Wall clock time and date at job start Tue Mar 31 2020 04:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31583 * 122.23083 * 2 1 4 4 C 1.29978 * 117.13248 * 180.26813 * 3 2 1 5 5 N 1.38751 * 125.36340 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99655 * 180.02562 * 5 4 3 7 7 O 1.21641 * 120.00435 * 0.02562 * 6 5 4 8 8 C 1.47103 * 119.99783 * 180.02562 * 6 5 4 9 9 C 1.38438 * 126.88922 * 180.02562 * 8 6 5 10 10 C 1.39662 * 105.35651 * 180.02562 * 9 8 6 11 11 C 1.50706 * 126.06939 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47263 * 74.99308 * 11 10 9 13 13 C 1.52996 * 109.47138 * 194.99916 * 11 10 9 14 14 C 1.53002 * 109.46601 * 314.99493 * 11 10 9 15 15 N 1.30870 * 107.86819 * 359.97438 * 10 9 8 16 16 N 1.28445 * 110.93376 * 359.71565 * 15 10 9 17 17 H 0.97000 * 125.18832 * 180.27772 * 16 15 10 18 18 S 1.76140 * 109.27044 * 0.02562 * 4 3 2 19 19 C 1.34675 * 122.23059 * 180.28576 * 2 1 3 20 20 S 1.76202 * 125.92613 * 359.75217 * 19 2 1 21 21 C 1.76205 * 99.99711 * 180.02562 * 20 19 2 22 22 H 1.07993 * 120.00172 * 0.02562 * 21 20 19 23 23 C 1.38431 * 119.99675 * 179.97438 * 21 20 19 24 24 N 1.31808 * 119.99539 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99975 * 0.02562 * 23 21 20 26 26 H 1.48509 * 109.46924 * 90.00039 * 25 23 21 27 27 H 1.48505 * 109.46871 * 209.99545 * 25 23 21 28 28 H 1.48496 * 109.47470 * 329.99879 * 25 23 21 29 29 H 1.09001 * 109.46802 * 269.71663 * 1 2 3 30 30 H 1.09002 * 109.46827 * 29.71222 * 1 2 3 31 31 H 1.08998 * 109.46997 * 149.71773 * 1 2 3 32 32 H 0.96999 * 119.99716 * 0.02562 * 5 4 3 33 33 H 1.07999 * 127.32429 * 359.97427 * 9 8 6 34 34 H 1.09007 * 109.46792 * 60.00292 * 12 11 10 35 35 H 1.08999 * 109.46988 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47124 * 300.00181 * 12 11 10 37 37 H 1.08997 * 109.47485 * 59.99682 * 13 11 10 38 38 H 1.08999 * 109.47273 * 179.97438 * 13 11 10 39 39 H 1.09005 * 109.47358 * 299.99354 * 13 11 10 40 40 H 1.09000 * 109.47384 * 60.00064 * 14 11 10 41 41 H 1.08999 * 109.46741 * 180.02562 * 14 11 10 42 42 H 1.08997 * 109.47286 * 299.99867 * 14 11 10 43 43 H 0.97003 * 119.99419 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5034 0.9976 -0.0054 5 7 4.4038 2.0532 -0.0068 6 6 5.7291 1.8085 -0.0132 7 8 6.1360 0.6621 -0.0181 8 6 6.6838 2.9277 -0.0141 9 6 8.0654 2.8414 -0.0207 10 6 8.5185 4.1624 -0.0182 11 6 9.9587 4.6066 -0.0237 12 6 10.5492 4.4051 -1.4207 13 6 10.0373 6.0869 0.3546 14 6 10.7515 3.7784 0.9894 15 7 7.4706 4.9464 -0.0112 16 7 6.3845 4.2606 -0.0149 17 1 5.4887 4.6326 -0.0150 18 16 3.9347 -0.7102 -0.0121 19 6 2.2253 -1.1392 -0.0057 20 16 1.5697 -2.7747 -0.0077 21 6 3.0666 -3.7043 -0.0149 22 1 4.0187 -3.1947 -0.0162 23 6 3.0221 -5.0879 -0.0177 24 7 4.1418 -5.7832 -0.0235 25 14 1.3752 -5.9693 -0.0145 26 1 0.9345 -6.2000 -1.4139 27 1 1.5131 -7.2735 0.6823 28 1 0.3687 -5.1355 0.6903 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 0.8926 -0.5094 31 1 -0.3633 -0.8874 -0.5182 32 1 4.0794 2.9674 -0.0033 33 1 8.6655 1.9434 -0.0259 34 1 9.9842 4.9950 -2.1425 35 1 11.5909 4.7259 -1.4246 36 1 10.4931 3.3504 -1.6902 37 1 9.6166 6.2305 1.3498 38 1 11.0789 6.4080 0.3510 39 1 9.4724 6.6770 -0.3672 40 1 10.6955 2.7238 0.7200 41 1 11.7930 4.0999 0.9858 42 1 10.3309 3.9220 1.9847 43 1 4.1106 -6.7527 -0.0259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078393883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:58 Heat of formation + Delta-G solvation = 65.205109 kcal Electronic energy + Delta-G solvation = -26886.855371 eV Core-core repulsion = 22993.256068 eV Total energy + Delta-G solvation = -3893.599303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.093 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.95794 -40.06675 -38.67692 -37.24574 -35.05821 -32.80546 -31.51667 -31.34805 -30.36911 -27.59615 -27.51528 -27.23963 -25.95490 -25.02471 -23.22910 -22.35284 -21.21683 -20.51754 -19.08264 -18.76650 -17.93664 -17.43953 -16.23780 -16.09247 -15.93991 -15.46918 -15.27786 -15.24951 -14.67080 -14.30047 -14.21825 -14.01836 -13.96263 -13.73359 -13.27599 -12.83621 -12.57309 -12.44063 -12.29201 -12.07724 -11.92173 -11.72553 -11.62531 -11.41629 -11.37942 -11.37559 -11.29704 -11.04044 -10.77958 -10.77039 -10.19945 -10.12888 -9.57051 -9.48751 -9.42566 -9.27591 -8.94068 -8.85689 -7.97616 -6.80664 -6.60265 -4.34113 0.76207 1.39136 1.67341 2.23344 2.26836 2.47612 2.58781 2.78347 2.81041 3.07061 3.16319 3.32128 3.46458 3.98643 4.01379 4.30417 4.42112 4.43771 4.70901 4.79829 4.83843 4.96729 4.97676 5.17880 5.35403 5.37145 5.43283 5.53075 5.63042 5.63763 5.76653 5.78781 5.85193 5.90782 6.03533 6.05672 6.06818 6.16421 6.25081 6.27452 6.54845 6.74727 6.94643 7.60790 7.62512 7.70944 8.18833 8.31243 8.79014 10.47464 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.002172 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.864353 B =12887.356669 C =14380.848205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.030 3.970 3 N -0.476 5.476 4 C 0.185 3.815 5 N -0.613 5.613 6 C 0.583 3.417 7 O -0.480 6.480 8 C -0.031 4.031 9 C -0.136 4.136 10 C 0.040 3.960 11 C 0.017 3.983 12 C -0.139 4.139 13 C -0.135 4.135 14 C -0.141 4.141 15 N -0.259 5.259 16 N -0.380 5.380 17 H 0.445 0.555 18 S 0.240 5.760 19 C -0.237 4.237 20 S 0.062 5.938 21 C -0.547 4.547 22 H 0.105 0.895 23 C 0.102 3.898 24 N -0.854 5.854 25 Si 0.852 3.148 26 H -0.261 1.261 27 H -0.264 1.264 28 H -0.236 1.236 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.409 0.591 33 H 0.168 0.832 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 20.696 0.034 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 N -0.198 5.198 4 C -0.185 4.185 5 N -0.261 5.261 6 C 0.367 3.633 7 O -0.351 6.351 8 C -0.159 4.159 9 C -0.165 4.165 10 C -0.119 4.119 11 C 0.015 3.985 12 C -0.197 4.197 13 C -0.193 4.193 14 C -0.199 4.199 15 N -0.092 5.092 16 N -0.096 5.096 17 H 0.290 0.710 18 S 0.485 5.515 19 C -0.473 4.473 20 S 0.310 5.690 21 C -0.695 4.695 22 H 0.123 0.877 23 C -0.110 4.110 24 N -0.488 5.488 25 Si 0.675 3.325 26 H -0.185 1.185 27 H -0.189 1.189 28 H -0.160 1.160 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.245 0.755 33 H 0.185 0.815 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.933 20.139 0.034 21.299 hybrid contribution -0.680 -0.215 -0.003 0.713 sum 6.253 19.924 0.032 20.882 Atomic orbital electron populations 1.20152 0.87870 1.02266 1.01987 1.19099 0.96810 0.84498 1.10838 1.65842 1.02746 1.32342 1.18854 1.23809 0.89975 0.93193 1.11544 1.42124 1.04237 1.08065 1.71679 1.17004 0.80354 0.88066 0.77857 1.90882 1.76675 1.20211 1.47359 1.21296 0.95356 0.84446 1.14784 1.22058 0.91206 0.98824 1.04417 1.21946 0.94822 0.89979 1.05114 1.18934 0.86517 0.96302 0.96763 1.21886 1.00586 1.02437 0.94787 1.21773 1.01535 0.93971 1.01977 1.21903 0.99527 1.00041 0.98424 1.73091 0.92173 1.24627 1.19280 1.43632 1.08602 1.03317 1.54082 0.71042 1.86192 1.00550 0.93874 1.70883 1.28217 1.01655 1.04639 1.12795 1.82487 1.13434 0.88991 1.84116 1.22674 0.92389 0.94532 1.59912 0.87692 1.24750 0.97430 0.96236 0.92565 1.70008 1.26484 1.07752 1.44511 0.86815 0.83782 0.81431 0.80423 1.18509 1.18896 1.15979 0.91647 0.91681 0.91030 0.75465 0.81466 0.92463 0.91799 0.92024 0.92477 0.92353 0.92028 0.91862 0.91769 0.92312 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.02 36.01 0.36 -0.65 16 2 C 0.03 0.59 6.73 -83.96 -0.57 0.02 16 3 N -0.48 -8.95 10.55 -9.81 -0.10 -9.05 16 4 C 0.18 3.37 8.39 -87.31 -0.73 2.63 16 5 N -0.61 -8.43 5.39 -12.87 -0.07 -8.50 16 6 C 0.58 8.36 7.76 -12.67 -0.10 8.26 16 7 O -0.48 -8.76 14.43 5.24 0.08 -8.68 16 8 C -0.03 -0.35 7.15 -82.07 -0.59 -0.94 16 9 C -0.14 -1.50 10.13 -38.98 -0.39 -1.90 16 10 C 0.04 0.39 5.65 -82.47 -0.47 -0.07 16 11 C 0.02 0.13 0.96 -155.66 -0.15 -0.02 16 12 C -0.14 -0.96 8.46 37.16 0.31 -0.65 16 13 C -0.14 -0.95 8.04 37.16 0.30 -0.66 16 14 C -0.14 -0.97 8.20 37.16 0.30 -0.67 16 15 N -0.26 -2.61 11.48 33.64 0.39 -2.22 16 16 N -0.38 -3.40 6.85 33.47 0.23 -3.17 16 17 H 0.44 2.51 8.22 -190.45 -1.57 0.94 16 18 S 0.24 5.17 18.34 -107.50 -1.97 3.20 16 19 C -0.24 -5.21 6.67 29.47 0.20 -5.01 16 20 S 0.06 1.44 18.71 -107.50 -2.01 -0.57 16 21 C -0.55 -14.94 9.80 30.80 0.30 -14.63 16 22 H 0.11 3.07 6.21 -52.49 -0.33 2.75 16 23 C 0.10 2.78 5.49 -17.49 -0.10 2.68 16 24 N -0.85 -24.32 13.98 55.47 0.78 -23.55 16 25 Si 0.85 19.33 27.73 -169.99 -4.71 14.61 16 26 H -0.26 -5.81 7.11 56.52 0.40 -5.40 16 27 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 28 H -0.24 -5.10 6.73 56.52 0.38 -4.72 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.13 7.38 -51.93 -0.38 0.74 16 32 H 0.41 3.99 8.00 -40.82 -0.33 3.66 16 33 H 0.17 1.75 7.79 -52.49 -0.41 1.34 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.06 0.44 7.60 -51.93 -0.39 0.05 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.28 7.24 8.32 -40.82 -0.34 6.90 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -32.29 386.74 -9.67 -41.96 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.79 Total: 1.74 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.31 Total: -11.60 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 1.22 Total: -46.48 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.61 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -3.98 Total: 2.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.29 -9.67 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078393883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.167 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds