Wall clock time and date at job start Tue Mar 31 2020 05:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48504 * 109.46836 * 265.54871 * 3 2 1 5 5 H 1.48495 * 109.47193 * 25.54637 * 3 2 1 6 6 H 1.48494 * 109.47275 * 145.55261 * 3 2 1 7 7 C 1.38892 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99808 * 341.60729 * 7 2 1 9 9 N 1.37141 * 119.99889 * 161.59976 * 7 2 1 10 10 C 1.34778 * 119.99677 * 144.82379 * 9 7 2 11 11 O 1.21283 * 119.99780 * 184.81513 * 10 9 7 12 12 C 1.50705 * 120.00296 * 4.80676 * 10 9 7 13 13 H 1.08997 * 109.50296 * 50.44307 * 12 10 9 14 14 C 1.53101 * 109.50360 * 290.31780 * 12 10 9 15 15 N 1.47019 * 109.25417 * 183.21545 * 14 12 10 16 16 C 1.46892 * 110.99964 * 182.39089 * 15 14 12 17 17 C 1.50700 * 109.47384 * 302.41047 * 16 15 14 18 18 C 1.38240 * 120.00003 * 89.99380 * 17 16 15 19 19 C 1.38234 * 119.99857 * 180.25506 * 18 17 16 20 20 C 1.38240 * 120.00200 * 359.51902 * 19 18 17 21 21 C 1.38232 * 119.99377 * 0.46211 * 20 19 18 22 22 C 1.38231 * 120.00212 * 269.98295 * 17 16 15 23 23 C 1.47012 * 110.75051 * 58.61379 * 15 14 12 24 24 C 1.53093 * 109.25977 * 301.38151 * 23 15 14 25 25 O 1.43011 * 109.26012 * 56.85417 * 24 23 15 26 26 C 1.39785 * 120.00254 * 324.82059 * 9 7 2 27 27 C 1.38959 * 120.08021 * 120.85407 * 26 9 7 28 28 C 1.38079 * 119.92373 * 179.74372 * 27 26 9 29 29 C 1.38311 * 120.07758 * 0.53154 * 28 27 26 30 30 C 1.38309 * 120.15468 * 359.71868 * 29 28 27 31 31 C 1.38089 * 120.07955 * 0.02618 * 30 29 28 32 32 H 0.96996 * 119.99802 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.50924 * 63.28209 * 14 12 10 34 34 H 1.08996 * 109.50702 * 303.14805 * 14 12 10 35 35 H 1.08996 * 109.47740 * 182.41016 * 16 15 14 36 36 H 1.09000 * 109.47246 * 62.40663 * 16 15 14 37 37 H 1.07993 * 119.99937 * 359.97438 * 18 17 16 38 38 H 1.08001 * 120.00004 * 179.73316 * 19 18 17 39 39 H 1.08000 * 119.99918 * 180.25533 * 20 19 18 40 40 H 1.08002 * 119.99599 * 179.78593 * 21 20 19 41 41 H 1.07999 * 119.99551 * 359.97438 * 22 17 16 42 42 H 1.09001 * 109.50659 * 61.31917 * 23 15 14 43 43 H 1.09004 * 109.50164 * 181.44925 * 23 15 14 44 44 H 1.09005 * 109.50696 * 176.78650 * 24 23 15 45 45 H 1.08997 * 109.50961 * 296.87122 * 24 23 15 46 46 H 1.08003 * 120.03214 * 359.97438 * 27 26 9 47 47 H 1.07995 * 119.96221 * 180.24951 * 28 27 26 48 48 H 1.07998 * 119.92502 * 179.74749 * 29 28 27 49 49 H 1.08002 * 119.96410 * 180.02562 * 30 29 28 50 50 H 1.07994 * 120.03806 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.5899 1.9920 -1.3959 5 1 1.4019 2.6780 0.6037 6 1 3.4956 1.4691 0.7919 7 6 2.0087 -1.2028 0.0005 8 1 1.5100 -2.1141 0.2961 9 7 3.3275 -1.2334 -0.3743 10 6 4.1805 -2.0838 0.2305 11 8 5.3626 -2.0505 -0.0386 12 6 3.6654 -3.0759 1.2412 13 1 2.8169 -3.6160 0.8212 14 6 3.2252 -2.3348 2.5065 15 7 2.7962 -3.3129 3.5168 16 6 2.3115 -2.6395 4.7290 17 6 3.3974 -1.7506 5.2782 18 6 3.4896 -0.4351 4.8634 19 6 4.4889 0.3788 5.3631 20 6 5.3900 -0.1199 6.2853 21 6 5.2976 -1.4352 6.7003 22 6 4.3012 -2.2505 6.1969 23 6 3.8863 -4.2471 3.8332 24 6 4.3198 -4.9690 2.5546 25 8 4.7036 -4.0016 1.5737 26 6 3.7871 -0.3825 -1.3837 27 6 4.8013 0.5294 -1.1178 28 6 5.2565 1.3646 -2.1187 29 6 4.6966 1.3020 -3.3819 30 6 3.6835 0.3991 -3.6488 31 6 3.2269 -0.4429 -2.6540 32 1 -0.4849 0.8400 0.0004 33 1 2.3952 -1.6695 2.2686 34 1 4.0598 -1.7517 2.8958 35 1 2.0408 -3.3859 5.4757 36 1 1.4372 -2.0363 4.4846 37 1 2.7836 -0.0446 4.1454 38 1 4.5635 1.4053 5.0358 39 1 6.1683 0.5172 6.6788 40 1 6.0037 -1.8258 7.4181 41 1 4.2289 -3.2780 6.5214 42 1 4.7316 -3.6946 4.2436 43 1 3.5389 -4.9778 4.5637 44 1 5.1658 -5.6207 2.7734 45 1 3.4903 -5.5649 2.1739 46 1 5.2355 0.5822 -0.1303 47 1 6.0474 2.0708 -1.9137 48 1 5.0518 1.9592 -4.1618 49 1 3.2488 0.3525 -4.6364 50 1 2.4361 -1.1479 -2.8633 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078098374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:19 Heat of formation + Delta-G solvation = 8.202341 kcal Electronic energy + Delta-G solvation = -34649.119163 eV Core-core repulsion = 30414.224650 eV Total energy + Delta-G solvation = -4234.894513 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.36224 -39.64089 -38.57753 -37.34727 -35.62202 -34.89358 -32.18368 -31.43280 -31.33416 -30.76106 -30.33148 -29.09793 -27.69798 -25.34604 -24.61035 -24.03816 -22.39156 -22.14612 -21.93633 -21.29641 -19.99216 -19.21511 -18.13347 -16.87155 -16.66391 -16.02811 -15.87758 -15.70985 -15.32014 -15.29178 -15.08334 -14.67511 -14.52432 -14.44475 -14.37645 -13.71391 -13.61797 -13.39965 -13.20892 -13.05810 -12.86615 -12.71857 -12.58035 -12.37747 -12.32206 -12.16629 -11.69145 -11.27553 -11.25949 -11.09705 -11.02424 -10.98193 -10.88562 -10.69259 -10.61645 -10.37941 -10.06060 -9.37714 -9.25838 -8.86229 -8.84353 -8.68023 -8.52312 -8.26967 -8.17880 -7.63769 -6.61493 -4.26770 1.35935 1.44239 1.89542 2.00976 3.10810 3.23499 3.28326 3.42761 3.64394 3.78158 4.10552 4.15299 4.39455 4.63903 4.82311 4.84383 4.91500 5.02212 5.12354 5.15206 5.26507 5.33251 5.43055 5.46307 5.50082 5.52591 5.56534 5.64116 5.67971 5.71932 5.76720 5.84917 5.96239 5.97798 6.03927 6.05706 6.08852 6.17250 6.28426 6.34148 6.45839 6.48404 6.55624 6.60929 6.63567 6.91832 7.04001 7.06591 7.12668 7.13882 7.16988 7.24362 7.48513 7.60270 7.87660 8.13461 8.74064 9.11997 9.42619 10.45700 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.003929 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.402129 B = 7124.960277 C = 7670.576601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.083 3.917 3 Si 0.858 3.142 4 H -0.256 1.256 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.358 4.358 8 H 0.115 0.885 9 N -0.422 5.422 10 C 0.496 3.504 11 O -0.555 6.555 12 C 0.101 3.899 13 H 0.088 0.912 14 C 0.029 3.971 15 N -0.520 5.520 16 C 0.093 3.907 17 C -0.119 4.119 18 C -0.102 4.102 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.111 4.111 23 C 0.010 3.990 24 C 0.065 3.935 25 O -0.365 6.365 26 C 0.161 3.839 27 C -0.127 4.127 28 C -0.116 4.116 29 C -0.143 4.143 30 C -0.115 4.115 31 C -0.114 4.114 32 H 0.278 0.722 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.057 0.943 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.118 0.882 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 -2.161 8.389 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.127 4.127 3 Si 0.684 3.316 4 H -0.180 1.180 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.483 4.483 8 H 0.133 0.867 9 N -0.140 5.140 10 C 0.285 3.715 11 O -0.435 6.435 12 C 0.040 3.960 13 H 0.106 0.894 14 C -0.099 4.099 15 N -0.242 5.242 16 C -0.035 4.035 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.138 4.138 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.130 4.130 23 C -0.118 4.118 24 C -0.013 4.013 25 O -0.283 6.283 26 C 0.069 3.931 27 C -0.147 4.147 28 C -0.135 4.135 29 C -0.162 4.162 30 C -0.133 4.133 31 C -0.134 4.134 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.132 0.868 49 H 0.136 0.864 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.796 -2.384 7.987 9.617 hybrid contribution 0.621 1.449 0.578 1.679 sum 5.417 -0.935 8.565 10.177 Atomic orbital electron populations 1.69728 1.06132 1.28552 1.43861 1.25202 0.95034 0.98348 0.94117 0.87141 0.80180 0.83312 0.80985 1.18017 1.21809 1.18420 1.19158 0.83459 0.96925 1.48728 0.86741 1.41371 1.09502 1.33642 1.29441 1.20059 0.85532 0.83793 0.82090 1.90614 1.16054 1.72314 1.64499 1.21644 0.89968 0.90301 0.94108 0.89449 1.22827 1.02193 0.94393 0.90506 1.62642 1.34508 1.17810 1.09275 1.21278 0.95306 0.95630 0.91255 1.20697 0.98818 0.95254 0.97327 1.21242 0.98477 0.93426 0.98905 1.21189 0.95352 1.00012 0.97236 1.21125 0.99094 0.95784 0.98007 1.21086 0.98578 0.94201 1.00461 1.21024 0.95354 0.99385 0.97214 1.22889 0.93932 0.96520 0.98491 1.22626 1.00232 0.90811 0.87616 1.88062 1.37542 1.43558 1.59106 1.17739 0.94641 0.92152 0.88604 1.21190 0.98459 0.95360 0.99692 1.20852 0.99996 0.99385 0.93271 1.20942 0.98320 1.00218 0.96728 1.20910 0.97385 0.96371 0.98666 1.21163 1.00932 0.99998 0.91288 0.91184 0.86148 0.93714 0.89933 0.89109 0.85649 0.86166 0.86390 0.86382 0.86398 0.93462 0.90118 0.88746 0.92452 0.86318 0.86599 0.86770 0.86371 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.07 13.96 55.49 0.77 -21.30 16 2 C 0.08 2.07 5.30 -17.48 -0.09 1.97 16 3 Si 0.86 20.09 23.79 -169.99 -4.04 16.05 16 4 H -0.26 -6.03 6.49 56.52 0.37 -5.66 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.12 6.21 56.52 0.35 -5.77 16 7 C -0.36 -8.69 7.07 -14.93 -0.11 -8.80 16 8 H 0.12 2.87 6.75 -52.49 -0.35 2.51 16 9 N -0.42 -10.03 2.39 -58.97 -0.14 -10.17 16 10 C 0.50 11.81 6.89 -10.98 -0.08 11.73 16 11 O -0.55 -14.61 15.71 -14.14 -0.22 -14.83 16 12 C 0.10 2.07 2.43 -27.83 -0.07 2.00 16 13 H 0.09 1.78 7.30 -51.93 -0.38 1.40 16 14 C 0.03 0.53 3.89 -3.71 -0.01 0.52 16 15 N -0.52 -8.01 4.94 -235.76 -1.16 -9.18 16 16 C 0.09 1.24 5.58 -4.98 -0.03 1.21 16 17 C -0.12 -1.64 4.02 -104.62 -0.42 -2.06 16 18 C -0.10 -1.52 7.93 -39.58 -0.31 -1.83 16 19 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 20 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 21 C -0.13 -1.48 10.05 -39.59 -0.40 -1.88 16 22 C -0.11 -1.37 8.03 -39.59 -0.32 -1.68 16 23 C 0.01 0.14 5.13 -3.71 -0.02 0.12 16 24 C 0.06 0.95 7.01 37.21 0.26 1.21 16 25 O -0.36 -7.28 10.02 -54.93 -0.55 -7.83 16 26 C 0.16 3.72 2.47 -83.70 -0.21 3.51 16 27 C -0.13 -2.80 5.64 -39.37 -0.22 -3.02 16 28 C -0.12 -2.19 9.84 -39.61 -0.39 -2.58 16 29 C -0.14 -2.49 10.04 -39.53 -0.40 -2.89 16 30 C -0.11 -2.09 10.04 -39.61 -0.40 -2.48 16 31 C -0.11 -2.42 9.02 -39.37 -0.35 -2.77 16 32 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.12 2.46 6.10 -51.93 -0.32 2.14 16 34 H 0.04 0.90 6.22 -51.93 -0.32 0.58 16 35 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 37 H 0.13 1.96 8.02 -52.49 -0.42 1.54 16 38 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.21 8.03 -52.49 -0.42 0.79 16 42 H 0.05 0.70 6.33 -51.93 -0.33 0.37 16 43 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.12 2.71 7.55 -52.48 -0.40 2.32 16 47 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 48 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 49 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 50 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -30.11 392.62 -11.01 -41.12 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.23 Total: 11.90 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.36 Total: -11.68 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -0.53 Total: -40.64 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.77 Total: -22.65 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.04 Total: 16.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.11 -11.01 -41.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078098374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.326 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds