Wall clock time and date at job start Tue Mar 31 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21293 * 119.99978 * 2 1 4 4 N 1.34771 * 120.00011 * 179.97438 * 2 1 3 5 5 C 1.39931 * 120.00154 * 184.49991 * 4 2 1 6 6 C 1.38890 * 120.06968 * 325.28921 * 5 4 2 7 7 C 1.38089 * 119.93084 * 180.02562 * 6 5 4 8 8 S 1.76195 * 119.96487 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.40637 * 336.46748 * 8 7 6 10 10 O 1.42098 * 106.40554 * 203.54276 * 8 7 6 11 11 N 1.65607 * 107.21310 * 90.00707 * 8 7 6 12 12 C 1.46501 * 119.99663 * 269.99740 * 11 8 7 13 13 C 1.50704 * 109.47351 * 264.99863 * 12 11 8 14 14 H 1.08007 * 119.99748 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00284 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99974 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99759 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46658 * 90.00435 * 17 15 13 19 19 H 1.48498 * 109.47017 * 209.99999 * 17 15 13 20 20 H 1.48495 * 109.47400 * 330.00369 * 17 15 13 21 21 C 1.46494 * 120.00041 * 90.00062 * 11 8 7 22 22 C 1.52998 * 109.47321 * 264.99577 * 21 11 8 23 23 C 1.53001 * 117.50449 * 243.75203 * 22 21 11 24 24 C 1.52993 * 117.50503 * 175.08696 * 22 21 11 25 25 C 1.38305 * 120.07033 * 0.26077 * 7 6 5 26 26 C 1.38265 * 120.13672 * 359.48123 * 25 7 6 27 27 C 1.38134 * 120.07353 * 0.51977 * 26 25 7 28 28 C 1.50699 * 120.03681 * 179.72421 * 27 26 25 29 29 H 1.09000 * 109.47292 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47280 * 300.00731 * 1 2 3 31 31 H 1.09003 * 109.47052 * 60.00378 * 1 2 3 32 32 H 0.97003 * 120.00038 * 4.49552 * 4 2 1 33 33 H 1.08000 * 120.03445 * 0.04298 * 6 5 4 34 34 H 1.08997 * 109.47678 * 25.00061 * 12 11 8 35 35 H 1.08998 * 109.47110 * 145.00501 * 12 11 8 36 36 H 0.97000 * 119.99622 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47452 * 25.00053 * 21 11 8 38 38 H 1.09005 * 109.47143 * 144.99962 * 21 11 8 39 39 H 1.09005 * 115.54491 * 29.41359 * 22 21 11 40 40 H 1.09000 * 117.49676 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.50287 * 145.01794 * 23 22 21 42 42 H 1.08998 * 117.50138 * 214.98172 * 24 22 21 43 43 H 1.09002 * 117.49523 * 0.02562 * 24 22 21 44 44 H 1.08001 * 119.92935 * 179.72160 * 25 7 6 45 45 H 1.07996 * 119.96099 * 180.23339 * 26 25 7 46 46 H 1.08999 * 109.46536 * 270.01886 * 28 27 26 47 47 H 1.09003 * 109.47336 * 30.01436 * 28 27 26 48 48 H 1.08996 * 109.47428 * 150.01918 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5769 -1.1690 0.0956 6 6 4.3164 -0.1561 -0.5011 7 6 5.6940 -0.1610 -0.4060 8 16 6.6331 1.1232 -1.1632 9 8 5.8225 1.6536 -2.2028 10 8 7.9327 0.5929 -1.3848 11 7 6.8056 2.3303 -0.0426 12 6 5.8107 3.4026 0.0378 13 6 6.2771 4.5827 -0.7754 14 1 7.2201 4.5381 -1.2999 15 6 5.5000 5.7191 -0.8496 16 7 5.9068 6.7487 -1.5596 17 14 3.8686 5.7959 0.0571 18 1 4.0868 6.3347 1.4236 19 1 2.9333 6.6824 -0.6809 20 1 3.2889 4.4319 0.1495 21 6 7.9529 2.3257 0.8682 22 6 7.5552 1.6583 2.1862 23 6 7.5787 2.5204 3.4500 24 6 8.6521 1.4511 3.2324 25 6 6.3378 -1.1761 0.2781 26 6 5.6042 -2.1831 0.8777 27 6 4.2258 -2.1839 0.7862 28 6 3.4274 -3.2851 1.4348 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6981 -2.0060 -0.0649 33 1 3.8146 0.6348 -1.0388 34 1 4.8584 3.0451 -0.3540 35 1 5.6853 3.7048 1.0775 36 1 5.3599 7.5481 -1.6122 37 1 8.7751 1.7724 0.4142 38 1 8.2679 3.3513 1.0609 39 1 6.7802 0.8955 2.1117 40 1 7.8778 3.5630 3.3425 41 1 6.8194 2.3244 4.2071 42 1 8.5987 0.5521 3.8465 43 1 9.6572 1.7907 2.9819 44 1 7.4156 -1.1802 0.3473 45 1 6.1096 -2.9723 1.4144 46 1 3.2931 -4.1022 0.7260 47 1 3.9590 -3.6502 2.3136 48 1 2.4528 -2.8996 1.7339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078822635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:13 Heat of formation + Delta-G solvation = -48.699206 kcal Electronic energy + Delta-G solvation = -32584.443814 eV Core-core repulsion = 28346.692722 eV Total energy + Delta-G solvation = -4237.751092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.145 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.78590 -38.70107 -37.64020 -36.60833 -35.21291 -35.04450 -34.81179 -32.94226 -32.23257 -31.13050 -28.98557 -28.34913 -27.27687 -25.46213 -23.38919 -22.20766 -21.98593 -21.81140 -20.71902 -20.42096 -18.97004 -17.74836 -17.17500 -16.84489 -16.64992 -16.23118 -16.01160 -15.77055 -15.27924 -15.01050 -14.56384 -14.27388 -14.20468 -14.03727 -13.99682 -13.67852 -13.35684 -12.97263 -12.77683 -12.74377 -12.57531 -12.31056 -12.28994 -12.16921 -12.01644 -11.73245 -11.66232 -11.40467 -11.32526 -11.20446 -11.12478 -10.86573 -10.65921 -10.46427 -10.35319 -10.21285 -9.97291 -9.93462 -9.60523 -9.43720 -9.11425 -8.48233 -8.33129 -8.04579 -5.97981 -3.96436 0.68642 1.06633 1.21726 2.38891 2.82164 3.31117 3.37005 3.45082 3.55782 3.72405 4.06836 4.35677 4.45149 4.51494 4.53276 4.59153 4.77672 4.84648 4.94907 5.01729 5.12069 5.16441 5.17378 5.18301 5.23325 5.34316 5.35230 5.45855 5.53544 5.60873 5.63032 5.70760 5.78888 5.82722 6.02482 6.09120 6.15760 6.16929 6.18190 6.22926 6.32734 6.46627 6.60101 6.84688 6.91311 7.11628 7.20133 7.46143 7.69627 7.91865 8.59018 9.06215 9.62282 11.15306 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.007738 B = 0.004991 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.549848 B = 5608.470753 C = 7326.892505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.501 3.499 3 O -0.508 6.508 4 N -0.674 5.674 5 C 0.117 3.883 6 C -0.015 4.015 7 C -0.661 4.661 8 S 2.685 3.315 9 O -0.937 6.937 10 O -0.971 6.971 11 N -0.969 5.969 12 C 0.226 3.774 13 C -0.528 4.528 14 H 0.079 0.921 15 C 0.076 3.924 16 N -0.897 5.897 17 Si 0.863 3.137 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.255 1.255 21 C 0.149 3.851 22 C -0.173 4.173 23 C -0.175 4.175 24 C -0.179 4.179 25 C -0.031 4.031 26 C -0.127 4.127 27 C -0.067 4.067 28 C -0.119 4.119 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.409 0.591 33 H 0.157 0.843 34 H 0.039 0.961 35 H 0.032 0.968 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.141 0.859 45 H 0.133 0.867 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.107 -22.301 9.865 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.289 3.711 3 O -0.381 6.381 4 N -0.321 5.321 5 C 0.023 3.977 6 C -0.036 4.036 7 C -0.746 4.746 8 S 2.773 3.227 9 O -0.928 6.928 10 O -0.961 6.961 11 N -0.807 5.807 12 C 0.103 3.897 13 C -0.567 4.567 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.536 5.536 17 Si 0.689 3.311 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.179 1.179 21 C 0.023 3.977 22 C -0.193 4.193 23 C -0.212 4.212 24 C -0.217 4.217 25 C -0.051 4.051 26 C -0.147 4.147 27 C -0.070 4.070 28 C -0.176 4.176 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.246 0.754 33 H 0.175 0.825 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.158 0.842 45 H 0.150 0.850 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.525 -21.322 8.972 24.035 hybrid contribution -1.667 -0.607 1.086 2.080 sum -8.192 -21.928 10.058 25.478 Atomic orbital electron populations 1.21846 0.90494 1.04291 1.06038 1.21151 0.91090 0.83232 0.75644 1.90876 1.70038 1.30957 1.46251 1.43627 1.04793 1.09954 1.73746 1.17586 0.82809 0.97596 0.99720 1.21116 0.91678 0.97452 0.93371 1.31492 1.06979 1.19128 1.16956 1.02285 0.73598 0.72735 0.74104 1.93615 1.70022 1.77249 1.51873 1.93500 1.37834 1.80279 1.84499 1.57140 1.33688 1.37516 1.52333 1.19510 0.86646 0.85679 0.97834 1.21359 1.07846 0.97127 1.30353 0.90334 1.24800 0.97473 0.95410 0.94960 1.69898 1.38316 1.04832 1.40507 0.87028 0.84734 0.79392 0.79947 1.20202 1.21002 1.17893 1.20878 0.87545 1.02405 0.86873 1.22973 1.01590 1.02820 0.91888 1.23007 1.01447 0.97048 0.99719 1.22921 0.95098 1.00813 1.02863 1.20904 1.00346 0.91561 0.92317 1.20923 0.92532 0.99593 1.01611 1.19907 0.94578 0.96333 0.96152 1.20823 0.99745 0.96266 1.00716 0.90493 0.88238 0.88098 0.75420 0.82517 0.94347 0.95047 0.92656 0.89444 0.88857 0.88061 0.88274 0.89422 0.89256 0.88600 0.84161 0.84954 0.90590 0.90652 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.39 36.01 0.37 -0.81 16 2 C 0.50 6.22 7.78 -10.99 -0.09 6.13 16 3 O -0.51 -9.44 14.52 5.55 0.08 -9.36 16 4 N -0.67 -6.98 4.75 -9.86 -0.05 -7.03 16 5 C 0.12 1.59 6.29 -83.69 -0.53 1.06 16 6 C -0.02 -0.27 8.17 -39.39 -0.32 -0.59 16 7 C -0.66 -11.47 5.97 -39.61 -0.24 -11.71 16 8 S 2.69 56.50 5.65 -107.50 -0.61 55.89 16 9 O -0.94 -23.46 16.25 -57.17 -0.93 -24.39 16 10 O -0.97 -20.42 15.82 -57.17 -0.90 -21.32 16 11 N -0.97 -20.74 2.77 -115.66 -0.32 -21.06 16 12 C 0.23 5.67 4.17 -5.19 -0.02 5.64 16 13 C -0.53 -15.52 9.94 -34.44 -0.34 -15.86 16 14 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 15 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 16 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 17 Si 0.86 22.33 27.47 -169.99 -4.67 17.66 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.25 -6.56 6.54 56.52 0.37 -6.19 16 21 C 0.15 2.67 5.96 -4.05 -0.02 2.64 16 22 C -0.17 -2.59 6.01 -90.62 -0.54 -3.13 16 23 C -0.18 -2.41 10.18 -26.69 -0.27 -2.68 16 24 C -0.18 -2.16 10.25 -26.70 -0.27 -2.43 16 25 C -0.03 -0.44 9.09 -39.55 -0.36 -0.80 16 26 C -0.13 -1.43 9.70 -39.61 -0.38 -1.81 16 27 C -0.07 -0.73 5.90 -104.43 -0.62 -1.35 16 28 C -0.12 -0.77 9.47 36.01 0.34 -0.43 16 29 H 0.08 0.27 7.92 -51.93 -0.41 -0.14 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 2.43 7.69 -40.82 -0.31 2.12 16 33 H 0.16 3.18 5.76 -52.49 -0.30 2.87 16 34 H 0.04 1.01 6.67 -51.93 -0.35 0.67 16 35 H 0.03 0.75 7.54 -51.93 -0.39 0.36 16 36 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 37 H 0.09 1.46 6.91 -51.93 -0.36 1.10 16 38 H 0.09 1.72 7.84 -51.93 -0.41 1.31 16 39 H 0.10 1.52 7.71 -51.93 -0.40 1.12 16 40 H 0.10 1.40 8.03 -51.93 -0.42 0.98 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.14 1.78 7.61 -52.49 -0.40 1.38 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 48 H 0.07 0.38 7.17 -51.93 -0.37 0.01 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -39.27 408.87 -10.94 -50.21 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.09 Total: 4.72 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -3.39 Total: -23.93 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.41 Total: -55.64 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -1.75 Total: -55.08 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Atomic # 16 Polarization: 56.50 SS G_CDS: -0.61 Total: 55.89 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -39.27 -10.94 -50.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078822635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.513 kcal (2) G-P(sol) polarization free energy of solvation -39.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds