Wall clock time and date at job start Tue Mar 31 2020 05:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48497 * 109.47292 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47377 * 300.00458 * 3 2 1 6 6 H 1.48506 * 109.46852 * 60.00291 * 3 2 1 7 7 C 1.38696 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00106 * 180.02562 * 7 2 1 9 9 O 1.34786 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.35589 * 117.00218 * 185.05832 * 9 7 2 11 11 C 1.39156 * 119.89882 * 354.45150 * 10 9 7 12 12 C 1.37629 * 120.09581 * 179.97438 * 11 10 9 13 13 C 1.39975 * 119.90062 * 0.02562 * 12 11 10 14 14 C 1.47056 * 120.09605 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99898 * 179.97438 * 14 13 12 16 16 C 1.46757 * 119.99657 * 179.72496 * 15 14 13 17 17 O 1.22061 * 120.00530 * 0.27453 * 16 15 14 18 18 N 1.33911 * 119.99581 * 180.27597 * 16 15 14 19 19 C 1.32991 * 119.99393 * 179.97438 * 18 16 15 20 20 N 1.35245 * 126.28532 * 180.02562 * 19 18 16 21 21 H 0.97006 * 126.22200 * 0.02562 * 20 19 18 22 22 N 1.40116 * 107.55852 * 179.97438 * 20 19 18 23 23 C 1.30685 * 108.29235 * 0.02562 * 22 20 19 24 24 C 1.47236 * 125.67825 * 179.97438 * 23 22 20 25 25 C 1.36199 * 125.95565 * 359.73687 * 24 23 22 26 26 C 1.40795 * 106.72271 * 179.88860 * 25 24 23 27 27 C 1.34812 * 107.07006 * 0.37445 * 26 25 24 28 28 O 1.34262 * 108.71192 * 359.76829 * 27 26 25 29 29 N 1.36193 * 126.29313 * 359.71740 * 19 18 16 30 30 H 0.97001 * 125.95737 * 0.02562 * 29 19 18 31 31 C 1.39970 * 119.80565 * 0.26899 * 13 12 11 32 32 C 1.37629 * 119.90007 * 359.40458 * 31 13 12 33 33 H 0.97003 * 119.99822 * 359.97438 * 1 2 3 34 34 H 1.07994 * 119.95392 * 359.97438 * 11 10 9 35 35 H 1.08004 * 120.04565 * 180.02562 * 12 11 10 36 36 H 1.08000 * 119.99873 * 359.97438 * 14 13 12 37 37 H 1.08000 * 120.00230 * 0.02562 * 15 14 13 38 38 H 1.07995 * 126.63802 * 359.97438 * 25 24 23 39 39 H 1.07999 * 126.46146 * 180.14579 * 26 25 24 40 40 H 1.08003 * 125.64495 * 179.76234 * 27 26 25 41 41 H 1.08007 * 120.05069 * 179.73142 * 31 13 12 42 42 H 1.07997 * 119.95102 * 180.29578 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0692 -3.5033 0.1054 11 6 3.4590 -3.4340 0.0913 12 6 4.2084 -4.5833 0.1991 13 6 3.5706 -5.8232 0.3226 14 6 4.3671 -7.0538 0.4387 15 6 3.7510 -8.2466 0.5580 16 6 4.5459 -9.4753 0.6678 17 8 5.7651 -9.4167 0.6560 18 7 3.9337 -10.6609 0.7808 19 6 4.6541 -11.7744 0.8797 20 7 4.1713 -13.0322 0.9982 21 1 3.2357 -13.2868 1.0262 22 7 5.2682 -13.9008 1.0720 23 6 6.3613 -13.1881 1.0009 24 6 7.7351 -13.7163 1.0425 25 6 8.0846 -15.0268 1.1665 26 6 9.4917 -15.0733 1.1589 27 6 9.9290 -13.8036 1.0406 28 8 8.8658 -12.9867 0.9706 29 7 6.0134 -11.8583 0.8745 30 1 6.6298 -11.1131 0.7980 31 6 2.1724 -5.8886 0.3302 32 6 1.4310 -4.7336 0.2286 33 1 -0.4850 0.8401 0.0004 34 1 3.9502 -2.4770 -0.0044 35 1 5.2870 -4.5285 0.1885 36 1 5.4458 -7.0019 0.4283 37 1 2.6723 -8.2986 0.5680 38 1 7.4124 -15.8677 1.2525 39 1 10.1051 -15.9588 1.2372 40 1 10.9633 -13.4946 1.0076 41 1 1.6762 -6.8437 0.4209 42 1 0.3522 -4.7828 0.2392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072277471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:46 Heat of formation + Delta-G solvation = 103.457142 kcal Electronic energy + Delta-G solvation = -29137.743613 eV Core-core repulsion = 24667.606220 eV Total energy + Delta-G solvation = -4470.137393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.116 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.41149 -42.66800 -39.37418 -39.01425 -36.84004 -34.71700 -34.28088 -33.75094 -33.10129 -32.24520 -31.46836 -30.35506 -29.54626 -28.16704 -25.68239 -24.45633 -24.33544 -22.79074 -22.30014 -22.09301 -21.09113 -20.81277 -19.22789 -18.72408 -18.03691 -17.76176 -17.14549 -17.10373 -16.83581 -16.59540 -16.28454 -15.88994 -15.49808 -14.74053 -14.41718 -14.35348 -14.32150 -13.78630 -13.75731 -13.63335 -13.45360 -13.32214 -12.98657 -12.53076 -12.36485 -11.92786 -11.89896 -11.72325 -11.65962 -11.59696 -11.11052 -11.09387 -10.74133 -10.67999 -10.52185 -10.43207 -9.54522 -9.51507 -9.43463 -9.38889 -8.82582 -8.48032 -8.30729 -7.03039 -6.60015 -4.14981 0.18638 0.74351 1.35564 1.53472 1.65980 1.82614 2.12887 2.20216 2.61392 2.80620 3.07075 3.08728 3.13332 3.80758 3.86121 3.90723 4.11139 4.22109 4.24689 4.40437 4.58336 4.77562 4.98185 5.01372 5.13110 5.13749 5.23817 5.37517 5.45533 5.63468 5.67516 5.73909 5.80630 6.09056 6.15834 6.20536 6.27681 6.53463 6.54849 6.66652 6.73252 6.86436 6.90243 7.02048 7.20967 7.30583 7.34352 7.36528 7.71100 7.85655 8.43439 8.85050 9.53011 10.56930 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.001306 C = 0.001245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.691822 B =21437.252919 C =22487.949266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.392 4.392 8 H 0.097 0.903 9 O -0.165 6.165 10 C 0.166 3.834 11 C -0.242 4.242 12 C -0.038 4.038 13 C -0.193 4.193 14 C 0.023 3.977 15 C -0.238 4.238 16 C 0.540 3.460 17 O -0.598 6.598 18 N -0.644 5.644 19 C 0.618 3.382 20 N -0.488 5.488 21 H 0.470 0.530 22 N -0.253 5.253 23 C 0.360 3.640 24 C 0.015 3.985 25 C -0.119 4.119 26 C -0.219 4.219 27 C 0.004 3.996 28 O -0.164 6.164 29 N -0.625 5.625 30 H 0.456 0.544 31 C -0.044 4.044 32 C -0.198 4.198 33 H 0.273 0.727 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.216 0.784 41 H 0.121 0.879 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.850 -29.910 2.449 34.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.114 0.886 9 O -0.066 6.066 10 C 0.110 3.890 11 C -0.261 4.261 12 C -0.056 4.056 13 C -0.194 4.194 14 C 0.003 3.997 15 C -0.259 4.259 16 C 0.334 3.666 17 O -0.482 6.482 18 N -0.410 5.410 19 C 0.258 3.742 20 N -0.218 5.218 21 H 0.321 0.679 22 N -0.078 5.078 23 C 0.083 3.917 24 C -0.037 4.037 25 C -0.142 4.142 26 C -0.238 4.238 27 C -0.066 4.066 28 O -0.059 6.059 29 N -0.270 5.270 30 H 0.311 0.689 31 C -0.062 4.062 32 C -0.217 4.217 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.233 0.767 41 H 0.139 0.861 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.806 -30.060 2.461 34.052 hybrid contribution 1.209 1.612 -0.084 2.017 sum 17.015 -28.448 2.377 33.233 Atomic orbital electron populations 1.70033 1.06105 1.28031 1.44471 1.25375 0.95888 0.99086 0.96126 0.85594 0.79219 0.79936 0.78412 1.18907 1.19962 1.19956 1.21506 0.92097 0.80614 1.52592 0.88561 1.83913 1.34906 1.11758 1.76029 1.19608 0.90318 0.87901 0.91174 1.21093 0.93659 0.99070 1.12284 1.20965 0.98502 0.91414 0.94729 1.18461 0.93012 0.92238 1.15704 1.22255 0.99030 0.91198 0.87209 1.22145 1.00187 0.90231 1.13357 1.19476 0.85959 0.87813 0.73346 1.90492 1.17084 1.89321 1.51289 1.70039 1.32586 0.95520 1.42820 1.20653 0.79230 0.89109 0.85243 1.45481 1.08679 1.00689 1.66971 0.67851 1.77580 0.90576 1.14028 1.25642 1.20453 0.91205 0.82202 0.97850 1.18152 0.81869 0.89513 1.14151 1.21969 0.96056 0.95234 1.00920 1.21908 0.94571 0.98524 1.08794 1.24478 0.91276 0.88851 1.02032 1.84112 1.13469 1.37402 1.70894 1.45289 1.08438 1.09025 1.64279 0.68907 1.20936 0.92680 0.97060 0.95517 1.20162 0.99797 0.90102 1.11683 0.91729 0.85176 0.86933 0.86219 0.85201 0.81671 0.82037 0.76735 0.86136 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.29 13.67 55.48 0.76 -23.53 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.89 29.55 -169.99 -5.02 14.87 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -10.65 9.48 30.90 0.29 -10.36 16 8 H 0.10 2.41 5.18 -52.49 -0.27 2.14 16 9 O -0.16 -4.58 9.74 0.67 0.01 -4.58 16 10 C 0.17 3.94 6.66 -38.90 -0.26 3.68 16 11 C -0.24 -5.17 9.14 -39.46 -0.36 -5.54 16 12 C -0.04 -0.70 9.78 -39.15 -0.38 -1.08 16 13 C -0.19 -3.51 5.87 -105.02 -0.62 -4.12 16 14 C 0.02 0.38 9.45 -37.23 -0.35 0.03 16 15 C -0.24 -3.82 9.51 -37.37 -0.36 -4.18 16 16 C 0.54 8.78 7.67 -13.20 -0.10 8.68 16 17 O -0.60 -10.20 13.60 4.86 0.07 -10.13 16 18 N -0.64 -9.19 10.52 -14.27 -0.15 -9.34 16 19 C 0.62 7.30 8.78 -321.67 -2.83 4.47 16 20 N -0.49 -4.16 7.39 29.91 0.22 -3.94 16 21 H 0.47 2.59 8.96 -182.58 -1.64 0.96 16 22 N -0.25 -2.18 12.62 32.45 0.41 -1.77 16 23 C 0.36 3.30 8.07 -154.07 -1.24 2.05 16 24 C 0.02 0.12 7.24 -36.66 -0.27 -0.15 16 25 C -0.12 -0.64 10.80 -39.35 -0.43 -1.07 16 26 C -0.22 -0.82 10.88 -39.83 -0.43 -1.25 16 27 C 0.00 0.01 12.08 29.52 0.36 0.37 16 28 O -0.16 -1.19 10.67 4.55 0.05 -1.15 16 29 N -0.63 -6.96 5.75 -11.52 -0.07 -7.02 16 30 H 0.46 5.53 6.27 -40.82 -0.26 5.28 16 31 C -0.04 -0.80 9.40 -39.16 -0.37 -1.17 16 32 C -0.20 -4.15 9.97 -39.46 -0.39 -4.54 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.13 2.75 5.62 -52.49 -0.29 2.45 16 35 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.12 1.91 7.52 -52.49 -0.39 1.51 16 37 H 0.13 1.96 6.06 -52.49 -0.32 1.64 16 38 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.16 0.20 8.06 -52.49 -0.42 -0.22 16 40 H 0.22 0.00 8.06 -52.48 -0.42 -0.43 16 41 H 0.12 1.88 6.16 -52.48 -0.32 1.56 16 42 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -33.75 379.52 -10.58 -44.33 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.74 Total: 9.70 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -7.83 Total: -13.17 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 1.17 Total: -45.59 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.12 Total: -15.85 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.75 -10.58 -44.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072277471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.789 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds