Wall clock time and date at job start Tue Mar 31 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47281 * 2 1 4 4 C 1.50701 * 109.47148 * 239.99652 * 2 1 3 5 5 H 1.08000 * 120.00104 * 240.00852 * 4 2 1 6 6 C 1.37877 * 120.00149 * 59.99955 * 4 2 1 7 7 N 1.31519 * 119.99891 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00286 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46964 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46906 * 120.00365 * 8 6 4 11 11 H 1.48503 * 109.47314 * 240.00399 * 8 6 4 12 12 N 1.46502 * 109.46612 * 120.00273 * 2 1 3 13 13 C 1.46499 * 120.00560 * 59.99689 * 12 2 1 14 14 C 1.34784 * 119.99333 * 239.99795 * 12 2 1 15 15 O 1.21590 * 120.00356 * 0.02562 * 14 12 2 16 16 N 1.34782 * 119.99646 * 180.02562 * 14 12 2 17 17 C 1.40206 * 119.99609 * 174.48916 * 16 14 12 18 18 C 1.38686 * 120.09072 * 335.74212 * 17 16 14 19 19 C 1.38231 * 120.02286 * 179.97438 * 18 17 16 20 20 C 1.38280 * 120.20179 * 359.97438 * 19 18 17 21 21 C 1.38319 * 120.18005 * 0.03482 * 20 19 18 22 22 Cl 1.73598 * 120.01215 * 179.97438 * 21 20 19 23 23 C 1.38802 * 119.97341 * 359.68482 * 21 20 19 24 24 N 1.40000 * 120.10470 * 180.31837 * 23 21 20 25 25 C 1.47017 * 110.99771 * 61.94652 * 24 23 21 26 26 C 1.53104 * 109.25697 * 177.61244 * 25 24 23 27 27 O 1.43016 * 109.26113 * 56.84538 * 26 25 24 28 28 C 1.43018 * 113.73654 * 301.33238 * 27 26 25 29 29 C 1.47013 * 111.00223 * 298.31190 * 24 23 21 30 30 H 1.08997 * 109.47498 * 300.00485 * 1 2 3 31 31 H 1.09002 * 109.47576 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46978 * 59.99973 * 1 2 3 33 33 H 0.96993 * 119.99958 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.46822 * 89.99996 * 13 12 2 35 35 H 1.09000 * 109.47090 * 209.99837 * 13 12 2 36 36 H 1.08996 * 109.46874 * 330.00339 * 13 12 2 37 37 H 0.96997 * 119.99829 * 354.48595 * 16 14 12 38 38 H 1.07992 * 119.98661 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.90077 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.91294 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.50394 * 297.53904 * 25 24 23 42 42 H 1.08994 * 109.50634 * 57.67615 * 25 24 23 43 43 H 1.09005 * 109.50092 * 296.91167 * 26 25 24 44 44 H 1.09000 * 109.54187 * 176.80505 * 26 25 24 45 45 H 1.09003 * 109.50746 * 298.72907 * 28 27 26 46 46 H 1.08999 * 109.53998 * 178.62963 * 28 27 26 47 47 H 1.08999 * 109.50282 * 302.32684 * 29 24 23 48 48 H 1.09001 * 109.50694 * 62.44926 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6036 10 1 1.1678 -1.5867 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0182 -0.6907 1.1962 13 6 1.6642 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1286 1.8912 16 7 3.2427 -0.6712 3.1836 17 6 4.1413 -0.0280 4.0466 18 6 4.9487 0.9953 3.5729 19 6 5.8338 1.6287 4.4250 20 6 5.9175 1.2459 5.7511 21 6 5.1163 0.2262 6.2324 22 17 5.2254 -0.2514 7.8978 23 6 4.2208 -0.4110 5.3846 24 7 3.4039 -1.4389 5.8704 25 6 2.5086 -0.9455 6.9270 26 6 1.5944 -2.0844 7.3868 27 8 2.3958 -3.1844 7.8262 28 6 3.2793 -3.6904 6.8218 29 6 4.2105 -2.5679 6.3563 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 0.7095 1.1616 -3.4844 34 1 2.4155 -2.7377 0.9718 35 1 1.6236 -2.2852 2.5003 36 1 0.6903 -2.3002 0.9847 37 1 2.9446 -1.5734 3.3784 38 1 4.8859 1.2973 2.5380 39 1 6.4619 2.4251 4.0540 40 1 6.6104 1.7443 6.4129 41 1 3.1014 -0.5916 7.7704 42 1 1.9029 -0.1271 6.5379 43 1 0.9635 -2.4023 6.5567 44 1 0.9676 -1.7394 8.2091 45 1 2.6974 -4.0552 5.9753 46 1 3.8716 -4.5069 7.2350 47 1 4.8471 -2.9337 5.5507 48 1 4.8305 -2.2398 7.1906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072314428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:12 Heat of formation + Delta-G solvation = -15.838956 kcal Electronic energy + Delta-G solvation = -32242.464108 eV Core-core repulsion = 27938.668326 eV Total energy + Delta-G solvation = -4303.795782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93481 -39.74149 -38.50923 -36.83074 -35.74832 -35.51370 -34.35160 -32.81136 -31.41107 -30.22820 -30.00721 -28.67543 -26.55409 -26.20177 -25.24343 -24.23590 -23.37413 -22.29239 -21.06470 -20.62846 -19.18031 -18.17992 -17.37950 -17.07107 -16.40479 -16.31386 -15.90313 -15.55232 -15.35389 -15.24636 -15.09607 -14.93420 -14.55177 -14.15532 -14.05229 -13.80549 -13.72416 -13.20430 -12.82990 -12.66023 -12.55735 -12.22757 -12.11083 -11.90816 -11.69693 -11.60829 -11.56609 -11.25016 -11.10601 -11.05761 -10.85113 -10.80234 -10.73430 -10.32539 -10.20316 -10.16873 -9.94372 -9.39770 -9.15284 -8.72517 -8.61760 -8.47130 -8.03427 -7.57300 -6.10907 -4.18812 1.04185 1.22942 1.83407 3.10844 3.23755 3.32194 3.35244 3.38712 3.45590 3.66996 3.90475 4.31354 4.46282 4.67600 4.70360 4.86819 4.93363 4.99344 5.03978 5.09285 5.20435 5.25837 5.32876 5.37008 5.41458 5.47093 5.58101 5.61371 5.72843 5.75782 5.95350 6.03161 6.09154 6.20488 6.36617 6.55499 6.56148 6.66372 6.75444 6.83590 6.90296 6.95494 7.11001 7.20017 7.40551 7.65482 7.77731 8.01329 8.16337 8.55854 8.81935 9.10831 9.48197 10.94421 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.002743 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.911837 B =10204.599521 C =11295.296392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.600 5.600 13 C 0.086 3.914 14 C 0.696 3.304 15 O -0.579 6.579 16 N -0.677 5.677 17 C 0.227 3.773 18 C -0.125 4.125 19 C -0.084 4.084 20 C -0.137 4.137 21 C -0.044 4.044 22 Cl -0.063 7.063 23 C 0.043 3.957 24 N -0.491 5.491 25 C 0.006 3.994 26 C 0.067 3.933 27 O -0.384 6.384 28 C 0.067 3.933 29 C 0.001 3.999 30 H 0.012 0.988 31 H 0.030 0.970 32 H 0.095 0.905 33 H 0.263 0.737 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.411 0.589 38 H 0.164 0.836 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 -5.923 20.224 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.334 5.334 13 C -0.058 4.058 14 C 0.398 3.602 15 O -0.457 6.457 16 N -0.324 5.324 17 C 0.127 3.873 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.158 4.158 21 C -0.073 4.073 22 Cl -0.034 7.034 23 C -0.055 4.055 24 N -0.213 5.213 25 C -0.121 4.121 26 C -0.010 4.010 27 O -0.303 6.303 28 C -0.010 4.010 29 C -0.126 4.126 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.249 0.751 38 H 0.181 0.819 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.689 -5.337 19.740 21.225 hybrid contribution 0.626 -0.598 -0.287 0.912 sum 6.315 -5.935 19.453 21.296 Atomic orbital electron populations 1.22121 0.98206 0.99396 1.00954 1.18926 0.90691 0.94322 0.78851 0.91634 1.21355 1.31819 1.13032 0.90210 0.92217 1.24884 0.94941 0.94979 0.98957 1.69885 1.36384 1.22569 1.23712 0.86432 0.78599 0.79574 0.82731 1.19843 1.20948 1.20898 1.47632 1.50693 1.11560 1.23470 1.21524 1.02167 0.83367 0.98721 1.16000 0.79820 0.84871 0.79535 1.90823 1.62649 1.15315 1.76905 1.42931 1.46506 1.19219 1.23744 1.17264 0.89806 0.93617 0.86635 1.21774 0.93882 0.95889 1.03098 1.21071 0.97797 0.99225 0.92227 1.20877 1.00694 0.97650 0.96558 1.21367 1.01034 0.99937 0.84965 1.98319 1.96879 1.90597 1.17631 1.18059 0.98016 0.98081 0.91326 1.59683 1.19357 1.06579 1.35673 1.23108 0.96122 0.98601 0.94235 1.22645 0.92396 0.85949 1.00043 1.87976 1.54684 1.49365 1.38241 1.22633 0.91665 0.94979 0.91763 1.23174 0.96449 0.91785 1.01176 0.96919 0.95091 0.88649 0.92697 0.93134 0.93500 0.90343 0.75073 0.81904 0.84727 0.85260 0.91528 0.89623 0.92221 0.88394 0.92259 0.88432 0.89707 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.11 16 2 C 0.27 6.73 2.64 -69.08 -0.18 6.55 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -13.81 8.37 -34.44 -0.29 -14.10 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.56 11.32 55.43 0.63 -23.93 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.60 -12.34 2.75 -181.01 -0.50 -12.84 16 13 C 0.09 1.39 9.49 59.85 0.57 1.96 16 14 C 0.70 14.08 8.09 -86.91 -0.70 13.38 16 15 O -0.58 -13.58 12.81 5.29 0.07 -13.52 16 16 N -0.68 -10.80 5.16 -14.07 -0.07 -10.87 16 17 C 0.23 3.43 6.46 -83.43 -0.54 2.89 16 18 C -0.13 -1.92 8.72 -39.42 -0.34 -2.27 16 19 C -0.08 -1.03 10.04 -39.57 -0.40 -1.42 16 20 C -0.14 -1.55 9.82 -39.54 -0.39 -1.93 16 21 C -0.04 -0.53 5.97 -39.34 -0.23 -0.76 16 22 Cl -0.06 -0.67 22.68 -51.86 -1.18 -1.84 16 23 C 0.04 0.56 4.76 -83.48 -0.40 0.17 16 24 N -0.49 -5.59 4.03 -170.58 -0.69 -6.28 16 25 C 0.01 0.06 5.29 -3.71 -0.02 0.04 16 26 C 0.07 0.63 7.01 37.21 0.26 0.90 16 27 O -0.38 -4.10 10.83 -35.23 -0.38 -4.48 16 28 C 0.07 0.60 7.01 37.21 0.26 0.86 16 29 C 0.00 0.01 5.29 -3.71 -0.02 -0.01 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 32 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.60 6.29 -51.93 -0.33 0.27 16 36 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 37 H 0.41 5.70 5.96 -40.82 -0.24 5.45 16 38 H 0.16 2.94 5.74 -52.49 -0.30 2.63 16 39 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 41 H 0.07 0.73 4.97 -51.93 -0.26 0.47 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.70 4.93 -51.93 -0.26 0.45 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -29.96 384.78 -10.03 -39.99 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.50 Total: 7.59 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -2.19 Total: 4.76 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.63 Total: -53.93 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.31 Total: -17.99 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.18 Total: -1.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.96 -10.03 -39.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072314428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.150 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds