0.85329 0.82245 0.73170 0.93717 0.95037 0.92406 0.85393 0.84683 0.90041 0.89340 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.99 37.16 0.33 -1.09 16 2 C -0.57 -7.36 3.30 -26.73 -0.09 -7.45 16 3 C -0.15 -1.67 9.20 37.15 0.34 -1.33 16 4 S 2.48 39.99 4.06 -107.50 -0.44 39.55 16 5 O -0.94 -15.50 16.37 -57.54 -0.94 -16.45 16 6 O -0.92 -18.76 15.95 -57.54 -0.92 -19.68 16 7 C -0.70 -11.17 5.09 -39.40 -0.20 -11.37 16 8 C 0.00 -0.04 9.50 -39.62 -0.38 -0.42 16 9 C -0.17 -2.09 10.04 -39.55 -0.40 -2.48 16 10 C -0.05 -0.60 10.04 -39.61 -0.40 -1.00 16 11 C -0.16 -2.53 8.73 -39.39 -0.34 -2.87 16 12 C 0.28 4.97 6.39 -83.68 -0.53 4.43 16 13 N -0.69 -13.43 4.08 -14.22 -0.06 -13.49 16 14 C 0.71 14.26 7.89 -86.93 -0.69 13.57 16 15 O -0.58 -11.52 9.19 5.29 0.05 -11.47 16 16 N -0.58 -11.79 2.82 -173.17 -0.49 -12.28 16 17 C 0.24 5.55 5.15 -5.19 -0.03 5.52 16 18 C -0.54 -14.31 9.39 -34.44 -0.32 -14.63 16 19 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 20 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 21 N -0.89 -24.57 13.29 55.43 0.74 -23.84 16 22 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.10 1.81 6.62 -67.93 -0.45 1.36 16 27 C -0.20 -3.21 9.63 -26.73 -0.26 -3.46 16 28 C -0.19 -3.10 9.87 -26.73 -0.26 -3.37 16 29 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.72 7.81 -51.93 -0.41 0.32 16 32 H 0.14 1.82 7.00 -51.92 -0.36 1.46 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.14 1.69 7.21 -52.48 -0.38 1.32 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 39 H 0.16 2.79 5.72 -52.49 -0.30 2.49 16 40 H 0.42 8.68 3.54 -40.82 -0.14 8.54 16 41 H 0.04 1.06 8.03 -51.93 -0.42 0.65 16 42 H 0.03 0.76 6.09 -51.93 -0.32 0.45 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.13 2.09 8.09 -51.93 -0.42 1.67 16 45 H 0.14 2.39 5.21 -52.14 -0.27 2.12 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.09 1.76 7.60 -51.93 -0.39 1.37 16 LS Contribution 397.15 15.07 5.99 5.99 Total: -1.00 -31.77 397.15 -11.61 -43.38 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -6.75 Total: 14.84 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -3.77 Total: -22.84 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.19 Total: -49.60 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -1.81 Total: -47.60 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 39.99 SS G_CDS: -0.44 Total: 39.55 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.77 -11.61 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071920270.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.449 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds