Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48504 * 109.46827 * 269.99863 * 3 2 1 5 5 H 1.48501 * 109.47299 * 29.99868 * 3 2 1 6 6 H 1.48498 * 109.46853 * 149.99788 * 3 2 1 7 7 C 1.38651 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00137 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.35753 * 116.99798 * 185.46131 * 9 7 2 11 11 C 1.38879 * 120.07310 * 5.76861 * 10 9 7 12 12 C 1.38094 * 119.93261 * 179.97438 * 11 10 9 13 13 C 1.38298 * 120.06862 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.93156 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47185 * 89.99738 * 14 13 12 16 16 O 1.21273 * 120.00043 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99563 * 179.97438 * 15 14 13 18 18 C 1.46497 * 119.99599 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.59831 * 30.10311 * 18 17 15 20 20 C 1.52881 * 109.60263 * 269.62005 * 18 17 15 21 21 C 1.52140 * 110.80023 * 323.55640 * 20 18 17 22 22 C 1.51425 * 113.46079 * 292.46375 * 21 20 18 23 23 O 1.43145 * 110.94336 * 65.45251 * 22 21 20 24 24 C 1.36148 * 115.60015 * 273.24740 * 23 22 21 25 25 C 1.38902 * 119.79308 * 251.74448 * 24 23 22 26 26 C 1.38163 * 119.67627 * 177.75053 * 25 24 23 27 27 C 1.38288 * 120.23129 * 0.10097 * 26 25 24 28 28 C 1.38384 * 120.07382 * 0.38008 * 27 26 25 29 29 C 1.37948 * 120.35487 * 70.31398 * 24 23 22 30 30 C 1.38304 * 120.14143 * 0.27538 * 13 12 11 31 31 C 1.38100 * 120.06588 * 359.49280 * 30 13 12 32 32 H 0.96995 * 119.99850 * 359.97438 * 1 2 3 33 33 H 1.08002 * 120.03220 * 359.96208 * 11 10 9 34 34 H 1.07994 * 119.96582 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.46902 * 329.99537 * 14 13 12 36 36 H 1.09005 * 109.47101 * 209.99900 * 14 13 12 37 37 H 0.96999 * 120.00018 * 0.02562 * 17 15 14 38 38 H 1.08999 * 109.21279 * 83.90296 * 20 18 17 39 39 H 1.09004 * 109.21131 * 203.22259 * 20 18 17 40 40 H 1.09002 * 108.68862 * 171.43345 * 21 20 18 41 41 H 1.09005 * 108.58136 * 53.42059 * 21 20 18 42 42 H 1.08997 * 109.18226 * 305.07015 * 22 21 20 43 43 H 1.09010 * 109.14224 * 185.79783 * 22 21 20 44 44 H 1.08007 * 120.16322 * 357.75185 * 25 24 23 45 45 H 1.08004 * 119.88700 * 180.02562 * 26 25 24 46 46 H 1.07998 * 119.96706 * 180.35763 * 27 26 25 47 47 H 1.08000 * 120.18469 * 179.84729 * 28 27 26 48 48 H 1.08001 * 119.97042 * 179.72731 * 30 13 12 49 49 H 1.08004 * 120.03813 * 180.25638 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4049 -0.1136 11 6 3.2241 -3.5511 -0.3445 12 6 3.8540 -4.7744 -0.4611 13 6 5.2299 -4.8588 -0.3487 14 6 5.9142 -6.1953 -0.4771 15 6 6.2690 -6.4414 -1.9209 16 8 5.9937 -5.6129 -2.7626 17 7 6.8932 -7.5818 -2.2764 18 6 7.2376 -7.8213 -3.6801 19 1 7.4255 -6.8700 -4.1779 20 6 6.0856 -8.5483 -4.3740 21 6 5.4280 -9.5437 -3.4298 22 6 6.3211 -10.7116 -3.0676 23 8 7.4538 -10.2737 -2.3098 24 6 8.5285 -9.8668 -3.0400 25 6 9.6709 -10.6556 -3.0851 26 6 10.7425 -10.2635 -3.8641 27 6 10.6805 -9.0907 -4.5941 28 6 9.5460 -8.3000 -4.5410 29 6 8.4780 -8.6903 -3.7585 30 6 5.9786 -3.7200 -0.1136 31 6 5.3550 -2.4930 -0.0007 32 1 -0.4850 0.8400 0.0004 33 1 2.1496 -3.4857 -0.4326 34 1 3.2718 -5.6659 -0.6412 35 1 5.2445 -6.9814 -0.1284 36 1 6.8224 -6.1979 0.1258 37 1 7.1137 -8.2443 -1.6031 38 1 5.3443 -7.8181 -4.6986 39 1 6.4695 -9.0799 -5.2448 40 1 4.5242 -9.9286 -3.9022 41 1 5.1476 -9.0215 -2.5150 42 1 6.6666 -11.1951 -3.9813 43 1 5.7504 -11.4283 -2.4768 44 1 9.7212 -11.5711 -2.5142 45 1 11.6323 -10.8745 -3.9020 46 1 11.5185 -8.7912 -5.2060 47 1 9.4966 -7.3824 -5.1084 48 1 7.0524 -3.7897 -0.0219 49 1 5.9405 -1.6034 0.1788 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072275502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -47.471276 kcal Electronic energy + Delta-G solvation = -32253.696155 eV Core-core repulsion = 27918.668791 eV Total energy + Delta-G solvation = -4335.027364 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.32545 -39.61197 -38.83620 -37.90139 -36.74259 -35.85015 -33.13289 -32.46903 -31.98614 -31.21797 -30.55606 -30.16398 -27.84750 -26.73515 -25.29152 -24.66978 -23.23629 -22.03658 -21.66372 -21.50377 -20.32535 -19.85781 -18.38260 -17.83326 -17.40007 -17.15923 -16.72050 -16.23485 -15.65138 -15.62184 -15.39672 -14.99216 -14.65090 -14.58961 -14.25334 -14.09809 -13.85546 -13.75219 -13.65842 -13.58798 -13.35833 -13.08238 -12.66993 -12.61420 -12.56957 -12.40743 -12.15492 -11.91873 -11.71462 -11.47608 -11.25393 -11.09876 -10.98921 -10.85805 -10.69628 -10.61704 -10.42856 -10.09840 -9.71932 -9.35117 -9.31467 -9.09832 -8.96201 -8.80799 -8.16588 -7.24027 -6.36935 -4.02919 0.74485 0.86536 2.22638 2.23021 2.80104 2.97611 3.19373 3.26049 3.30113 3.44565 3.59634 4.14503 4.28361 4.39534 4.47553 4.53549 4.54899 4.59290 4.68678 4.88653 4.92200 4.93431 5.00528 5.06583 5.13247 5.14719 5.18623 5.24822 5.32352 5.38101 5.49877 5.58571 5.62551 5.69128 5.73424 5.79144 5.82929 5.86146 5.90306 6.02978 6.07105 6.20114 6.28154 6.40273 6.45864 6.63600 6.86503 7.03655 7.09675 7.29681 7.37459 7.56149 7.68587 7.85651 8.09509 8.37683 8.98762 9.62281 10.70886 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.001819 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.057348 B =15393.550459 C =15877.244606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.387 4.387 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.161 3.839 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.158 4.158 14 C -0.082 4.082 15 C 0.511 3.489 16 O -0.523 6.523 17 N -0.726 5.726 18 C 0.189 3.811 19 H 0.101 0.899 20 C -0.130 4.130 21 C -0.153 4.153 22 C 0.068 3.932 23 O -0.330 6.330 24 C 0.104 3.896 25 C -0.133 4.133 26 C -0.105 4.105 27 C -0.126 4.126 28 C -0.091 4.091 29 C -0.122 4.122 30 C -0.062 4.062 31 C -0.191 4.191 32 H 0.279 0.721 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.405 0.595 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.110 0.890 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.720 -25.716 -7.664 33.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.109 3.891 11 C -0.238 4.238 12 C -0.077 4.077 13 C -0.160 4.160 14 C -0.122 4.122 15 C 0.297 3.703 16 O -0.397 6.397 17 N -0.382 5.382 18 C 0.083 3.917 19 H 0.119 0.881 20 C -0.169 4.169 21 C -0.191 4.191 22 C -0.006 4.006 23 O -0.247 6.247 24 C 0.060 3.940 25 C -0.151 4.151 26 C -0.123 4.123 27 C -0.144 4.144 28 C -0.109 4.109 29 C -0.123 4.123 30 C -0.080 4.080 31 C -0.210 4.210 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.242 0.758 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.118 0.882 44 H 0.149 0.851 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.148 0.852 48 H 0.128 0.872 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 19.343 -24.730 -8.043 32.410 hybrid contribution 0.194 0.290 -0.031 0.350 sum 19.537 -24.440 -8.074 32.314 Atomic orbital electron populations 1.69652 1.05541 1.28397 1.48326 1.24470 0.95038 0.98819 0.95770 0.86178 0.80325 0.81437 0.78943 1.19931 1.20828 1.18353 1.20760 0.76954 0.96585 1.51976 0.87698 1.83586 1.22554 1.25785 1.80457 1.19134 0.91640 0.85572 0.92737 1.21221 1.01079 0.92200 1.09289 1.20553 0.93358 0.96660 0.97101 1.18702 0.93454 0.92992 1.10822 1.20423 1.01680 0.97422 0.92631 1.21020 0.76888 0.80633 0.91722 1.90731 1.51990 1.44514 1.52502 1.46240 1.61679 1.21577 1.08666 1.19877 0.90274 0.97733 0.83775 0.88134 1.21765 0.98234 0.98711 0.98191 1.21649 0.99150 0.96882 1.01417 1.22576 0.85798 0.95930 0.96302 1.86249 1.22574 1.83007 1.32830 1.18465 0.88689 0.92508 0.94307 1.21317 0.93897 0.99812 1.00085 1.21084 0.98184 0.96766 0.96261 1.21231 0.98127 0.95047 0.99996 1.21015 0.92186 0.99736 0.98005 1.20421 0.96978 0.95862 0.99008 1.20403 0.98016 0.91495 0.98127 1.20144 0.91957 0.97795 1.11110 0.91131 0.84998 0.87591 0.88920 0.88939 0.75802 0.90274 0.91283 0.90523 0.90330 0.92521 0.88233 0.85150 0.85488 0.85525 0.85188 0.87235 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 13.96 55.48 0.77 -25.15 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 22.24 28.62 -169.99 -4.86 17.38 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.39 -11.20 9.90 30.88 0.31 -10.90 16 8 H 0.11 3.10 5.53 -52.49 -0.29 2.81 16 9 O -0.22 -5.98 8.59 0.04 0.00 -5.98 16 10 C 0.16 3.90 6.65 -39.10 -0.26 3.64 16 11 C -0.22 -4.95 9.13 -39.40 -0.36 -5.31 16 12 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 13 C -0.16 -2.75 4.38 -104.57 -0.46 -3.21 16 14 C -0.08 -1.04 5.83 -29.03 -0.17 -1.21 16 15 C 0.51 7.09 7.82 -10.98 -0.09 7.00 16 16 O -0.52 -9.63 15.62 5.56 0.09 -9.54 16 17 N -0.73 -7.76 3.26 -54.54 -0.18 -7.94 16 18 C 0.19 1.90 2.70 -68.68 -0.19 1.72 16 19 H 0.10 1.18 7.22 -51.93 -0.38 0.81 16 20 C -0.13 -1.17 5.55 -27.23 -0.15 -1.32 16 21 C -0.15 -1.17 5.34 -27.97 -0.15 -1.32 16 22 C 0.07 0.44 6.48 36.36 0.24 0.68 16 23 O -0.33 -2.71 8.29 -20.21 -0.17 -2.88 16 24 C 0.10 0.87 5.30 -39.44 -0.21 0.67 16 25 C -0.13 -0.95 10.01 -39.36 -0.39 -1.34 16 26 C -0.10 -0.65 10.03 -39.59 -0.40 -1.05 16 27 C -0.13 -0.82 10.05 -39.51 -0.40 -1.22 16 28 C -0.09 -0.71 9.70 -39.60 -0.38 -1.09 16 29 C -0.12 -1.07 4.81 -104.34 -0.50 -1.57 16 30 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 31 C -0.19 -4.00 9.99 -39.39 -0.39 -4.40 16 32 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.13 3.12 5.72 -52.49 -0.30 2.82 16 34 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.41 3.81 6.58 -40.82 -0.27 3.54 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.70 6.95 -51.93 -0.36 0.34 16 42 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 43 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 46 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 47 H 0.13 0.88 7.99 -52.49 -0.42 0.46 16 48 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 49 H 0.12 2.27 8.06 -52.48 -0.42 1.84 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -33.68 401.20 -9.73 -43.41 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.61 Total: 6.22 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -4.82 Total: -21.56 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.60 Total: -33.09 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.08 Total: -18.40 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.86 Total: 17.38 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.68 -9.73 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072275502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.063 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds