Wall clock time and date at job start Tue Mar 31 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38282 * 119.88066 * 2 1 4 4 C 1.37966 * 120.20940 * 180.02562 * 3 2 1 5 5 C 1.39609 * 119.97125 * 359.97417 * 4 3 2 6 6 C 1.47856 * 120.12199 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00444 * 150.57016 * 6 5 4 8 8 N 1.34785 * 119.99450 * 330.57338 * 6 5 4 9 9 C 1.46495 * 119.99989 * 6.33408 * 8 6 5 10 10 C 1.50700 * 109.47426 * 98.71017 * 9 8 6 11 11 H 1.08002 * 119.99765 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99835 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00286 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99499 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46888 * 90.00170 * 14 12 10 16 16 H 1.48496 * 109.46951 * 210.00181 * 14 12 10 17 17 H 1.48498 * 109.47236 * 330.00026 * 14 12 10 18 18 C 1.46501 * 119.99567 * 186.33269 * 8 6 5 19 19 C 1.53003 * 109.47166 * 94.62506 * 18 8 6 20 20 C 1.52997 * 117.49865 * 244.22431 * 19 18 8 21 21 C 1.52990 * 117.49771 * 175.56406 * 19 18 8 22 22 C 1.39488 * 119.76495 * 0.02562 * 5 4 3 23 23 C 1.38513 * 119.78864 * 359.97438 * 22 5 4 24 24 O 1.35899 * 119.98594 * 179.97438 * 23 22 5 25 25 C 1.35735 * 118.00192 * 5.74928 * 24 23 22 26 26 C 1.39285 * 120.85135 * 256.40629 * 25 24 23 27 27 C 1.37971 * 119.08629 * 179.72770 * 26 25 24 28 28 N 1.31963 * 120.82733 * 0.54591 * 27 26 25 29 29 C 1.31963 * 121.86514 * 359.72233 * 28 27 26 30 30 C 1.37962 * 120.82684 * 359.97438 * 29 28 27 31 31 H 1.09004 * 109.47156 * 90.00140 * 1 2 3 32 32 H 1.09005 * 109.47030 * 209.99661 * 1 2 3 33 33 H 1.08995 * 109.47290 * 330.00162 * 1 2 3 34 34 H 1.08005 * 119.89419 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.01700 * 179.97438 * 4 3 2 36 36 H 1.09006 * 109.47074 * 218.71125 * 9 8 6 37 37 H 1.09002 * 109.47328 * 338.70343 * 9 8 6 38 38 H 0.97003 * 120.00099 * 179.97438 * 13 12 10 39 39 H 1.09003 * 109.46931 * 214.62581 * 18 8 6 40 40 H 1.08994 * 109.47097 * 334.62105 * 18 8 6 41 41 H 1.08996 * 115.54802 * 29.88965 * 19 18 8 42 42 H 1.09009 * 117.49737 * 359.97438 * 20 19 18 43 43 H 1.09002 * 117.50084 * 145.01934 * 20 19 18 44 44 H 1.09003 * 117.49771 * 214.97798 * 21 19 18 45 45 H 1.09002 * 117.50094 * 0.02562 * 21 19 18 46 46 H 1.07999 * 120.10594 * 179.72119 * 22 5 4 47 47 H 1.08000 * 120.45396 * 359.96095 * 26 25 24 48 48 H 1.08007 * 119.58378 * 180.26428 * 27 26 25 49 49 H 1.08003 * 119.58128 * 180.02562 * 29 28 27 50 50 H 1.08004 * 120.45416 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1990 0.0000 4 6 3.5756 1.2069 -0.0005 5 6 4.2799 0.0015 -0.0005 6 6 5.7585 0.0061 -0.0017 7 8 6.3696 -0.9085 0.5155 8 7 6.4287 1.0247 -0.5762 9 6 5.6988 2.1925 -1.0756 10 6 5.7671 3.3011 -0.0570 11 1 6.3006 3.1505 0.8699 12 6 5.1486 4.5074 -0.3085 13 7 4.4987 4.6906 -1.4369 14 14 5.2340 5.8817 0.9539 15 1 6.4293 6.7224 0.6902 16 1 4.0103 6.7175 0.8591 17 1 5.3303 5.2976 2.3158 18 6 7.8871 0.9638 -0.7011 19 6 8.2584 0.4128 -2.0793 20 6 8.9936 -0.9280 -2.1295 21 6 9.7431 0.3686 -2.4459 22 6 3.5839 -1.2073 -0.0005 23 6 2.1987 -1.2037 0.0000 24 8 1.5165 -2.3791 -0.0005 25 6 2.2279 -3.5289 0.1185 26 6 2.4644 -4.3403 -0.9886 27 6 3.1970 -5.4983 -0.8272 28 7 3.6614 -5.8450 0.3584 29 6 3.4537 -5.1056 1.4314 30 6 2.7359 -3.9301 1.3519 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 1.6522 2.1322 0.0004 35 1 4.1105 2.1451 -0.0009 36 1 6.1479 2.5294 -2.0100 37 1 4.6571 1.9228 -1.2498 38 1 4.0632 5.5391 -1.6137 39 1 8.3037 1.9644 -0.5855 40 1 8.2910 0.3105 0.0723 41 1 7.5489 0.6280 -2.8783 42 1 9.2131 -1.4174 -1.1805 43 1 8.7681 -1.5948 -2.9617 44 1 10.0104 0.5543 -3.4862 45 1 10.4554 0.7316 -1.7050 46 1 4.1232 -2.1429 -0.0051 47 1 2.0829 -4.0649 -1.9607 48 1 3.3888 -6.1313 -1.6811 49 1 3.8512 -5.4243 2.3837 50 1 2.5698 -3.3293 2.2339 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079361738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:53 Heat of formation + Delta-G solvation = 48.064185 kcal Electronic energy + Delta-G solvation = -33228.422700 eV Core-core repulsion = 28995.256727 eV Total energy + Delta-G solvation = -4233.165973 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.18445 -39.89259 -39.02274 -37.42298 -36.75099 -35.05058 -32.74157 -32.64491 -31.57959 -31.44876 -29.91434 -28.14241 -27.42422 -25.83147 -24.15821 -23.73228 -23.23491 -22.13593 -21.86884 -21.63871 -20.44523 -19.36538 -18.44401 -17.03150 -16.81807 -16.60487 -16.20312 -15.93509 -15.45634 -15.40985 -15.10984 -14.64079 -14.48194 -14.43827 -14.31407 -13.97058 -13.83830 -13.66021 -13.38827 -13.18643 -13.01080 -12.86544 -12.50132 -12.28969 -11.93773 -11.87835 -11.71562 -11.44371 -11.28426 -11.14672 -11.06899 -10.97406 -10.96848 -10.39508 -10.19093 -9.91768 -9.84942 -9.76744 -9.61908 -9.57190 -9.39753 -9.12428 -8.73829 -8.52844 -7.82972 -7.79866 -6.35238 -4.45060 0.82211 0.92026 1.28229 1.72439 3.04531 3.14010 3.22208 3.25318 3.37617 3.68641 3.72636 4.13225 4.15844 4.26580 4.26852 4.66156 4.71804 4.92352 4.94502 4.95202 5.04600 5.10749 5.16135 5.21636 5.28605 5.38315 5.50095 5.50803 5.56572 5.69449 5.75764 5.76687 5.80534 5.83070 5.95536 6.00772 6.07056 6.11528 6.11910 6.22115 6.33047 6.34502 6.42284 6.48328 6.55331 6.70064 6.89798 6.92915 7.10551 7.22486 7.43684 7.57489 7.60207 7.75800 7.85803 8.24171 8.63906 8.90295 9.23458 10.69084 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.003664 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.168401 B = 7639.770560 C =10277.537002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.089 4.089 3 C -0.101 4.101 4 C -0.115 4.115 5 C -0.102 4.102 6 C 0.558 3.442 7 O -0.567 6.567 8 N -0.583 5.583 9 C 0.204 3.796 10 C -0.545 4.545 11 H 0.066 0.934 12 C 0.070 3.930 13 N -0.880 5.880 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.149 3.851 19 C -0.160 4.160 20 C -0.178 4.178 21 C -0.178 4.178 22 C -0.136 4.136 23 C 0.086 3.914 24 O -0.258 6.258 25 C 0.140 3.860 26 C -0.181 4.181 27 C 0.113 3.887 28 N -0.488 5.488 29 C 0.116 3.884 30 C -0.186 4.186 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.135 0.865 35 H 0.208 0.792 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.269 0.731 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.127 0.873 47 H 0.143 0.857 48 H 0.162 0.838 49 H 0.162 0.838 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -11.558 -0.219 12.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.089 4.089 3 C -0.119 4.119 4 C -0.132 4.132 5 C -0.105 4.105 6 C 0.347 3.653 7 O -0.448 6.448 8 N -0.312 5.312 9 C 0.085 3.915 10 C -0.584 4.584 11 H 0.084 0.916 12 C -0.135 4.135 13 N -0.517 5.517 14 Si 0.723 3.277 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.195 1.195 18 C 0.025 3.975 19 C -0.180 4.180 20 C -0.215 4.215 21 C -0.215 4.215 22 C -0.156 4.156 23 C 0.045 3.955 24 O -0.171 6.171 25 C 0.089 3.911 26 C -0.201 4.201 27 C -0.043 4.043 28 N -0.197 5.197 29 C -0.040 4.040 30 C -0.206 4.206 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.224 0.776 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.145 0.855 47 H 0.161 0.839 48 H 0.180 0.820 49 H 0.179 0.821 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.657 -12.635 -0.011 13.154 hybrid contribution -0.356 1.686 0.366 1.762 sum -4.013 -10.949 0.355 11.666 Atomic orbital electron populations 1.20653 0.90695 1.02618 1.02314 1.19429 0.96331 0.90090 1.03095 1.20998 0.94401 0.96385 1.00087 1.23515 0.94822 1.01718 0.93102 1.19739 0.93543 0.93352 1.03863 1.18220 0.86920 0.81861 0.78317 1.90663 1.69737 1.37448 1.46987 1.47986 1.06627 1.19283 1.57294 1.20393 0.94228 0.81567 0.95326 1.21452 1.35098 0.97527 1.04275 0.91613 1.24981 0.94596 0.98313 0.95617 1.69927 1.33033 1.25560 1.23174 0.86507 0.77898 0.81625 0.81695 1.20315 1.20813 1.19506 1.20873 0.81112 1.01527 0.93942 1.22774 0.94688 1.00512 0.99998 1.22992 1.04791 0.90861 1.02882 1.22900 0.94738 1.01992 1.01904 1.21142 0.92074 0.98681 1.03693 1.18528 0.89900 0.83696 1.03419 1.84219 1.33642 1.10657 1.88559 1.18972 0.92396 0.86771 0.92964 1.22362 1.00882 0.97500 0.99344 1.22698 0.92561 0.93741 0.95330 1.67700 1.20136 1.32614 0.99264 1.22689 0.93764 0.89998 0.97556 1.22563 0.99855 0.99670 0.98535 0.91260 0.91489 0.91400 0.84729 0.77587 0.94781 0.91199 0.92118 0.89754 0.90449 0.87796 0.88772 0.89504 0.89112 0.88873 0.85482 0.83899 0.82042 0.82076 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.78 36.01 0.35 -0.95 16 2 C -0.09 -1.39 5.90 -104.39 -0.62 -2.00 16 3 C -0.10 -1.73 9.67 -39.66 -0.38 -2.11 16 4 C -0.11 -2.28 7.49 -39.17 -0.29 -2.57 16 5 C -0.10 -2.06 5.59 -104.98 -0.59 -2.65 16 6 C 0.56 12.18 7.47 -12.32 -0.09 12.08 16 7 O -0.57 -13.25 16.19 5.32 0.09 -13.16 16 8 N -0.58 -12.30 2.47 -176.17 -0.43 -12.73 16 9 C 0.20 4.62 4.67 -5.20 -0.02 4.60 16 10 C -0.55 -13.20 7.53 -34.44 -0.26 -13.46 16 11 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.07 1.70 5.34 -17.82 -0.10 1.61 16 13 N -0.88 -22.20 13.29 55.43 0.74 -21.46 16 14 Si 0.90 19.22 29.54 -169.99 -5.02 14.20 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 C 0.15 2.78 5.78 -4.04 -0.02 2.76 16 19 C -0.16 -2.64 6.01 -90.63 -0.54 -3.19 16 20 C -0.18 -2.61 10.18 -26.70 -0.27 -2.88 16 21 C -0.18 -2.39 10.25 -26.70 -0.27 -2.67 16 22 C -0.14 -2.49 8.54 -39.01 -0.33 -2.83 16 23 C 0.09 1.41 6.58 -39.26 -0.26 1.16 16 24 O -0.26 -3.82 9.05 -3.10 -0.03 -3.85 16 25 C 0.14 1.90 4.34 -38.80 -0.17 1.73 16 26 C -0.18 -2.14 10.08 -39.29 -0.40 -2.53 16 27 C 0.11 1.27 11.17 -17.59 -0.20 1.07 16 28 N -0.49 -6.18 10.36 -13.33 -0.14 -6.32 16 29 C 0.12 1.37 11.17 -17.60 -0.20 1.17 16 30 C -0.19 -2.34 9.32 -39.29 -0.37 -2.71 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.79 7.52 -51.93 -0.39 0.40 16 33 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 35 H 0.21 4.60 3.03 -52.49 -0.16 4.44 16 36 H 0.03 0.82 8.13 -51.93 -0.42 0.40 16 37 H 0.07 1.62 3.98 -52.29 -0.21 1.41 16 38 H 0.27 6.47 8.31 -40.82 -0.34 6.14 16 39 H 0.08 1.56 8.11 -51.93 -0.42 1.14 16 40 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 41 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 42 H 0.09 1.42 8.03 -51.92 -0.42 1.00 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.13 2.37 6.38 -52.49 -0.33 2.03 16 47 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 48 H 0.16 1.29 8.06 -52.48 -0.42 0.86 16 49 H 0.16 1.45 8.06 -52.48 -0.42 1.02 16 50 H 0.14 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 416.43 15.07 6.28 6.28 Total: -1.00 -28.26 416.43 -10.46 -38.72 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.91 Total: 12.70 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -5.03 Total: -14.37 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.16 Total: -40.51 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.06 Total: -17.01 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -28.26 -10.46 -38.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.779 kcal (2) G-P(sol) polarization free energy of solvation -28.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds