Wall clock time and date at job start Tue Mar 31 2020 05:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34871 * 126.33893 * 2 1 4 4 C 1.34543 * 107.68105 * 179.97438 * 3 2 1 5 5 C 1.47000 * 125.76345 * 180.02562 * 4 3 2 6 6 C 1.36315 * 125.96493 * 359.68377 * 5 4 3 7 7 C 1.40711 * 106.72000 * 179.88906 * 6 5 4 8 8 C 1.34870 * 107.08291 * 0.37900 * 7 6 5 9 9 O 1.34224 * 108.72933 * 359.76154 * 8 7 6 10 10 N 1.31530 * 108.47685 * 359.72970 * 4 3 2 11 11 C 1.34165 * 108.61957 * 0.43311 * 10 4 3 12 12 C 1.50700 * 126.05207 * 179.82802 * 11 10 4 13 13 C 1.50709 * 109.46798 * 269.69632 * 12 11 10 14 14 O 1.21289 * 120.00232 * 354.46372 * 13 12 11 15 15 N 1.34781 * 119.99647 * 174.47386 * 13 12 11 16 16 C 1.46494 * 119.99677 * 184.50493 * 15 13 12 17 17 C 1.50707 * 109.46947 * 269.99129 * 16 15 13 18 18 H 1.08006 * 119.99563 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47152 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47009 * 120.00294 * 21 19 17 24 24 H 1.48498 * 109.47385 * 240.00288 * 21 19 17 25 25 C 1.39924 * 119.99865 * 4.49251 * 15 13 12 26 26 C 1.38870 * 120.06833 * 66.73971 * 25 15 13 27 27 C 1.38116 * 119.93001 * 180.31795 * 26 25 15 28 28 C 1.38275 * 120.07242 * 359.92739 * 27 26 25 29 29 C 1.38284 * 120.13975 * 0.04760 * 28 27 26 30 30 C 1.38122 * 120.07227 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47512 * 270.04457 * 1 2 3 32 32 H 1.09005 * 109.46785 * 30.04419 * 1 2 3 33 33 H 1.08997 * 109.47450 * 150.03886 * 1 2 3 34 34 H 1.08007 * 126.64257 * 0.02888 * 6 5 4 35 35 H 1.08005 * 126.45569 * 180.15997 * 7 6 5 36 36 H 1.07996 * 125.63565 * 179.74862 * 8 7 6 37 37 H 1.08997 * 109.47036 * 149.69713 * 12 11 10 38 38 H 1.08996 * 109.47319 * 29.69564 * 12 11 10 39 39 H 1.08997 * 109.47527 * 29.99109 * 16 15 13 40 40 H 1.08999 * 109.47141 * 149.99721 * 16 15 13 41 41 H 0.97001 * 120.00001 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.03602 * 0.24810 * 26 25 15 43 43 H 1.08002 * 119.96191 * 179.97438 * 27 26 25 44 44 H 1.07991 * 119.93325 * 180.02562 * 28 27 26 45 45 H 1.08003 * 119.96821 * 179.97438 * 29 28 27 46 46 H 1.07994 * 120.03944 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3061 1.0864 0.0000 4 6 3.5809 0.6560 0.0006 5 6 4.7764 1.5113 0.0013 6 6 4.7856 2.8744 -0.0046 7 6 6.1359 3.2701 0.0014 8 6 6.8787 2.1444 0.0019 9 8 6.0551 1.0846 0.0020 10 7 3.5767 -0.6593 0.0068 11 6 2.3040 -1.0837 0.0007 12 6 1.8480 -2.5200 0.0009 13 6 1.6966 -2.9992 -1.4199 14 8 1.8375 -2.2220 -2.3403 15 7 1.4044 -4.2914 -1.6677 16 6 1.3545 -4.7793 -3.0481 17 6 -0.0444 -4.6220 -3.5862 18 1 -0.8187 -4.2003 -2.9623 19 6 -0.3355 -5.0154 -4.8752 20 7 0.6074 -5.5284 -5.6350 21 14 -2.0694 -4.8196 -5.5423 22 1 -2.9375 -4.2213 -4.4966 23 1 -2.0445 -3.9315 -6.7323 24 1 -2.6042 -6.1500 -5.9286 25 6 1.1491 -5.1669 -0.6065 26 6 0.0172 -4.9959 0.1796 27 6 -0.2287 -5.8577 1.2305 28 6 0.6501 -6.8910 1.4993 29 6 1.7778 -7.0643 0.7181 30 6 2.0297 -6.2056 -0.3340 31 1 -0.3634 0.0008 1.0276 32 1 -0.3633 0.8896 -0.5146 33 1 -0.3634 -0.8903 -0.5132 34 1 3.9234 3.5248 -0.0101 35 1 6.5075 4.2843 0.0015 36 1 7.9579 2.1026 0.0021 37 1 0.8896 -2.5969 0.5144 38 1 2.5861 -3.1355 0.5152 39 1 2.0469 -4.2036 -3.6623 40 1 1.6366 -5.8319 -3.0719 41 1 0.4027 -5.8048 -6.5419 42 1 -0.6696 -4.1890 -0.0298 43 1 -1.1086 -5.7249 1.8425 44 1 0.4555 -7.5638 2.3213 45 1 2.4626 -7.8720 0.9308 46 1 2.9108 -6.3412 -0.9435 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078999910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:26 Heat of formation + Delta-G solvation = 18.874188 kcal Electronic energy + Delta-G solvation = -32131.238520 eV Core-core repulsion = 27760.973678 eV Total energy + Delta-G solvation = -4370.264841 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.55909 -43.58618 -41.41641 -39.50199 -36.71879 -36.22319 -34.84410 -34.53007 -34.06925 -31.90587 -31.30912 -31.16603 -30.62967 -28.86219 -27.03782 -25.14577 -24.09591 -23.73124 -23.31781 -23.16202 -22.00566 -21.60531 -20.45781 -19.30354 -18.75719 -18.63271 -17.97063 -17.67457 -17.25565 -17.03043 -16.94071 -16.70560 -16.24603 -16.16223 -15.49537 -15.36278 -15.09508 -14.56493 -14.54173 -14.28992 -14.19957 -13.99799 -13.96951 -13.91832 -13.62872 -13.57619 -13.40097 -13.31515 -13.18438 -12.93386 -12.70627 -12.57874 -12.42480 -12.12682 -12.11023 -11.74135 -11.71175 -11.20547 -11.02681 -10.69386 -10.47993 -10.12599 -9.80038 -9.23655 -9.07312 -8.25791 -6.40768 -0.37644 0.38100 0.53190 0.70321 0.80332 1.34096 1.35628 1.36832 1.48644 1.62291 1.76114 2.18435 2.33567 2.39881 2.77286 2.89669 3.04404 3.44510 3.60158 3.67157 3.88415 3.98041 4.05236 4.11214 4.15286 4.22646 4.29060 4.35479 4.51365 4.58934 4.62346 4.64267 4.68102 4.74183 4.80638 4.87644 4.88671 4.97634 4.98335 5.05987 5.10597 5.18450 5.41006 5.41124 5.56368 5.65503 5.66873 5.76318 5.89424 5.98401 6.09470 6.46805 6.62723 6.68885 7.19031 7.33349 8.82188 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.008827 B = 0.002826 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.418433 B = 9907.134853 C =11348.988418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.015 4.015 3 O -0.184 6.184 4 C 0.240 3.760 5 C 0.011 3.989 6 C -0.142 4.142 7 C -0.216 4.216 8 C -0.003 4.003 9 O -0.177 6.177 10 N -0.482 5.482 11 C -0.015 4.015 12 C -0.039 4.039 13 C 0.512 3.488 14 O -0.575 6.575 15 N -0.561 5.561 16 C 0.267 3.733 17 C -0.535 4.535 18 H 0.058 0.942 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.282 1.282 24 H -0.270 1.270 25 C 0.122 3.878 26 C -0.134 4.134 27 C -0.099 4.099 28 C -0.120 4.120 29 C -0.105 4.105 30 C -0.145 4.145 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.174 0.826 35 H 0.195 0.805 36 H 0.256 0.744 37 H 0.143 0.857 38 H 0.112 0.888 39 H -0.004 1.004 40 H 0.020 0.980 41 H 0.267 0.733 42 H 0.125 0.875 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.149 0.851 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 10.780 21.212 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.068 4.068 3 O -0.072 6.072 4 C 0.037 3.963 5 C -0.039 4.039 6 C -0.163 4.163 7 C -0.235 4.235 8 C -0.072 4.072 9 O -0.073 6.073 10 N -0.212 5.212 11 C -0.136 4.136 12 C -0.079 4.079 13 C 0.301 3.699 14 O -0.454 6.454 15 N -0.288 5.288 16 C 0.147 3.853 17 C -0.574 4.574 18 H 0.076 0.924 19 C -0.193 4.193 20 N -0.571 5.571 21 Si 0.795 3.205 22 H -0.185 1.185 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.031 3.969 26 C -0.154 4.154 27 C -0.117 4.117 28 C -0.138 4.138 29 C -0.123 4.123 30 C -0.165 4.165 31 H 0.145 0.855 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.191 0.809 35 H 0.212 0.788 36 H 0.272 0.728 37 H 0.161 0.839 38 H 0.130 0.870 39 H 0.015 0.985 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.143 0.857 43 H 0.177 0.823 44 H 0.177 0.823 45 H 0.166 0.834 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.294 10.466 20.523 23.435 hybrid contribution -0.786 0.337 -1.528 1.751 sum 3.508 10.803 18.995 22.132 Atomic orbital electron populations 1.20593 0.80261 1.05394 1.06157 1.24028 0.96254 0.82736 1.03756 1.84398 1.15892 1.36116 1.70768 1.21741 0.82866 0.87361 1.04331 1.17737 0.80230 0.90357 1.15586 1.22302 1.00707 0.91456 1.01855 1.22217 0.91109 1.01816 1.08316 1.25428 0.97868 0.82896 1.00989 1.84128 1.14359 1.37565 1.71260 1.70609 1.23686 1.09260 1.17604 1.20969 0.88029 0.96908 1.07685 1.19931 1.05263 0.89371 0.93291 1.20964 0.75905 0.81321 0.91709 1.90667 1.51828 1.54555 1.48369 1.45752 1.67364 1.08429 1.07254 1.18820 0.96582 0.93138 0.76722 1.21620 0.95369 1.41556 0.98843 0.92369 1.25910 1.02173 0.94457 0.96788 1.70074 1.34912 1.42912 1.09153 0.85316 0.78770 0.78203 0.78246 1.18471 1.20758 1.19497 1.18051 0.95886 0.93418 0.89505 1.21443 0.95022 1.01903 0.96989 1.21387 1.00256 0.93903 0.96178 1.21569 0.93823 0.98206 1.00180 1.21314 0.98661 0.98447 0.93900 1.21382 0.99087 0.96654 0.99341 0.85543 0.88570 0.89382 0.80890 0.78828 0.72813 0.83932 0.86950 0.98543 0.96238 0.92398 0.85733 0.82301 0.82279 0.83357 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 10.03 71.23 0.71 -0.75 16 2 C -0.01 -0.46 7.38 24.83 0.18 -0.28 16 3 O -0.18 -6.01 10.80 -10.50 -0.11 -6.12 16 4 C 0.24 8.55 8.12 87.04 0.71 9.25 16 5 C 0.01 0.33 7.24 24.12 0.17 0.50 16 6 C -0.14 -3.04 10.85 22.43 0.24 -2.79 16 7 C -0.22 -3.23 10.88 22.10 0.24 -2.99 16 8 C 0.00 -0.05 12.08 67.05 0.81 0.76 16 9 O -0.18 -4.92 10.67 -6.61 -0.07 -5.00 16 10 N -0.48 -19.40 11.34 -293.48 -3.33 -22.73 16 11 C -0.01 -0.53 5.59 41.35 0.23 -0.30 16 12 C -0.04 -1.32 4.52 29.10 0.13 -1.19 16 13 C 0.51 23.44 7.53 87.66 0.66 24.10 16 14 O -0.58 -32.19 15.67 -3.06 -0.05 -32.24 16 15 N -0.56 -26.00 2.51 -635.29 -1.59 -27.60 16 16 C 0.27 15.29 5.07 85.64 0.43 15.72 16 17 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 18 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 19 C 0.01 0.32 5.46 84.65 0.46 0.78 16 20 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 21 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.12 4.49 4.42 38.15 0.17 4.66 16 26 C -0.13 -3.93 8.45 22.39 0.19 -3.74 16 27 C -0.10 -2.10 10.04 22.25 0.22 -1.88 16 28 C -0.12 -2.35 10.04 22.29 0.22 -2.13 16 29 C -0.10 -2.52 10.04 22.25 0.22 -2.30 16 30 C -0.14 -4.79 9.65 22.39 0.22 -4.58 16 31 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.09 2.11 7.77 -2.39 -0.02 2.09 16 34 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 35 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.26 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.14 3.72 6.63 -2.39 -0.02 3.71 16 38 H 0.11 3.67 8.02 -2.39 -0.02 3.65 16 39 H 0.00 -0.23 7.49 -2.39 -0.02 -0.25 16 40 H 0.02 1.15 7.83 -2.39 -0.02 1.14 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.12 3.52 7.92 -2.91 -0.02 3.50 16 43 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.16 1.91 8.06 -2.92 -0.02 1.89 16 45 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 46 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -89.96 406.39 4.65 -85.31 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.01 Total: 16.97 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 6.48 Total: 1.42 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.64 Total: -107.93 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -0.23 Total: -43.36 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -89.96 4.65 -85.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078999910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.187 kcal (2) G-P(sol) polarization free energy of solvation -89.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds