Wall clock time and date at job start Tue Mar 31 2020 05:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48502 * 109.46903 * 84.37655 * 3 2 1 5 5 H 1.48492 * 109.47210 * 204.37967 * 3 2 1 6 6 H 1.48498 * 109.47147 * 324.38231 * 3 2 1 7 7 C 1.38892 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99846 * 9.67775 * 7 2 1 9 9 N 1.37134 * 120.00062 * 189.67757 * 7 2 1 10 10 C 1.34776 * 120.00444 * 236.01904 * 9 7 2 11 11 O 1.21280 * 120.00534 * 185.63245 * 10 9 7 12 12 C 1.50709 * 119.99627 * 5.62844 * 10 9 7 13 13 H 1.09000 * 109.50210 * 308.83894 * 12 10 9 14 14 C 1.53095 * 109.50566 * 68.92750 * 12 10 9 15 15 N 1.47024 * 109.25246 * 176.73871 * 14 12 10 16 16 C 1.46897 * 110.99678 * 177.65006 * 15 14 12 17 17 C 1.50701 * 109.46944 * 57.63535 * 16 15 14 18 18 C 1.38231 * 119.99793 * 269.72134 * 17 16 15 19 19 C 1.38237 * 119.99787 * 179.81016 * 18 17 16 20 20 C 1.38234 * 120.00039 * 0.40570 * 19 18 17 21 21 C 1.38234 * 120.00162 * 359.85028 * 20 19 18 22 22 C 1.38237 * 119.99899 * 90.00223 * 17 16 15 23 23 C 1.47016 * 110.78902 * 301.44953 * 15 14 12 24 24 C 1.53104 * 109.25679 * 58.59640 * 23 15 14 25 25 O 1.43009 * 109.50392 * 188.75854 * 12 10 9 26 26 C 1.39789 * 119.99784 * 56.01510 * 9 7 2 27 27 C 1.38966 * 120.07572 * 174.71096 * 26 9 7 28 28 C 1.38080 * 119.91824 * 179.72509 * 27 26 9 29 29 C 1.38308 * 120.08246 * 0.54756 * 28 27 26 30 30 C 1.38308 * 120.15253 * 359.72459 * 29 28 27 31 31 C 1.38080 * 120.07837 * 359.97438 * 30 29 28 32 32 H 0.96999 * 120.00186 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.50765 * 296.71460 * 14 12 10 34 34 H 1.08997 * 109.51063 * 56.85392 * 14 12 10 35 35 H 1.09003 * 109.47143 * 177.63132 * 16 15 14 36 36 H 1.08993 * 109.47285 * 297.63410 * 16 15 14 37 37 H 1.08003 * 120.00177 * 0.02562 * 18 17 16 38 38 H 1.08002 * 120.00212 * 180.23576 * 19 18 17 39 39 H 1.08006 * 119.99966 * 179.83720 * 20 19 18 40 40 H 1.08001 * 120.00396 * 179.97438 * 21 20 19 41 41 H 1.07997 * 120.00137 * 359.97438 * 22 17 16 42 42 H 1.08989 * 109.50796 * 298.66038 * 23 15 14 43 43 H 1.09000 * 109.50250 * 178.52507 * 23 15 14 44 44 H 1.08990 * 109.50598 * 183.21627 * 24 23 15 45 45 H 1.09001 * 109.50808 * 63.08078 * 24 23 15 46 46 H 1.07998 * 120.03938 * 359.97438 * 27 26 9 47 47 H 1.08004 * 119.95828 * 180.30071 * 28 27 26 48 48 H 1.07994 * 119.92551 * 179.74609 * 29 28 27 49 49 H 1.07998 * 119.96338 * 180.02562 * 30 29 28 50 50 H 1.07999 * 120.04057 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.3769 2.1150 1.3934 5 1 3.6000 1.4089 -0.5779 6 1 1.5101 2.6155 -0.8154 7 6 2.0087 -1.2028 -0.0005 8 1 1.4802 -2.1314 -0.1582 9 7 3.3654 -1.2114 0.1991 10 6 4.1771 -1.7838 -0.7119 11 8 5.3650 -1.8826 -0.4886 12 6 3.6084 -2.3012 -2.0081 13 1 2.7595 -2.9522 -1.7990 14 6 3.1488 -1.1231 -2.8711 15 7 2.6676 -1.6287 -4.1651 16 6 2.1644 -0.5330 -5.0041 17 6 3.2554 0.4868 -5.2061 18 6 3.3882 1.5410 -4.3219 19 6 4.3914 2.4743 -4.5049 20 6 5.2565 2.3580 -5.5768 21 6 5.1204 1.3067 -6.4640 22 6 4.1196 0.3712 -6.2788 23 6 3.7247 -2.3799 -4.8576 24 6 4.1775 -3.5455 -3.9742 25 8 4.6133 -3.0377 -2.7102 26 6 3.9065 -0.6263 1.3475 27 6 5.2679 -0.7296 1.6064 28 6 5.7999 -0.1455 2.7388 29 6 4.9778 0.5320 3.6209 30 6 3.6215 0.6319 3.3693 31 6 3.0836 0.0556 2.2357 32 1 -0.4850 0.8400 -0.0004 33 1 2.3426 -0.5932 -2.3640 34 1 3.9853 -0.4438 -3.0349 35 1 1.8537 -0.9290 -5.9710 36 1 1.3126 -0.0617 -4.5139 37 1 2.7104 1.6336 -3.4862 38 1 4.4977 3.2959 -3.8120 39 1 6.0387 3.0887 -5.7212 40 1 5.7960 1.2160 -7.3017 41 1 4.0132 -0.4502 -6.9719 42 1 4.5708 -1.7212 -5.0531 43 1 3.3382 -2.7666 -5.8006 44 1 5.0003 -4.0710 -4.4586 45 1 3.3448 -4.2324 -3.8229 46 1 5.9097 -1.2626 0.9205 47 1 6.8587 -0.2212 2.9381 48 1 5.3960 0.9843 4.5079 49 1 2.9824 1.1620 4.0600 50 1 2.0245 0.1344 2.0396 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078098376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:23 Heat of formation + Delta-G solvation = 20.602354 kcal Electronic energy + Delta-G solvation = -34909.027769 eV Core-core repulsion = 30674.670962 eV Total energy + Delta-G solvation = -4234.356808 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.50945 -39.75040 -38.56174 -37.31569 -35.66458 -35.14864 -32.33850 -31.48125 -31.36395 -30.79856 -30.12920 -29.04616 -27.70114 -25.50347 -24.70696 -24.09642 -22.41730 -22.13764 -21.59257 -21.17862 -20.02738 -19.53529 -18.27680 -16.84998 -16.70406 -16.11035 -15.91655 -15.69282 -15.47630 -15.23875 -15.14012 -14.70377 -14.59967 -14.43942 -14.13314 -13.85098 -13.59330 -13.48999 -13.33419 -13.14216 -12.87030 -12.65777 -12.47238 -12.44214 -12.35600 -12.08949 -11.76821 -11.39860 -11.31227 -11.26507 -11.07080 -11.03922 -10.92474 -10.74071 -10.42291 -10.29905 -10.06705 -9.58149 -9.31509 -9.02259 -8.88271 -8.76268 -8.34387 -8.20072 -8.07391 -7.10478 -6.65329 -4.60173 1.33094 1.41001 2.01341 2.15081 3.00505 3.12448 3.21041 3.39162 3.54812 3.74884 3.95608 4.11551 4.52422 4.63933 4.73508 4.79657 4.83537 4.99419 5.09255 5.12062 5.23014 5.30459 5.39765 5.48364 5.51029 5.57872 5.60112 5.64147 5.69412 5.74578 5.81901 5.87619 5.94022 5.94756 6.02823 6.05472 6.24595 6.27887 6.37355 6.39523 6.44106 6.51802 6.52330 6.60252 6.79014 7.00784 7.09724 7.13044 7.13987 7.18138 7.27705 7.33567 7.48250 7.66639 7.92305 8.14303 8.69610 8.98512 9.28050 10.36364 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.004188 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.588228 B = 6684.742503 C = 7159.922610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.087 3.913 3 Si 0.856 3.144 4 H -0.251 1.251 5 H -0.259 1.259 6 H -0.284 1.284 7 C -0.370 4.370 8 H 0.111 0.889 9 N -0.405 5.405 10 C 0.507 3.493 11 O -0.537 6.537 12 C 0.101 3.899 13 H 0.095 0.905 14 C 0.032 3.968 15 N -0.518 5.518 16 C 0.092 3.908 17 C -0.119 4.119 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.110 4.110 23 C 0.010 3.990 24 C 0.065 3.935 25 O -0.366 6.366 26 C 0.159 3.841 27 C -0.187 4.187 28 C -0.110 4.110 29 C -0.169 4.169 30 C -0.107 4.107 31 C -0.157 4.157 32 H 0.280 0.720 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.181 0.819 47 H 0.113 0.887 48 H 0.108 0.892 49 H 0.113 0.887 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 1.680 -9.725 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.124 4.124 3 Si 0.681 3.319 4 H -0.176 1.176 5 H -0.183 1.183 6 H -0.211 1.211 7 C -0.496 4.496 8 H 0.129 0.871 9 N -0.115 5.115 10 C 0.298 3.702 11 O -0.418 6.418 12 C 0.040 3.960 13 H 0.113 0.887 14 C -0.096 4.096 15 N -0.240 5.240 16 C -0.036 4.036 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.012 4.012 25 O -0.284 6.284 26 C 0.063 3.937 27 C -0.206 4.206 28 C -0.129 4.129 29 C -0.188 4.188 30 C -0.126 4.126 31 C -0.177 4.177 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.077 0.923 46 H 0.197 0.803 47 H 0.131 0.869 48 H 0.126 0.874 49 H 0.131 0.869 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.755 1.293 -9.529 10.727 hybrid contribution 0.519 1.676 -0.110 1.758 sum 5.274 2.969 -9.638 11.381 Atomic orbital electron populations 1.69673 1.05980 1.28645 1.43724 1.25488 0.95185 0.98543 0.93180 0.87294 0.81032 0.83245 0.80292 1.17602 1.18336 1.21095 1.19041 0.79158 0.96022 1.55387 0.87130 1.41245 1.07459 1.48844 1.14002 1.20414 0.85475 0.79825 0.84524 1.90202 1.16388 1.57736 1.77474 1.21611 0.90582 0.93799 0.89999 0.88713 1.22735 1.01230 0.96316 0.89287 1.62607 1.34706 1.23223 1.03490 1.21295 0.95055 0.88964 0.98244 1.20696 0.99020 0.96912 0.95448 1.21204 0.98345 0.94062 0.98649 1.21184 0.95477 0.99283 0.97830 1.21124 0.99196 0.98405 0.95173 1.21099 0.98438 0.95154 0.99508 1.21028 0.95525 0.98868 0.97463 1.22903 0.94285 0.96771 0.97917 1.22638 0.99873 0.94623 0.84096 1.88045 1.37641 1.71242 1.31448 1.18490 0.92527 0.94871 0.87792 1.22886 0.95194 1.02942 0.99587 1.21022 0.98904 0.98107 0.94818 1.20926 0.94046 1.03490 1.00334 1.20816 0.95044 0.99819 0.96894 1.21190 1.01220 1.00204 0.95112 0.90939 0.86788 0.93855 0.89729 0.89175 0.86155 0.86198 0.86289 0.86274 0.86275 0.93439 0.89976 0.88631 0.92310 0.80321 0.86937 0.87354 0.86888 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.40 13.96 55.49 0.77 -20.63 16 2 C 0.09 2.11 3.53 -17.49 -0.06 2.05 16 3 Si 0.86 19.61 23.90 -169.99 -4.06 15.55 16 4 H -0.25 -5.69 6.07 56.52 0.34 -5.34 16 5 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.37 -9.02 6.73 -14.94 -0.10 -9.12 16 8 H 0.11 2.85 7.72 -52.49 -0.41 2.44 16 9 N -0.40 -9.68 2.13 -58.97 -0.13 -9.81 16 10 C 0.51 11.89 6.95 -10.98 -0.08 11.81 16 11 O -0.54 -13.35 12.92 -14.17 -0.18 -13.53 16 12 C 0.10 2.06 2.51 -27.83 -0.07 1.99 16 13 H 0.10 1.94 7.49 -51.93 -0.39 1.55 16 14 C 0.03 0.61 3.98 -3.71 -0.01 0.60 16 15 N -0.52 -8.11 4.93 -235.75 -1.16 -9.28 16 16 C 0.09 1.26 5.58 -4.98 -0.03 1.23 16 17 C -0.12 -1.68 4.01 -104.62 -0.42 -2.10 16 18 C -0.10 -1.62 7.94 -39.58 -0.31 -1.93 16 19 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 20 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 21 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 22 C -0.11 -1.36 8.03 -39.58 -0.32 -1.68 16 23 C 0.01 0.13 5.13 -3.71 -0.02 0.11 16 24 C 0.07 0.94 7.01 37.21 0.26 1.20 16 25 O -0.37 -7.12 10.02 -54.96 -0.55 -7.67 16 26 C 0.16 3.76 5.15 -83.69 -0.43 3.33 16 27 C -0.19 -4.16 9.06 -39.37 -0.36 -4.52 16 28 C -0.11 -2.10 10.04 -39.61 -0.40 -2.49 16 29 C -0.17 -3.05 10.04 -39.53 -0.40 -3.45 16 30 C -0.11 -2.10 9.95 -39.61 -0.39 -2.49 16 31 C -0.16 -3.54 5.81 -39.37 -0.23 -3.77 16 32 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.11 2.40 5.86 -51.93 -0.30 2.10 16 34 H 0.04 0.89 6.23 -51.93 -0.32 0.57 16 35 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 37 H 0.12 2.01 8.03 -52.48 -0.42 1.59 16 38 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.21 8.03 -52.49 -0.42 0.79 16 42 H 0.05 0.69 6.33 -51.93 -0.33 0.36 16 43 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 44 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.18 4.19 4.51 -56.35 -0.25 3.94 16 47 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 48 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 49 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 50 H 0.14 3.33 4.73 -52.49 -0.25 3.09 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -28.51 385.84 -10.99 -39.50 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.93 Total: 15.16 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -4.56 Total: -15.10 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.51 Total: -39.71 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.73 Total: -21.20 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.06 Total: 15.55 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.51 -10.99 -39.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078098376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.099 kcal (2) G-P(sol) polarization free energy of solvation -28.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds