Wall clock time and date at job start Tue Mar 31 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42902 * 109.47348 * 2 1 4 4 C 1.35965 * 117.00608 * 180.02562 * 3 2 1 5 5 C 1.38727 * 119.98658 * 179.97438 * 4 3 2 6 6 C 1.38081 * 120.01877 * 180.02562 * 5 4 3 7 7 C 1.38879 * 119.97993 * 0.02562 * 6 5 4 8 8 N 1.40004 * 120.01194 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99613 * 188.01858 * 8 7 6 10 10 C 1.50695 * 109.47810 * 282.74403 * 9 8 7 11 11 H 1.07998 * 119.99562 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00389 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99797 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99945 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47338 * 89.99917 * 14 12 10 16 16 H 1.48497 * 109.47405 * 210.00038 * 14 12 10 17 17 H 1.48504 * 109.46959 * 330.00408 * 14 12 10 18 18 C 1.34770 * 120.00385 * 8.02838 * 8 7 6 19 19 O 1.21551 * 120.00067 * 7.34378 * 18 8 7 20 20 C 1.48023 * 120.00304 * 187.07280 * 18 8 7 21 21 C 1.39585 * 119.97323 * 326.28285 * 20 18 8 22 22 C 1.37762 * 120.03112 * 179.75884 * 21 20 18 23 23 C 1.39815 * 119.96798 * 0.51767 * 22 21 20 24 24 C 1.47377 * 120.02548 * 179.71908 * 23 22 21 25 25 C 1.50705 * 120.00019 * 185.30571 * 24 23 22 26 26 O 1.21226 * 120.00101 * 5.30455 * 24 23 22 27 27 C 1.39814 * 119.94829 * 359.73288 * 23 22 21 28 28 C 1.37764 * 119.97243 * 0.02562 * 27 23 22 29 29 C 1.38870 * 119.96646 * 0.25171 * 7 6 5 30 30 C 1.38081 * 119.98240 * 359.49175 * 29 7 6 31 31 H 1.09001 * 109.47254 * 300.00003 * 1 2 3 32 32 H 1.08997 * 109.47239 * 60.00013 * 1 2 3 33 33 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47254 * 239.99997 * 2 1 3 35 35 H 1.09001 * 109.47554 * 119.99313 * 2 1 3 36 36 H 1.08001 * 119.98823 * 359.97438 * 5 4 3 37 37 H 1.07996 * 120.00668 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.46931 * 42.74707 * 9 8 7 39 39 H 1.09006 * 109.46716 * 162.73978 * 9 8 7 40 40 H 0.97008 * 119.99438 * 179.97438 * 13 12 10 41 41 H 1.08001 * 119.98483 * 0.02562 * 21 20 18 42 42 H 1.08002 * 120.01395 * 180.23230 * 22 21 20 43 43 H 1.08996 * 109.47004 * 354.95063 * 25 24 23 44 44 H 1.08998 * 109.47045 * 114.95193 * 25 24 23 45 45 H 1.08998 * 109.46891 * 234.95530 * 25 24 23 46 46 H 1.08000 * 120.01638 * 179.97438 * 27 23 22 47 47 H 1.08002 * 119.98270 * 179.97438 * 28 27 23 48 48 H 1.08003 * 120.01093 * 179.72370 * 29 7 6 49 49 H 1.07998 * 119.99371 * 180.25318 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 3.8841 2.8076 -0.0011 6 6 5.2529 2.9894 -0.0022 7 6 6.0992 1.8882 -0.0033 8 7 7.4871 2.0718 -0.0049 9 6 8.3777 0.9223 -0.1830 10 6 8.4614 0.1469 1.1065 11 1 7.9069 0.4776 1.9723 12 6 9.2465 -0.9840 1.1813 13 7 9.3199 -1.6603 2.3068 14 14 10.2061 -1.5555 -0.3161 15 1 11.5501 -0.9239 -0.3134 16 1 10.3532 -3.0326 -0.2756 17 1 9.4778 -1.1641 -1.5497 18 6 8.0039 3.3058 0.1575 19 8 7.2756 4.2376 0.4381 20 6 9.4593 3.5254 0.0002 21 6 10.3599 2.5281 0.3781 22 6 11.7144 2.7292 0.2275 23 6 12.1874 3.9372 -0.2939 24 6 13.6365 4.1561 -0.4497 25 6 14.1517 5.4994 -0.8983 26 8 14.4140 3.2556 -0.2170 27 6 11.2846 4.9374 -0.6671 28 6 9.9303 4.7319 -0.5203 29 6 5.5680 0.6052 -0.0085 30 6 4.1990 0.4250 -0.0021 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 3.2257 3.6638 -0.0015 37 1 5.6651 3.9876 -0.0031 38 1 7.9859 0.2777 -0.9698 39 1 9.3717 1.2725 -0.4616 40 1 9.8720 -2.4562 2.3592 41 1 9.9944 1.5966 0.7846 42 1 12.4108 1.9559 0.5165 43 1 13.3105 6.1477 -1.1437 44 1 14.7363 5.9505 -0.0966 45 1 14.7808 5.3715 -1.7792 46 1 11.6488 5.8711 -1.0697 47 1 9.2328 5.5046 -0.8081 48 1 6.2255 -0.2517 -0.0138 49 1 3.7857 -0.5727 -0.0020 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076590439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:23 Heat of formation + Delta-G solvation = -31.727056 kcal Electronic energy + Delta-G solvation = -32627.305097 eV Core-core repulsion = 28292.960454 eV Total energy + Delta-G solvation = -4334.344643 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.25256 -41.05259 -40.55551 -39.11242 -38.28192 -36.95659 -34.71002 -33.48558 -32.62156 -32.18932 -31.93328 -30.86284 -30.11484 -29.17355 -25.88406 -25.16097 -24.72379 -23.75962 -23.10674 -22.58263 -21.28445 -20.79681 -19.25357 -19.20621 -18.48825 -18.30857 -17.81684 -17.00414 -16.81725 -16.53165 -16.42849 -16.40334 -16.04723 -15.93996 -15.54703 -15.17898 -15.07120 -14.82732 -14.67161 -14.53408 -14.27812 -14.22836 -13.96675 -13.88084 -13.58014 -13.40893 -13.22960 -13.13519 -12.96489 -12.92476 -12.80913 -12.63727 -12.42013 -12.27502 -11.91163 -11.79344 -11.70907 -11.69574 -10.93895 -10.87032 -10.66898 -10.50469 -10.10988 -9.94890 -9.93798 -8.47899 -8.42334 -6.51219 -0.75038 0.28319 0.35824 0.39503 1.11295 1.30084 1.33478 1.39975 1.76724 1.89191 2.21607 2.32611 2.68747 2.87872 2.90884 3.00432 3.30210 3.74465 3.87879 3.89706 3.96894 4.07720 4.10344 4.17137 4.24833 4.28923 4.32632 4.39025 4.45250 4.49335 4.56889 4.61017 4.68869 4.70389 4.77727 4.81248 4.93665 4.96647 5.05246 5.10306 5.12600 5.19334 5.21401 5.23189 5.25195 5.34899 5.40329 5.41931 5.52670 5.74046 5.98665 6.02446 6.39349 6.47907 6.49441 6.56623 6.93762 7.13206 8.72650 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.011132 B = 0.002825 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.679480 B = 9909.772476 C =12030.235729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 O -0.327 6.327 4 C 0.098 3.902 5 C -0.137 4.137 6 C -0.134 4.134 7 C 0.104 3.896 8 N -0.526 5.526 9 C 0.182 3.818 10 C -0.537 4.537 11 H 0.036 0.964 12 C 0.040 3.960 13 N -0.924 5.924 14 Si 0.913 3.087 15 H -0.258 1.258 16 H -0.277 1.277 17 H -0.239 1.239 18 C 0.549 3.451 19 O -0.545 6.545 20 C -0.116 4.116 21 C -0.129 4.129 22 C -0.091 4.091 23 C -0.158 4.158 24 C 0.395 3.605 25 C -0.192 4.192 26 O -0.502 6.502 27 C -0.063 4.063 28 C -0.074 4.074 29 C -0.112 4.112 30 C -0.186 4.186 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.148 0.852 37 H 0.173 0.827 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.273 0.727 41 H 0.158 0.842 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.194 0.806 47 H 0.159 0.841 48 H 0.129 0.871 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 11.404 -10.814 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 O -0.242 6.242 4 C 0.053 3.947 5 C -0.156 4.156 6 C -0.153 4.153 7 C 0.010 3.990 8 N -0.245 5.245 9 C 0.062 3.938 10 C -0.575 4.575 11 H 0.054 0.946 12 C -0.161 4.161 13 N -0.562 5.562 14 Si 0.735 3.265 15 H -0.183 1.183 16 H -0.202 1.202 17 H -0.162 1.162 18 C 0.341 3.659 19 O -0.427 6.427 20 C -0.119 4.119 21 C -0.147 4.147 22 C -0.109 4.109 23 C -0.159 4.159 24 C 0.276 3.724 25 C -0.248 4.248 26 O -0.380 6.380 27 C -0.080 4.080 28 C -0.092 4.092 29 C -0.132 4.132 30 C -0.205 4.205 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.166 0.834 37 H 0.189 0.811 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.175 0.825 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.211 0.789 47 H 0.176 0.824 48 H 0.146 0.854 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.041 11.375 -10.465 15.753 hybrid contribution 0.455 -1.669 0.335 1.762 sum -2.587 9.705 -10.130 14.265 Atomic orbital electron populations 1.21781 0.90923 1.04159 1.03322 1.23055 0.97229 0.81110 1.01919 1.86031 1.18182 1.30888 1.89078 1.19037 0.82685 0.94079 0.98944 1.20537 0.94341 0.95368 1.05394 1.22216 0.92274 1.00643 1.00189 1.18132 0.82514 0.94811 1.03513 1.45468 1.05098 1.08489 1.65424 1.20706 0.91895 0.84190 0.97045 1.21124 1.29386 1.10296 0.96659 0.94608 1.25550 0.96618 0.95593 0.98387 1.70003 1.39999 1.18365 1.27791 0.86221 0.80530 0.78769 0.80993 1.18261 1.20243 1.16221 1.18858 0.88788 0.81766 0.76488 1.90420 1.60310 1.42960 1.49012 1.20088 0.91289 0.97156 1.03351 1.22547 0.93587 1.00518 0.98019 1.21418 0.94791 0.97497 0.97237 1.21049 0.96598 0.95384 1.02848 1.23303 0.86818 0.91005 0.71236 1.22294 1.04878 0.92943 1.04686 1.90541 1.59674 1.47216 1.40601 1.21836 0.90798 0.99280 0.96114 1.21458 0.97034 0.94574 0.96157 1.20969 0.95539 0.95980 1.00723 1.21181 0.92672 0.99085 1.07600 0.91833 0.91432 0.88249 0.91315 0.92050 0.83403 0.81075 0.94068 0.90232 0.91791 0.82480 0.86095 0.86671 0.87195 0.87452 0.78944 0.82352 0.85361 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.04 0.89 5.46 71.98 0.39 1.28 16 3 O -0.33 -9.39 10.14 -93.16 -0.94 -10.33 16 4 C 0.10 3.24 6.69 22.51 0.15 3.39 16 5 C -0.14 -4.62 9.98 22.35 0.22 -4.40 16 6 C -0.13 -5.11 8.95 22.39 0.20 -4.91 16 7 C 0.10 4.37 6.41 38.14 0.24 4.62 16 8 N -0.53 -22.60 2.73 -638.22 -1.74 -24.34 16 9 C 0.18 8.04 3.11 85.63 0.27 8.31 16 10 C -0.54 -28.11 6.88 25.60 0.18 -27.94 16 11 H 0.04 2.19 8.06 -2.91 -0.02 2.17 16 12 C 0.04 2.13 5.45 84.66 0.46 2.60 16 13 N -0.92 -53.39 13.96 21.45 0.30 -53.09 16 14 Si 0.91 39.26 27.47 68.60 1.88 41.15 16 15 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.24 -9.39 6.54 99.48 0.65 -8.74 16 18 C 0.55 22.21 7.32 86.84 0.64 22.85 16 19 O -0.55 -22.56 13.33 -3.88 -0.05 -22.61 16 20 C -0.12 -4.04 5.53 -20.03 -0.11 -4.16 16 21 C -0.13 -4.87 7.41 22.48 0.17 -4.70 16 22 C -0.09 -3.07 9.58 22.54 0.22 -2.86 16 23 C -0.16 -4.01 5.87 -20.11 -0.12 -4.13 16 24 C 0.40 9.01 7.22 28.10 0.20 9.21 16 25 C -0.19 -2.03 10.19 71.24 0.73 -1.30 16 26 O -0.50 -15.99 17.09 -2.86 -0.05 -16.04 16 27 C -0.06 -1.20 9.43 22.54 0.21 -0.99 16 28 C -0.07 -1.85 9.58 22.48 0.22 -1.64 16 29 C -0.11 -4.52 8.89 22.38 0.20 -4.32 16 30 C -0.19 -6.38 9.03 22.35 0.20 -6.17 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 35 H 0.06 1.30 7.66 -2.39 -0.02 1.29 16 36 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.17 6.65 4.77 -40.97 -0.20 6.45 16 38 H 0.04 1.78 6.39 -2.39 -0.02 1.77 16 39 H 0.08 3.36 3.28 -2.58 -0.01 3.35 16 40 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 41 H 0.16 7.01 3.73 -2.91 -0.01 6.99 16 42 H 0.12 4.36 7.65 -2.91 -0.02 4.34 16 43 H 0.11 0.50 5.62 -2.39 -0.01 0.49 16 44 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.19 1.52 5.93 -2.91 -0.02 1.50 16 47 H 0.16 3.32 7.97 -2.91 -0.02 3.30 16 48 H 0.13 5.58 5.94 -2.91 -0.02 5.56 16 49 H 0.15 4.21 6.29 -2.91 -0.02 4.19 16 Total: -1.00 -71.87 396.75 5.57 -66.29 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: 0.77 Total: 35.72 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 5.40 Total: -16.75 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -1.44 Total: -77.43 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -1.04 Total: -48.99 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.88 Total: 41.15 kcal Total: -71.87 5.57 -66.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076590439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.567 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds