Wall clock time and date at job start Tue Mar 31 2020 05:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47351 * 2 1 4 4 S 1.81400 * 109.46957 * 120.00255 * 2 1 3 5 5 O 1.42106 * 110.54274 * 311.90707 * 4 2 1 6 6 O 1.42101 * 110.54609 * 175.15669 * 4 2 1 7 7 C 1.76204 * 104.45239 * 63.53130 * 4 2 1 8 8 C 1.38127 * 120.03779 * 244.35795 * 7 4 2 9 9 C 1.38257 * 120.07193 * 179.72445 * 8 7 4 10 10 C 1.38300 * 120.14134 * 0.28134 * 9 8 7 11 11 C 1.38094 * 120.06780 * 359.97438 * 10 9 8 12 12 C 1.38844 * 120.03273 * 64.63430 * 7 4 2 13 13 N 1.39950 * 120.07280 * 359.97438 * 12 7 4 14 14 C 1.34773 * 120.00176 * 204.16056 * 13 12 7 15 15 O 1.21591 * 119.99929 * 5.52984 * 14 13 12 16 16 N 1.34771 * 120.00148 * 185.53243 * 14 13 12 17 17 C 1.46503 * 120.00006 * 6.06803 * 16 14 13 18 18 C 1.50700 * 109.46917 * 90.00085 * 17 16 14 19 19 H 1.07993 * 120.00246 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99530 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00242 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99806 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47109 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46886 * 120.00300 * 22 20 18 25 25 H 1.48496 * 109.47046 * 239.99709 * 22 20 18 26 26 C 1.46499 * 120.00178 * 186.07076 * 16 14 13 27 27 C 1.52999 * 117.49932 * 16.23059 * 26 16 14 28 28 C 1.52999 * 117.49674 * 307.60846 * 26 16 14 29 29 H 1.09004 * 109.46695 * 295.03074 * 1 2 3 30 30 H 1.08999 * 109.46787 * 55.02379 * 1 2 3 31 31 H 1.09002 * 109.47304 * 175.02718 * 1 2 3 32 32 H 1.09001 * 109.46847 * 239.99558 * 2 1 3 33 33 H 1.08999 * 109.47154 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47094 * 300.00008 * 3 2 1 35 35 H 1.09004 * 109.47051 * 59.99720 * 3 2 1 36 36 H 1.08008 * 119.96237 * 0.02562 * 8 7 4 37 37 H 1.07998 * 119.93059 * 180.25044 * 9 8 7 38 38 H 1.08003 * 119.96904 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.03773 * 180.02562 * 11 10 9 40 40 H 0.96996 * 119.99508 * 24.16737 * 13 12 7 41 41 H 1.09005 * 109.46971 * 210.00340 * 17 16 14 42 42 H 1.09000 * 109.46798 * 329.99978 * 17 16 14 43 43 H 0.96998 * 119.99597 * 180.02562 * 21 20 18 44 44 H 1.09001 * 115.55434 * 161.93746 * 26 16 14 45 45 H 1.09000 * 117.49914 * 0.02562 * 27 26 16 46 46 H 1.08996 * 117.50022 * 145.02237 * 27 26 16 47 47 H 1.09005 * 117.49652 * 214.98005 * 28 26 16 48 48 H 1.08999 * 117.50295 * 359.97426 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1347 -0.8552 1.4811 5 8 1.4629 -0.3808 2.6400 6 8 3.5509 -0.9666 1.4494 7 6 1.5642 -2.5120 1.2959 8 6 0.6518 -3.0334 2.1923 9 6 0.1995 -4.3315 2.0444 10 6 0.6629 -5.1139 1.0024 11 6 1.5791 -4.6003 0.1059 12 6 2.0357 -3.2967 0.2520 13 7 2.9642 -2.7732 -0.6549 14 6 3.0626 -3.2934 -1.8943 15 8 2.2787 -4.1484 -2.2588 16 7 4.0299 -2.8659 -2.7297 17 6 5.0544 -1.9354 -2.2490 18 6 6.2222 -2.7138 -1.7002 19 1 6.2031 -3.7935 -1.7082 20 6 7.3147 -2.0473 -1.1869 21 7 7.3373 -0.7324 -1.1758 22 14 8.7621 -3.0122 -0.5060 23 1 8.4913 -4.4666 -0.6333 24 1 9.9888 -2.6688 -1.2692 25 1 8.9571 -2.6678 0.9253 26 6 4.0571 -3.3316 -4.1184 27 6 2.7861 -3.9797 -4.6711 28 6 4.0105 -4.8420 -4.3580 29 1 -0.3633 0.4348 0.9312 30 1 -0.3633 0.5891 -0.8421 31 1 -0.3634 -1.0238 -0.0891 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.2878 -2.4248 3.0070 37 1 -0.5170 -4.7355 2.7443 38 1 0.3080 -6.1277 0.8897 39 1 1.9404 -5.2115 -0.7079 40 1 3.5368 -2.0360 -0.3914 41 1 5.3914 -1.3081 -3.0744 42 1 4.6347 -1.3074 -1.4632 43 1 8.1060 -0.2637 -0.8150 44 1 4.6554 -2.7316 -4.8040 45 1 1.9296 -4.0591 -4.0017 46 1 2.5480 -3.8059 -5.7205 47 1 4.5779 -5.2356 -5.2014 48 1 3.9601 -5.4892 -3.4824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071920270.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:46 Heat of formation + Delta-G solvation = -39.768256 kcal Electronic energy + Delta-G solvation = -33267.357992 eV Core-core repulsion = 29029.994175 eV Total energy + Delta-G solvation = -4237.363817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.145 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.18269 -40.13989 -38.47564 -37.70183 -37.17702 -36.57556 -36.04529 -35.18506 -34.05719 -32.30150 -30.52729 -29.05658 -28.34232 -25.25068 -24.71316 -24.61812 -23.35631 -23.19477 -22.98742 -21.05986 -20.20144 -19.13904 -18.83347 -18.48117 -18.23694 -17.72938 -17.04094 -16.97712 -16.57909 -16.40393 -16.08706 -15.85555 -15.58258 -15.49577 -14.96663 -14.71004 -14.54226 -14.33448 -14.26849 -14.05442 -13.92564 -13.66744 -13.44446 -13.34933 -13.23881 -13.11041 -13.04170 -12.81497 -12.66275 -12.48190 -12.46897 -12.33547 -12.28665 -12.21357 -11.92599 -11.64429 -11.49586 -11.34413 -11.19468 -10.72014 -10.57155 -10.32482 -9.47336 -9.10286 -8.25489 -6.39791 -1.09152 -0.20907 0.29444 1.33956 1.36970 1.43002 1.48907 1.73075 1.89914 2.34539 2.42729 2.65658 2.75209 3.01095 3.05508 3.13606 3.43736 3.52936 3.80989 3.93104 4.03058 4.03360 4.12959 4.24308 4.27646 4.35304 4.41590 4.52563 4.56050 4.65262 4.65744 4.77368 4.78512 4.83618 4.87536 4.92276 5.00996 5.03147 5.11573 5.16126 5.18646 5.33315 5.41580 5.48566 5.60809 5.68529 5.92813 5.95056 5.95840 6.54376 6.78692 7.28790 7.36872 8.79834 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.004855 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.607203 B = 5766.394928 C = 6953.797840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.552 4.552 3 C -0.155 4.155 4 S 2.474 3.526 5 O -0.950 6.950 6 O -0.978 6.978 7 C -0.705 4.705 8 C -0.010 4.010 9 C -0.156 4.156 10 C -0.038 4.038 11 C -0.175 4.175 12 C 0.249 3.751 13 N -0.699 5.699 14 C 0.704 3.296 15 O -0.585 6.585 16 N -0.582 5.582 17 C 0.251 3.749 18 C -0.549 4.549 19 H 0.048 0.952 20 C 0.024 3.976 21 N -0.911 5.911 22 Si 0.951 3.049 23 H -0.273 1.273 24 H -0.268 1.268 25 H -0.282 1.282 26 C 0.074 3.926 27 C -0.178 4.178 28 C -0.185 4.185 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.141 0.859 40 H 0.415 0.585 41 H 0.039 0.961 42 H 0.020 0.980 43 H 0.269 0.731 44 H 0.141 0.859 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.936 -0.873 0.665 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.666 4.666 3 C -0.213 4.213 4 S 2.660 3.340 5 O -0.948 6.948 6 O -0.974 6.974 7 C -0.797 4.797 8 C -0.029 4.029 9 C -0.175 4.175 10 C -0.056 4.056 11 C -0.196 4.196 12 C 0.149 3.851 13 N -0.349 5.349 14 C 0.407 3.593 15 O -0.466 6.466 16 N -0.313 5.313 17 C 0.130 3.870 18 C -0.588 4.588 19 H 0.067 0.933 20 C -0.177 4.177 21 N -0.550 5.550 22 Si 0.777 3.223 23 H -0.198 1.198 24 H -0.193 1.193 25 H -0.208 1.208 26 C -0.030 4.030 27 C -0.216 4.216 28 C -0.223 4.223 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.182 0.818 39 H 0.159 0.841 40 H 0.258 0.742 41 H 0.057 0.943 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.158 0.842 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.729 -0.929 1.061 16.789 hybrid contribution 1.564 -0.420 -0.059 1.621 sum -15.165 -1.349 1.002 15.258 Atomic orbital electron populations 1.21769 0.87057 1.04819 1.06223 1.29878 1.09487 1.09748 1.17467 1.21871 1.01956 0.90637 1.06855 1.06028 0.74414 0.75443 0.78139 1.93469 1.75793 1.80261 1.45236 1.93599 1.30077 1.86282 1.87477 1.29876 1.17394 1.23650 1.08805 1.21079 0.90201 0.96722 0.94901 1.21627 1.02587 0.93599 0.99735 1.21751 0.91844 1.00820 0.91200 1.21689 1.01707 0.93560 1.02684 1.17355 0.87599 0.93013 0.87093 1.43743 1.39540 1.39062 1.12576 1.15929 0.81747 0.81469 0.80138 1.90639 1.46024 1.34693 1.75269 1.46891 1.26387 1.47903 1.10104 1.19133 0.85184 0.87864 0.94836 1.21594 1.02650 0.93110 1.41435 0.93350 1.25609 1.00803 0.95791 0.95526 1.69969 1.31568 1.07602 1.45832 0.85607 0.79648 0.78886 0.78191 1.19772 1.19282 1.20833 1.21761 1.03952 0.95505 0.81826 1.23805 0.93671 1.01821 1.02275 1.23154 1.02714 0.93559 1.02897 0.89188 0.87770 0.90816 0.85413 0.91901 0.86820 0.89195 0.82059 0.81006 0.81813 0.84139 0.74178 0.94341 0.96198 0.92190 0.84164 0.86467 0.86668 0.86722 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.99 71.98 0.65 -2.00 16 2 C -0.55 -14.20 3.30 30.59 0.10 -14.10 16 3 C -0.15 -3.50 9.20 71.98 0.66 -2.84 16 4 S 2.47 82.17 4.06 -56.49 -0.23 81.94 16 5 O -0.95 -31.43 16.37 -127.65 -2.09 -33.52 16 6 O -0.98 -42.72 15.95 -127.65 -2.04 -44.76 16 7 C -0.71 -22.61 5.09 22.39 0.11 -22.49 16 8 C -0.01 -0.25 9.50 22.25 0.21 -0.04 16 9 C -0.16 -3.21 10.04 22.29 0.22 -2.99 16 10 C -0.04 -0.88 10.04 22.25 0.22 -0.66 16 11 C -0.18 -5.72 8.73 22.39 0.20 -5.53 16 12 C 0.25 9.00 6.39 38.15 0.24 9.24 16 13 N -0.70 -28.59 4.08 -317.18 -1.29 -29.88 16 14 C 0.70 29.49 7.89 179.06 1.41 30.91 16 15 O -0.58 -23.73 9.19 -4.00 -0.04 -23.77 16 16 N -0.58 -24.72 2.82 -820.05 -2.31 -27.03 16 17 C 0.25 12.29 5.15 85.63 0.44 12.73 16 18 C -0.55 -30.11 9.39 25.60 0.24 -29.87 16 19 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 20 C 0.02 1.33 5.46 84.65 0.46 1.79 16 21 N -0.91 -51.92 13.29 21.45 0.28 -51.64 16 22 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 C 0.07 2.64 6.62 44.99 0.30 2.94 16 27 C -0.18 -5.44 9.63 30.59 0.29 -5.15 16 28 C -0.18 -6.07 9.87 30.59 0.30 -5.77 16 29 H 0.09 1.47 7.87 -2.39 -0.02 1.45 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.37 7.81 -2.39 -0.02 1.35 16 32 H 0.13 3.56 7.00 -2.39 -0.02 3.54 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.16 3.45 7.21 -2.91 -0.02 3.43 16 37 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.14 5.09 5.72 -2.91 -0.02 5.07 16 40 H 0.42 18.26 3.54 -92.71 -0.33 17.94 16 41 H 0.04 1.91 8.03 -2.38 -0.02 1.89 16 42 H 0.02 1.04 6.09 -2.39 -0.01 1.02 16 43 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.14 4.55 8.09 -2.39 -0.02 4.53 16 45 H 0.12 4.09 5.21 -5.79 -0.03 4.06 16 46 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 48 H 0.07 2.61 7.60 -2.39 -0.02 2.59 16 Total: -1.00 -72.12 397.15 1.03 -71.10 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: 0.64 Total: 44.89 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 6.07 Total: -33.82 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -3.32 Total: -108.55 kcal Atomic # 8 Polarization: -97.89 SS G_CDS: -4.16 Total: -102.05 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 82.17 SS G_CDS: -0.23 Total: 81.94 kcal Total: -72.12 1.03 -71.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071920270.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.329 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds