Wall clock time and date at job start Tue Mar 31 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48502 * 109.46903 * 84.37655 * 3 2 1 5 5 H 1.48492 * 109.47210 * 204.37967 * 3 2 1 6 6 H 1.48498 * 109.47147 * 324.38231 * 3 2 1 7 7 C 1.38892 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99846 * 9.67775 * 7 2 1 9 9 N 1.37134 * 120.00062 * 189.67757 * 7 2 1 10 10 C 1.34776 * 120.00444 * 236.01904 * 9 7 2 11 11 O 1.21280 * 120.00534 * 185.63245 * 10 9 7 12 12 C 1.50709 * 119.99627 * 5.62844 * 10 9 7 13 13 H 1.09000 * 109.50210 * 308.83894 * 12 10 9 14 14 C 1.53095 * 109.50566 * 68.92750 * 12 10 9 15 15 N 1.47024 * 109.25246 * 176.73871 * 14 12 10 16 16 C 1.46897 * 110.99678 * 177.65006 * 15 14 12 17 17 C 1.50701 * 109.46944 * 57.63535 * 16 15 14 18 18 C 1.38231 * 119.99793 * 269.72134 * 17 16 15 19 19 C 1.38237 * 119.99787 * 179.81016 * 18 17 16 20 20 C 1.38234 * 120.00039 * 0.40570 * 19 18 17 21 21 C 1.38234 * 120.00162 * 359.85028 * 20 19 18 22 22 C 1.38237 * 119.99899 * 90.00223 * 17 16 15 23 23 C 1.47016 * 110.78902 * 301.44953 * 15 14 12 24 24 C 1.53104 * 109.25679 * 58.59640 * 23 15 14 25 25 O 1.43009 * 109.50392 * 188.75854 * 12 10 9 26 26 C 1.39789 * 119.99784 * 56.01510 * 9 7 2 27 27 C 1.38966 * 120.07572 * 174.71096 * 26 9 7 28 28 C 1.38080 * 119.91824 * 179.72509 * 27 26 9 29 29 C 1.38308 * 120.08246 * 0.54756 * 28 27 26 30 30 C 1.38308 * 120.15253 * 359.72459 * 29 28 27 31 31 C 1.38080 * 120.07837 * 359.97438 * 30 29 28 32 32 H 0.96999 * 120.00186 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.50765 * 296.71460 * 14 12 10 34 34 H 1.08997 * 109.51063 * 56.85392 * 14 12 10 35 35 H 1.09003 * 109.47143 * 177.63132 * 16 15 14 36 36 H 1.08993 * 109.47285 * 297.63410 * 16 15 14 37 37 H 1.08003 * 120.00177 * 0.02562 * 18 17 16 38 38 H 1.08002 * 120.00212 * 180.23576 * 19 18 17 39 39 H 1.08006 * 119.99966 * 179.83720 * 20 19 18 40 40 H 1.08001 * 120.00396 * 179.97438 * 21 20 19 41 41 H 1.07997 * 120.00137 * 359.97438 * 22 17 16 42 42 H 1.08989 * 109.50796 * 298.66038 * 23 15 14 43 43 H 1.09000 * 109.50250 * 178.52507 * 23 15 14 44 44 H 1.08990 * 109.50598 * 183.21627 * 24 23 15 45 45 H 1.09001 * 109.50808 * 63.08078 * 24 23 15 46 46 H 1.07998 * 120.03938 * 359.97438 * 27 26 9 47 47 H 1.08004 * 119.95828 * 180.30071 * 28 27 26 48 48 H 1.07994 * 119.92551 * 179.74609 * 29 28 27 49 49 H 1.07998 * 119.96338 * 180.02562 * 30 29 28 50 50 H 1.07999 * 120.04057 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.3769 2.1150 1.3934 5 1 3.6000 1.4089 -0.5779 6 1 1.5101 2.6155 -0.8154 7 6 2.0087 -1.2028 -0.0005 8 1 1.4802 -2.1314 -0.1582 9 7 3.3654 -1.2114 0.1991 10 6 4.1771 -1.7838 -0.7119 11 8 5.3650 -1.8826 -0.4886 12 6 3.6084 -2.3012 -2.0081 13 1 2.7595 -2.9522 -1.7990 14 6 3.1488 -1.1231 -2.8711 15 7 2.6676 -1.6287 -4.1651 16 6 2.1644 -0.5330 -5.0041 17 6 3.2554 0.4868 -5.2061 18 6 3.3882 1.5410 -4.3219 19 6 4.3914 2.4743 -4.5049 20 6 5.2565 2.3580 -5.5768 21 6 5.1204 1.3067 -6.4640 22 6 4.1196 0.3712 -6.2788 23 6 3.7247 -2.3799 -4.8576 24 6 4.1775 -3.5455 -3.9742 25 8 4.6133 -3.0377 -2.7102 26 6 3.9065 -0.6263 1.3475 27 6 5.2679 -0.7296 1.6064 28 6 5.7999 -0.1455 2.7388 29 6 4.9778 0.5320 3.6209 30 6 3.6215 0.6319 3.3693 31 6 3.0836 0.0556 2.2357 32 1 -0.4850 0.8400 -0.0004 33 1 2.3426 -0.5932 -2.3640 34 1 3.9853 -0.4438 -3.0349 35 1 1.8537 -0.9290 -5.9710 36 1 1.3126 -0.0617 -4.5139 37 1 2.7104 1.6336 -3.4862 38 1 4.4977 3.2959 -3.8120 39 1 6.0387 3.0887 -5.7212 40 1 5.7960 1.2160 -7.3017 41 1 4.0132 -0.4502 -6.9719 42 1 4.5708 -1.7212 -5.0531 43 1 3.3382 -2.7666 -5.8006 44 1 5.0003 -4.0710 -4.4586 45 1 3.3448 -4.2324 -3.8229 46 1 5.9097 -1.2626 0.9205 47 1 6.8587 -0.2212 2.9381 48 1 5.3960 0.9843 4.5079 49 1 2.9824 1.1620 4.0600 50 1 2.0245 0.1344 2.0396 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078098376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:21 Heat of formation + Delta-G solvation = 4.421250 kcal Electronic energy + Delta-G solvation = -34909.729435 eV Core-core repulsion = 30674.670962 eV Total energy + Delta-G solvation = -4235.058473 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.14092 -41.05043 -39.85995 -38.90888 -37.17138 -36.74396 -34.26085 -32.88965 -32.46132 -31.87820 -31.75350 -30.57499 -28.97138 -27.34761 -26.15568 -25.30874 -23.75198 -23.45522 -23.05375 -22.46960 -21.36141 -21.28134 -20.03774 -18.42073 -17.91608 -17.69920 -17.42395 -17.14836 -16.94493 -16.57718 -16.39824 -16.22041 -15.92899 -15.70182 -15.67910 -15.52993 -15.04743 -14.93189 -14.73442 -14.56849 -14.44225 -14.16674 -13.98655 -13.79601 -13.72126 -13.46720 -13.25880 -12.96223 -12.78426 -12.61828 -12.43973 -12.32815 -12.29606 -12.21432 -11.94240 -11.80672 -11.65108 -11.37381 -10.88346 -10.74786 -10.13587 -9.91184 -9.78812 -9.71009 -9.45824 -8.88880 -8.58018 -6.56040 0.30611 0.36597 0.38056 0.50915 1.13425 1.21339 1.30110 1.63775 1.95025 2.05778 2.61313 2.69228 2.90737 3.03968 3.14485 3.70280 3.75824 3.79233 3.86728 3.95794 4.01817 4.06887 4.12644 4.15695 4.16938 4.23079 4.36252 4.41490 4.45204 4.51170 4.60826 4.63951 4.68671 4.73400 4.75915 4.78114 4.82737 4.85984 4.96940 5.01427 5.04104 5.19252 5.41877 5.44319 5.50350 5.52902 5.55083 5.63382 5.69195 5.80145 5.91418 5.96958 5.98146 6.02092 6.08153 6.35303 6.77914 7.11928 7.42983 8.44444 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.004188 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.588228 B = 6684.742503 C = 7159.922610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.899 3.101 4 H -0.241 1.241 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.362 4.362 8 H 0.089 0.911 9 N -0.412 5.412 10 C 0.495 3.505 11 O -0.559 6.559 12 C 0.109 3.891 13 H 0.088 0.912 14 C 0.054 3.946 15 N -0.522 5.522 16 C 0.093 3.907 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.141 4.141 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.108 4.108 23 C 0.013 3.987 24 C 0.054 3.946 25 O -0.389 6.389 26 C 0.127 3.873 27 C -0.208 4.208 28 C -0.104 4.104 29 C -0.153 4.153 30 C -0.107 4.107 31 C -0.179 4.179 32 H 0.285 0.715 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.042 0.958 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.067 0.933 46 H 0.165 0.835 47 H 0.148 0.852 48 H 0.156 0.844 49 H 0.144 0.856 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 2.059 -10.775 12.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.165 1.165 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.489 4.489 8 H 0.106 0.894 9 N -0.123 5.123 10 C 0.286 3.714 11 O -0.441 6.441 12 C 0.048 3.952 13 H 0.105 0.895 14 C -0.075 4.075 15 N -0.245 5.245 16 C -0.034 4.034 17 C -0.130 4.130 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.115 4.115 24 C -0.022 4.022 25 O -0.308 6.308 26 C 0.032 3.968 27 C -0.228 4.228 28 C -0.123 4.123 29 C -0.171 4.171 30 C -0.126 4.126 31 C -0.199 4.199 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.060 0.940 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.085 0.915 46 H 0.181 0.819 47 H 0.165 0.835 48 H 0.173 0.827 49 H 0.161 0.839 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.477 1.677 -10.572 12.511 hybrid contribution 0.075 1.512 0.242 1.533 sum 6.551 3.189 -10.330 12.642 Atomic orbital electron populations 1.69696 1.06670 1.29422 1.45015 1.25674 0.95308 0.99741 0.92701 0.86663 0.78890 0.81657 0.80334 1.16496 1.21130 1.20624 1.18763 0.79589 0.95271 1.55234 0.89351 1.41298 1.07123 1.49219 1.14697 1.20984 0.85431 0.79584 0.85402 1.90181 1.17065 1.58755 1.78128 1.21407 0.90301 0.94176 0.89291 0.89481 1.22316 0.99212 0.95018 0.90981 1.62605 1.35325 1.23890 1.02667 1.21357 0.94425 0.88582 0.99071 1.20735 0.99747 0.96492 0.96015 1.21171 0.99130 0.96031 0.98917 1.21350 0.96054 0.99395 0.99087 1.21462 0.99033 0.99276 0.94333 1.21547 0.98349 0.94123 0.99883 1.21368 0.94693 0.99682 0.96876 1.23010 0.93608 0.95900 0.98957 1.23058 1.01607 0.95222 0.82315 1.88008 1.37796 1.71286 1.33680 1.18795 0.93524 0.96202 0.88282 1.22869 0.94558 1.04267 1.01069 1.21433 1.00887 0.96590 0.93340 1.21414 0.93090 1.01603 1.01036 1.21251 0.96476 0.98870 0.95993 1.21204 1.00324 1.01778 0.96641 0.90402 0.89683 0.95883 0.86226 0.90977 0.89101 0.86232 0.83768 0.82866 0.83269 0.94015 0.85816 0.85421 0.91500 0.81905 0.83460 0.82665 0.83866 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.00 13.96 21.65 0.30 -45.70 16 2 C 0.07 3.81 3.53 84.91 0.30 4.11 16 3 Si 0.90 42.63 23.90 68.60 1.64 44.27 16 4 H -0.24 -10.87 6.07 99.48 0.60 -10.27 16 5 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.36 -18.84 6.73 84.02 0.57 -18.27 16 8 H 0.09 4.91 7.72 -2.91 -0.02 4.89 16 9 N -0.41 -20.93 2.13 -458.89 -0.98 -21.91 16 10 C 0.49 24.65 6.95 87.66 0.61 25.26 16 11 O -0.56 -29.28 12.92 15.83 0.20 -29.07 16 12 C 0.11 4.72 2.51 29.88 0.07 4.80 16 13 H 0.09 3.82 7.49 -2.39 -0.02 3.80 16 14 C 0.05 2.17 3.98 86.31 0.34 2.51 16 15 N -0.52 -16.37 4.93 -899.78 -4.44 -20.81 16 16 C 0.09 2.51 5.58 85.56 0.48 2.99 16 17 C -0.13 -3.60 4.01 -19.87 -0.08 -3.68 16 18 C -0.13 -4.42 7.94 22.27 0.18 -4.24 16 19 C -0.14 -4.16 10.05 22.27 0.22 -3.93 16 20 C -0.12 -2.90 10.05 22.27 0.22 -2.67 16 21 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.11 -2.39 8.03 22.27 0.18 -2.21 16 23 C 0.01 0.32 5.13 86.32 0.44 0.76 16 24 C 0.05 1.48 7.01 72.02 0.50 1.98 16 25 O -0.39 -15.43 10.02 -130.12 -1.30 -16.73 16 26 C 0.13 6.21 5.15 38.22 0.20 6.41 16 27 C -0.21 -9.42 9.06 22.41 0.20 -9.21 16 28 C -0.10 -3.75 10.04 22.25 0.22 -3.53 16 29 C -0.15 -4.98 10.04 22.30 0.22 -4.75 16 30 C -0.11 -3.98 9.95 22.25 0.22 -3.76 16 31 C -0.18 -8.16 5.81 22.41 0.13 -8.03 16 32 H 0.29 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.08 3.91 5.86 -2.39 -0.01 3.89 16 34 H 0.02 1.01 6.23 -2.39 -0.01 1.00 16 35 H 0.12 2.38 8.05 -2.39 -0.02 2.36 16 36 H 0.07 2.19 8.08 -2.39 -0.02 2.17 16 37 H 0.09 3.42 8.03 -2.91 -0.02 3.39 16 38 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16 39 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 40 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.15 2.36 8.03 -2.91 -0.02 2.34 16 42 H 0.04 1.12 6.33 -2.39 -0.02 1.10 16 43 H 0.12 2.10 8.12 -2.39 -0.02 2.08 16 44 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.16 7.94 4.51 -64.06 -0.29 7.65 16 47 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 48 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 49 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 50 H 0.12 5.94 4.73 -2.91 -0.01 5.93 16 Total: -1.00 -67.20 385.84 1.46 -65.74 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: 0.58 Total: 41.98 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 5.46 Total: -17.77 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -5.12 Total: -88.42 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.10 Total: -45.80 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.64 Total: 44.27 kcal Total: -67.20 1.46 -65.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078098376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.157 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds