Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48503 * 109.46896 * 269.99472 * 3 2 1 5 5 H 1.48500 * 109.47031 * 29.99802 * 3 2 1 6 6 H 1.48502 * 109.46870 * 149.99803 * 3 2 1 7 7 C 1.38652 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00546 * 0.02562 * 7 2 1 9 9 O 1.34828 * 119.99525 * 180.02562 * 7 2 1 10 10 C 1.35755 * 116.99663 * 185.44021 * 9 7 2 11 11 C 1.38872 * 120.07264 * 5.73485 * 10 9 7 12 12 C 1.38100 * 119.93620 * 179.97438 * 11 10 9 13 13 C 1.38309 * 120.06425 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.92876 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47312 * 89.99649 * 14 13 12 16 16 O 1.21281 * 119.99688 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00199 * 179.97438 * 15 14 13 18 18 C 1.46499 * 120.00036 * 180.02562 * 17 15 14 19 19 H 1.08991 * 109.72488 * 319.87830 * 18 17 15 20 20 C 1.52888 * 109.59824 * 80.27521 * 18 17 15 21 21 C 1.52147 * 110.79700 * 36.47708 * 20 18 17 22 22 C 1.51433 * 113.45562 * 67.50736 * 21 20 18 23 23 O 1.43136 * 110.95063 * 294.51729 * 22 21 20 24 24 C 1.36158 * 115.60638 * 86.78426 * 23 22 21 25 25 C 1.38893 * 119.81902 * 109.56720 * 24 23 22 26 26 C 1.38166 * 119.67406 * 181.01991 * 25 24 23 27 27 C 1.38291 * 120.22461 * 0.04713 * 26 25 24 28 28 C 1.38388 * 120.07603 * 359.55007 * 27 26 25 29 29 C 1.37940 * 120.33407 * 289.74811 * 24 23 22 30 30 C 1.38302 * 120.13733 * 0.27454 * 13 12 11 31 31 C 1.38103 * 120.06999 * 359.49187 * 30 13 12 32 32 H 0.97003 * 119.99718 * 0.02562 * 1 2 3 33 33 H 1.08001 * 120.03370 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.97046 * 180.02562 * 12 11 10 35 35 H 1.09006 * 109.47539 * 330.00013 * 14 13 12 36 36 H 1.09003 * 109.47172 * 209.99830 * 14 13 12 37 37 H 0.97001 * 119.99636 * 0.02562 * 17 15 14 38 38 H 1.08998 * 109.21078 * 276.13973 * 20 18 17 39 39 H 1.08996 * 109.21253 * 156.81826 * 20 18 17 40 40 H 1.08995 * 108.68803 * 188.53591 * 21 20 18 41 41 H 1.09001 * 108.68440 * 306.61599 * 21 20 18 42 42 H 1.08996 * 109.17854 * 54.89322 * 22 21 20 43 43 H 1.09000 * 109.18145 * 174.18775 * 22 21 20 44 44 H 1.08006 * 120.16552 * 1.03983 * 25 24 23 45 45 H 1.08002 * 119.89121 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.96068 * 179.57258 * 27 26 25 47 47 H 1.08002 * 120.17763 * 179.97438 * 28 27 26 48 48 H 1.07998 * 119.96388 * 179.72477 * 30 13 12 49 49 H 1.07991 * 120.03448 * 180.25482 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4051 -0.1131 11 6 3.2238 -3.5513 -0.3429 12 6 3.8537 -4.7748 -0.4591 13 6 5.2297 -4.8591 -0.3474 14 6 5.9139 -6.1957 -0.4753 15 6 6.2680 -6.4427 -1.9191 16 8 5.9922 -5.6147 -2.7613 17 7 6.8919 -7.5833 -2.2744 18 6 7.2365 -7.8232 -3.6779 19 1 6.4242 -7.4822 -4.3196 20 6 8.5185 -7.0671 -4.0277 21 6 9.4862 -7.0724 -2.8536 22 6 10.0442 -8.4445 -2.5387 23 8 9.0109 -9.3258 -2.0864 24 6 8.3321 -9.9874 -3.0639 25 6 8.5110 -11.3554 -3.2243 26 6 7.8369 -12.0201 -4.2306 27 6 6.9887 -11.3278 -5.0755 28 6 6.8045 -9.9662 -4.9100 29 6 7.4708 -9.3053 -3.8979 30 6 5.9785 -3.7201 -0.1134 31 6 5.3548 -2.4930 -0.0010 32 1 -0.4850 0.8401 -0.0004 33 1 2.1495 -3.4860 -0.4315 34 1 3.2714 -5.6666 -0.6383 35 1 5.2444 -6.9817 -0.1258 36 1 6.8224 -6.1979 0.1271 37 1 7.1127 -8.2454 -1.6007 38 1 8.2691 -6.0370 -4.2822 39 1 8.9929 -7.5431 -4.8858 40 1 10.3150 -6.4022 -3.0812 41 1 8.9671 -6.6977 -1.9715 42 1 10.5015 -8.8599 -3.4367 43 1 10.8019 -8.3530 -1.7605 44 1 9.1735 -11.8970 -2.5653 45 1 7.9731 -13.0838 -4.3582 46 1 6.4692 -11.8504 -5.8651 47 1 6.1427 -9.4239 -5.5691 48 1 7.0523 -3.7898 -0.0222 49 1 5.9405 -1.6034 0.1776 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072275503.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = -47.095744 kcal Electronic energy + Delta-G solvation = -32293.776798 eV Core-core repulsion = 27958.765718 eV Total energy + Delta-G solvation = -4335.011080 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32025 -39.61223 -38.84004 -37.89211 -36.74284 -35.81386 -33.14441 -32.46571 -31.98031 -31.22276 -30.54999 -30.16463 -27.84139 -26.72626 -25.30546 -24.66297 -23.23409 -22.03882 -21.64859 -21.49777 -20.32725 -19.81781 -18.40266 -17.83636 -17.37970 -17.14216 -16.78172 -16.22779 -15.64177 -15.52737 -15.43074 -14.97236 -14.72619 -14.53843 -14.28420 -14.07722 -13.81478 -13.78867 -13.66010 -13.57174 -13.35958 -13.08357 -12.64958 -12.64097 -12.54491 -12.40130 -12.15693 -11.91753 -11.68727 -11.48278 -11.24984 -11.08673 -10.97686 -10.86395 -10.69649 -10.61896 -10.42788 -10.09936 -9.71230 -9.34976 -9.32767 -9.08435 -8.95160 -8.80758 -8.16627 -7.24072 -6.36840 -4.02832 0.74353 0.85882 2.22505 2.23042 2.80924 2.98251 3.19791 3.25977 3.29980 3.44350 3.58926 4.12809 4.28299 4.40049 4.48134 4.53588 4.55574 4.60691 4.68907 4.88589 4.92570 4.93325 5.01732 5.06606 5.13522 5.14796 5.18721 5.25812 5.31834 5.40147 5.49757 5.59798 5.63219 5.68859 5.73960 5.82348 5.82519 5.88257 5.90587 6.02816 6.06543 6.20134 6.28206 6.40231 6.45793 6.63457 6.86416 7.04151 7.09520 7.29617 7.37673 7.56187 7.68584 7.85809 8.09554 8.38160 8.98799 9.62260 10.70986 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.020837 B = 0.001821 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.469737 B =15370.684940 C =15869.981033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.387 4.387 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.161 3.839 11 C -0.218 4.218 12 C -0.059 4.059 13 C -0.158 4.158 14 C -0.082 4.082 15 C 0.511 3.489 16 O -0.522 6.522 17 N -0.726 5.726 18 C 0.192 3.808 19 H 0.095 0.905 20 C -0.130 4.130 21 C -0.151 4.151 22 C 0.069 3.931 23 O -0.328 6.328 24 C 0.105 3.895 25 C -0.133 4.133 26 C -0.104 4.104 27 C -0.127 4.127 28 C -0.090 4.090 29 C -0.123 4.123 30 C -0.062 4.062 31 C -0.191 4.191 32 H 0.279 0.721 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.404 0.596 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.109 0.891 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.033 -24.940 -7.421 33.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.109 3.891 11 C -0.238 4.238 12 C -0.077 4.077 13 C -0.159 4.159 14 C -0.122 4.122 15 C 0.297 3.703 16 O -0.396 6.396 17 N -0.381 5.381 18 C 0.087 3.913 19 H 0.113 0.887 20 C -0.169 4.169 21 C -0.189 4.189 22 C -0.005 4.005 23 O -0.245 6.245 24 C 0.061 3.939 25 C -0.151 4.151 26 C -0.122 4.122 27 C -0.145 4.145 28 C -0.108 4.108 29 C -0.124 4.124 30 C -0.080 4.080 31 C -0.210 4.210 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.240 0.760 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.149 0.851 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.148 0.852 48 H 0.127 0.873 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.676 -23.939 -7.798 32.578 hybrid contribution 0.239 0.320 -0.030 0.401 sum 20.915 -23.619 -7.828 32.505 Atomic orbital electron populations 1.69656 1.05541 1.28392 1.48317 1.24473 0.95041 0.98821 0.95779 0.86175 0.80317 0.81438 0.78936 1.19935 1.20828 1.18359 1.20762 0.76952 0.96591 1.51972 0.87691 1.83586 1.22559 1.25781 1.80463 1.19131 0.91644 0.85566 0.92748 1.21223 1.01091 0.92190 1.09251 1.20572 0.93394 0.96681 0.97046 1.18701 0.93449 0.92983 1.10809 1.20423 1.01670 0.97425 0.92647 1.20996 0.76649 0.80861 0.91755 1.90735 1.52195 1.44310 1.52396 1.46214 1.61503 1.21784 1.08560 1.19839 0.97607 0.89313 0.84523 0.88725 1.21752 0.95085 1.02048 0.98007 1.21626 0.99819 0.97278 1.00182 1.22558 0.88351 0.89086 1.00517 1.86271 1.49332 1.58538 1.30362 1.18469 0.94100 0.91003 0.90332 1.21305 1.01359 0.93639 0.98835 1.21090 0.96319 1.00071 0.94710 1.21233 0.99071 0.94212 0.99942 1.21016 0.98325 0.94415 0.97089 1.20372 0.98679 0.96004 0.97365 1.20386 0.97962 0.91480 0.98195 1.20138 0.91953 0.97787 1.11153 0.91131 0.84998 0.87570 0.88942 0.88948 0.75964 0.90111 0.91383 0.90661 0.90398 0.92595 0.88330 0.85140 0.85472 0.85508 0.85177 0.87274 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 13.96 55.48 0.77 -25.18 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 22.23 28.62 -169.99 -4.86 17.37 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.39 -11.21 9.90 30.89 0.31 -10.91 16 8 H 0.11 3.10 5.53 -52.49 -0.29 2.81 16 9 O -0.22 -5.98 8.59 0.04 0.00 -5.98 16 10 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.22 -4.96 9.13 -39.40 -0.36 -5.32 16 12 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 13 C -0.16 -2.73 4.38 -104.57 -0.46 -3.19 16 14 C -0.08 -1.04 5.83 -29.04 -0.17 -1.21 16 15 C 0.51 7.02 7.38 -10.98 -0.08 6.94 16 16 O -0.52 -9.52 15.77 5.56 0.09 -9.43 16 17 N -0.73 -7.70 3.35 -54.53 -0.18 -7.88 16 18 C 0.19 1.93 2.56 -68.67 -0.18 1.76 16 19 H 0.09 1.09 7.54 -51.93 -0.39 0.70 16 20 C -0.13 -1.20 5.42 -27.22 -0.15 -1.35 16 21 C -0.15 -1.19 5.34 -27.96 -0.15 -1.34 16 22 C 0.07 0.46 6.48 36.37 0.24 0.70 16 23 O -0.33 -2.72 8.46 -20.24 -0.17 -2.89 16 24 C 0.10 0.87 5.23 -39.45 -0.21 0.67 16 25 C -0.13 -0.94 10.01 -39.37 -0.39 -1.34 16 26 C -0.10 -0.64 10.03 -39.59 -0.40 -1.03 16 27 C -0.13 -0.81 10.05 -39.51 -0.40 -1.21 16 28 C -0.09 -0.69 9.69 -39.60 -0.38 -1.07 16 29 C -0.12 -1.07 4.79 -104.34 -0.50 -1.57 16 30 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 31 C -0.19 -3.98 9.99 -39.39 -0.39 -4.38 16 32 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.13 3.13 5.72 -52.49 -0.30 2.83 16 34 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 36 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.40 3.78 6.79 -40.82 -0.28 3.50 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.73 6.69 -51.93 -0.35 0.38 16 42 H 0.06 0.34 7.89 -51.93 -0.41 -0.07 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 45 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 46 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 47 H 0.13 0.86 7.98 -52.49 -0.42 0.44 16 48 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 49 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -33.59 401.10 -9.73 -43.32 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.63 Total: 6.17 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -4.79 Total: -21.55 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.59 Total: -33.06 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.08 Total: -18.30 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.86 Total: 17.37 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.59 -9.73 -43.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072275503.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.776 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds