Wall clock time and date at job start Tue Mar 31 2020 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48497 * 109.47292 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47377 * 300.00458 * 3 2 1 6 6 H 1.48506 * 109.46852 * 60.00291 * 3 2 1 7 7 C 1.38696 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00106 * 180.02562 * 7 2 1 9 9 O 1.34786 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.35589 * 117.00218 * 185.05832 * 9 7 2 11 11 C 1.39156 * 119.89882 * 354.45150 * 10 9 7 12 12 C 1.37629 * 120.09581 * 179.97438 * 11 10 9 13 13 C 1.39975 * 119.90062 * 0.02562 * 12 11 10 14 14 C 1.47056 * 120.09605 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99898 * 179.97438 * 14 13 12 16 16 C 1.46757 * 119.99657 * 179.72496 * 15 14 13 17 17 O 1.22061 * 120.00530 * 0.27453 * 16 15 14 18 18 N 1.33911 * 119.99581 * 180.27597 * 16 15 14 19 19 C 1.32991 * 119.99393 * 179.97438 * 18 16 15 20 20 N 1.35245 * 126.28532 * 180.02562 * 19 18 16 21 21 H 0.97006 * 126.22200 * 0.02562 * 20 19 18 22 22 N 1.40116 * 107.55852 * 179.97438 * 20 19 18 23 23 C 1.30685 * 108.29235 * 0.02562 * 22 20 19 24 24 C 1.47236 * 125.67825 * 179.97438 * 23 22 20 25 25 C 1.36199 * 125.95565 * 359.73687 * 24 23 22 26 26 C 1.40795 * 106.72271 * 179.88860 * 25 24 23 27 27 C 1.34812 * 107.07006 * 0.37445 * 26 25 24 28 28 O 1.34262 * 108.71192 * 359.76829 * 27 26 25 29 29 N 1.36193 * 126.29313 * 359.71740 * 19 18 16 30 30 H 0.97001 * 125.95737 * 0.02562 * 29 19 18 31 31 C 1.39970 * 119.80565 * 0.26899 * 13 12 11 32 32 C 1.37629 * 119.90007 * 359.40458 * 31 13 12 33 33 H 0.97003 * 119.99822 * 359.97438 * 1 2 3 34 34 H 1.07994 * 119.95392 * 359.97438 * 11 10 9 35 35 H 1.08004 * 120.04565 * 180.02562 * 12 11 10 36 36 H 1.08000 * 119.99873 * 359.97438 * 14 13 12 37 37 H 1.08000 * 120.00230 * 0.02562 * 15 14 13 38 38 H 1.07995 * 126.63802 * 359.97438 * 25 24 23 39 39 H 1.07999 * 126.46146 * 180.14579 * 26 25 24 40 40 H 1.08003 * 125.64495 * 179.76234 * 27 26 25 41 41 H 1.08007 * 120.05069 * 179.73142 * 31 13 12 42 42 H 1.07997 * 119.95102 * 180.29578 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0692 -3.5033 0.1054 11 6 3.4590 -3.4340 0.0913 12 6 4.2084 -4.5833 0.1991 13 6 3.5706 -5.8232 0.3226 14 6 4.3671 -7.0538 0.4387 15 6 3.7510 -8.2466 0.5580 16 6 4.5459 -9.4753 0.6678 17 8 5.7651 -9.4167 0.6560 18 7 3.9337 -10.6609 0.7808 19 6 4.6541 -11.7744 0.8797 20 7 4.1713 -13.0322 0.9982 21 1 3.2357 -13.2868 1.0262 22 7 5.2682 -13.9008 1.0720 23 6 6.3613 -13.1881 1.0009 24 6 7.7351 -13.7163 1.0425 25 6 8.0846 -15.0268 1.1665 26 6 9.4917 -15.0733 1.1589 27 6 9.9290 -13.8036 1.0406 28 8 8.8658 -12.9867 0.9706 29 7 6.0134 -11.8583 0.8745 30 1 6.6298 -11.1131 0.7980 31 6 2.1724 -5.8886 0.3302 32 6 1.4310 -4.7336 0.2286 33 1 -0.4850 0.8401 0.0004 34 1 3.9502 -2.4770 -0.0044 35 1 5.2870 -4.5285 0.1885 36 1 5.4458 -7.0019 0.4283 37 1 2.6723 -8.2986 0.5680 38 1 7.4124 -15.8677 1.2525 39 1 10.1051 -15.9588 1.2372 40 1 10.9633 -13.4946 1.0076 41 1 1.6762 -6.8437 0.4209 42 1 0.3522 -4.7828 0.2392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072277471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:45 Heat of formation + Delta-G solvation = 83.206851 kcal Electronic energy + Delta-G solvation = -29138.621731 eV Core-core repulsion = 24667.606220 eV Total energy + Delta-G solvation = -4471.015511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.116 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.94519 -43.36901 -40.88063 -40.39194 -38.50934 -35.62736 -35.13510 -34.67209 -34.21352 -33.97965 -32.24626 -31.96005 -30.22096 -29.59699 -27.53336 -25.65314 -24.92210 -24.01340 -23.62019 -22.70803 -22.23690 -21.56263 -20.59108 -19.77035 -19.39624 -18.83473 -18.51457 -17.97572 -17.74319 -17.52061 -16.95924 -16.88269 -16.46358 -16.30747 -16.00827 -15.87911 -15.61697 -15.44520 -15.01390 -14.64296 -14.19947 -14.10656 -13.95916 -13.62954 -13.59824 -13.33153 -13.17936 -13.14569 -12.74387 -12.67144 -12.59592 -12.46342 -12.27096 -12.09910 -11.75099 -11.20785 -11.12328 -11.05410 -10.67390 -10.57876 -10.01627 -9.89097 -9.28253 -8.66303 -8.51611 -6.17982 -0.48607 -0.36194 0.36392 0.58278 0.64755 1.12509 1.19573 1.33997 1.36007 1.50080 1.54273 1.68049 1.97301 2.15626 2.64159 2.88912 3.00041 3.18465 3.35458 3.42823 3.46865 3.86720 3.92428 3.95244 4.08184 4.09690 4.16676 4.36793 4.45475 4.53517 4.61932 4.67699 4.90768 4.93411 4.94745 5.04208 5.19979 5.32901 5.34960 5.38170 5.44176 5.60024 5.63457 5.73940 5.80613 5.85292 5.97900 6.03944 6.10541 6.36902 6.92650 7.28507 7.69845 8.70812 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.001306 C = 0.001245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.691822 B =21437.252919 C =22487.949266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.019 4.019 3 Si 1.020 2.980 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.417 4.417 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.130 3.870 11 C -0.247 4.247 12 C -0.039 4.039 13 C -0.169 4.169 14 C 0.010 3.990 15 C -0.215 4.215 16 C 0.529 3.471 17 O -0.615 6.615 18 N -0.657 5.657 19 C 0.609 3.391 20 N -0.465 5.465 21 H 0.482 0.518 22 N -0.252 5.252 23 C 0.363 3.637 24 C -0.025 4.025 25 C -0.105 4.105 26 C -0.224 4.224 27 C 0.012 3.988 28 O -0.186 6.186 29 N -0.628 5.628 30 H 0.453 0.547 31 C -0.041 4.041 32 C -0.206 4.206 33 H 0.275 0.725 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.179 0.821 39 H 0.190 0.810 40 H 0.252 0.748 41 H 0.154 0.846 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.133 -33.563 2.834 39.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.217 4.217 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.493 4.493 8 H 0.124 0.876 9 O -0.126 6.126 10 C 0.078 3.922 11 C -0.266 4.266 12 C -0.057 4.057 13 C -0.170 4.170 14 C -0.010 4.010 15 C -0.236 4.236 16 C 0.322 3.678 17 O -0.500 6.500 18 N -0.425 5.425 19 C 0.249 3.751 20 N -0.196 5.196 21 H 0.337 0.663 22 N -0.077 5.077 23 C 0.087 3.913 24 C -0.077 4.077 25 C -0.128 4.128 26 C -0.242 4.242 27 C -0.057 4.057 28 O -0.082 6.082 29 N -0.270 5.270 30 H 0.306 0.694 31 C -0.059 4.059 32 C -0.225 4.225 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.165 0.835 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.196 0.804 39 H 0.207 0.793 40 H 0.268 0.732 41 H 0.171 0.829 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 19.110 -33.859 2.856 38.985 hybrid contribution 0.511 1.959 -0.143 2.030 sum 19.621 -31.900 2.713 37.549 Atomic orbital electron populations 1.70168 1.08088 1.29016 1.47865 1.26618 0.96828 1.02775 0.95486 0.84515 0.78339 0.74686 0.78602 1.17340 1.19279 1.19322 1.21957 0.92767 0.81203 1.53339 0.87637 1.83894 1.36245 1.12744 1.79684 1.20150 0.91596 0.87927 0.92544 1.21203 0.92970 1.00126 1.12298 1.21298 1.00153 0.90480 0.93730 1.18777 0.93135 0.92898 1.12178 1.22156 0.99334 0.90406 0.89080 1.22398 1.00868 0.90229 1.10060 1.19598 0.85849 0.88588 0.73788 1.90495 1.17561 1.89633 1.52311 1.69955 1.32771 0.95525 1.44271 1.20676 0.79682 0.89537 0.85244 1.45603 1.09522 0.99595 1.64903 0.66303 1.77630 0.90381 1.13398 1.26261 1.20834 0.92273 0.81174 0.97014 1.18209 0.81457 0.90317 1.17708 1.22320 0.97313 0.94657 0.98526 1.22291 0.93937 0.99560 1.08449 1.25371 0.91934 0.88828 0.99552 1.84106 1.14062 1.38522 1.71521 1.45275 1.08176 1.09838 1.63715 0.69430 1.21275 0.92902 0.97404 0.94279 1.20393 1.00314 0.90146 1.11627 0.91612 0.85527 0.83530 0.85277 0.84067 0.80390 0.79302 0.73202 0.82903 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.26 13.67 21.62 0.30 -54.97 16 2 C -0.02 -1.03 5.49 84.85 0.47 -0.57 16 3 Si 1.02 42.13 29.55 68.60 2.03 44.16 16 4 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.42 -23.89 9.48 67.93 0.64 -23.25 16 8 H 0.11 5.53 5.18 -2.91 -0.02 5.51 16 9 O -0.22 -13.10 9.74 -20.53 -0.20 -13.30 16 10 C 0.13 6.43 6.66 22.71 0.15 6.58 16 11 C -0.25 -10.70 9.14 22.35 0.20 -10.50 16 12 C -0.04 -1.38 9.78 22.55 0.22 -1.15 16 13 C -0.17 -5.77 5.87 -20.12 -0.12 -5.88 16 14 C 0.01 0.30 9.45 23.79 0.22 0.53 16 15 C -0.22 -6.32 9.51 23.70 0.23 -6.09 16 16 C 0.53 16.21 7.67 86.60 0.66 16.87 16 17 O -0.62 -20.07 13.60 -5.52 -0.07 -20.15 16 18 N -0.66 -17.62 10.52 -317.61 -3.34 -20.96 16 19 C 0.61 13.47 8.78 261.09 2.29 15.76 16 20 N -0.47 -7.07 7.39 -59.28 -0.44 -7.50 16 21 H 0.48 4.32 8.96 -213.30 -1.91 2.41 16 22 N -0.25 -3.87 12.62 -51.26 -0.65 -4.52 16 23 C 0.36 6.14 8.07 136.04 1.10 7.24 16 24 C -0.03 -0.34 7.24 24.16 0.18 -0.17 16 25 C -0.11 -0.88 10.80 22.42 0.24 -0.64 16 26 C -0.22 -0.93 10.88 22.11 0.24 -0.69 16 27 C 0.01 0.06 12.08 67.03 0.81 0.87 16 28 O -0.19 -2.39 10.67 -6.64 -0.07 -2.47 16 29 N -0.63 -13.27 5.75 -190.34 -1.10 -14.36 16 30 H 0.45 10.65 6.27 -92.71 -0.58 10.07 16 31 C -0.04 -1.43 9.40 22.55 0.21 -1.22 16 32 C -0.21 -8.75 9.97 22.35 0.22 -8.53 16 33 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.13 5.49 5.62 -2.91 -0.02 5.47 16 35 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.13 3.74 7.52 -2.91 -0.02 3.72 16 37 H 0.14 3.79 6.06 -2.91 -0.02 3.77 16 38 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.19 -0.33 8.06 -2.91 -0.02 -0.35 16 40 H 0.25 -1.00 8.06 -2.91 -0.02 -1.02 16 41 H 0.15 4.32 6.16 -2.91 -0.02 4.30 16 42 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -78.39 379.52 3.08 -75.31 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -1.35 Total: 29.60 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 7.98 Total: -10.84 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -5.23 Total: -102.31 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.35 Total: -35.91 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -78.39 3.08 -75.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072277471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.513 kcal (2) G-P(sol) polarization free energy of solvation -78.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds