Wall clock time and date at job start Tue Mar 31 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47146 * 120.75168 * 3 2 1 5 5 C 1.35966 * 117.00056 * 179.97438 * 4 3 2 6 6 C 1.38725 * 119.98332 * 0.25712 * 5 4 3 7 7 C 1.38085 * 120.01647 * 180.25012 * 6 5 4 8 8 C 1.38865 * 119.97920 * 359.49669 * 7 6 5 9 9 N 1.40038 * 120.01405 * 180.27777 * 8 7 6 10 10 C 1.46499 * 120.00280 * 7.26965 * 9 8 7 11 11 C 1.34780 * 119.99725 * 187.27668 * 9 8 7 12 12 O 1.21564 * 120.00152 * 6.22778 * 11 9 8 13 13 C 1.47838 * 119.99616 * 186.22754 * 11 9 8 14 14 C 1.39689 * 120.10183 * 21.33968 * 13 11 9 15 15 C 1.38034 * 120.03248 * 179.71503 * 14 13 11 16 16 C 1.38176 * 120.24881 * 0.56136 * 15 14 13 17 17 C 1.39190 * 120.20615 * 359.71901 * 16 15 14 18 18 S 1.76195 * 120.02371 * 179.97438 * 17 16 15 19 19 C 1.76191 * 100.00026 * 273.25083 * 18 17 16 20 20 H 1.08009 * 120.00149 * 5.17491 * 19 18 17 21 21 C 1.38729 * 120.00219 * 185.17350 * 19 18 17 22 22 N 1.31629 * 119.99920 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00248 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47364 * 89.99745 * 23 21 19 25 25 H 1.48505 * 109.47344 * 209.99940 * 23 21 19 26 26 H 1.48498 * 109.47179 * 329.99602 * 23 21 19 27 27 C 1.38874 * 119.95527 * 359.97438 * 17 16 15 28 28 C 1.38867 * 119.97076 * 0.24722 * 8 7 6 29 29 C 1.38083 * 119.97742 * 0.02562 * 28 8 7 30 30 H 4.38450 * 5.44421 * 180.02562 * 4 1 2 31 31 H 1.09003 * 109.47083 * 0.75256 * 3 2 1 32 32 H 1.09003 * 109.47015 * 240.75103 * 3 2 1 33 33 H 1.07998 * 119.99228 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.00996 * 179.76992 * 7 6 5 35 35 H 1.09002 * 109.46792 * 83.82191 * 10 9 8 36 36 H 1.09000 * 109.47467 * 203.82487 * 10 9 8 37 37 H 1.09005 * 109.46750 * 323.82382 * 10 9 8 38 38 H 1.08001 * 119.98168 * 359.97438 * 14 13 11 39 39 H 1.08001 * 119.87640 * 180.25312 * 15 14 13 40 40 H 1.08003 * 119.90229 * 179.69446 * 16 15 14 41 41 H 0.96992 * 120.00024 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.12214 * 180.02562 * 27 17 16 43 43 H 1.08002 * 120.00897 * 180.02562 * 28 8 7 44 44 H 1.08002 * 119.98665 * 180.02562 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.6898 -1.1579 5 6 4.4700 0.7819 -1.3107 6 6 5.3150 0.2155 -0.3675 7 6 6.6840 0.3131 -0.5194 8 6 7.2147 0.9695 -1.6220 9 7 8.6030 1.0640 -1.7797 10 6 9.4945 0.3374 -0.8721 11 6 9.1190 1.8234 -2.7664 12 8 8.3869 2.5149 -3.4473 13 6 10.5753 1.8155 -3.0205 14 6 11.3568 0.7431 -2.5840 15 6 12.7156 0.7343 -2.8273 16 6 13.3105 1.7895 -3.4921 17 6 12.5424 2.8660 -3.9264 18 16 13.3061 4.2092 -4.7731 19 6 13.7938 5.1991 -3.3995 20 1 13.6528 4.8333 -2.3931 21 6 14.3589 6.4483 -3.6107 22 7 14.5313 6.8939 -4.8372 23 14 14.8767 7.4975 -2.1545 24 1 16.2869 7.1939 -1.8021 25 1 14.7537 8.9339 -2.5106 26 1 14.0009 7.1988 -0.9930 27 6 11.1737 2.8806 -3.6918 28 6 6.3683 1.5317 -2.5685 29 6 4.9995 1.4381 -2.4122 30 1 -1.0501 0.0001 0.0003 31 1 3.0098 -1.0268 -0.0135 32 1 3.0091 0.5030 0.8967 33 1 4.9020 -0.2989 0.4876 34 1 7.3417 -0.1247 0.2169 35 1 9.6112 -0.6884 -1.2216 36 1 10.4682 0.8268 -0.8502 37 1 9.0672 0.3333 0.1307 38 1 10.8971 -0.0816 -2.0597 39 1 13.3167 -0.0980 -2.4923 40 1 14.3748 1.7792 -3.6751 41 1 14.9267 7.7672 -4.9848 42 1 10.5751 3.7143 -4.0279 43 1 6.7804 2.0420 -3.4265 44 1 4.3410 1.8749 -3.1485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079472282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:50 Heat of formation + Delta-G solvation = 83.395143 kcal Electronic energy + Delta-G solvation = -28154.246079 eV Core-core repulsion = 24131.813285 eV Total energy + Delta-G solvation = -4022.432794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.103 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23659 -40.07194 -38.41454 -37.37549 -35.75736 -33.80834 -32.54281 -31.50521 -31.28014 -30.73019 -29.24347 -27.73854 -27.43437 -25.60829 -24.04187 -23.21365 -22.17619 -21.86218 -20.15006 -18.95202 -18.60058 -18.00768 -17.44190 -17.07660 -16.53066 -16.37643 -15.88491 -15.82254 -15.36788 -14.90186 -14.88350 -14.41609 -14.17930 -14.04645 -13.54367 -13.48782 -13.39451 -13.28930 -13.10825 -13.07305 -12.77891 -12.55563 -12.35591 -11.95141 -11.43464 -11.25826 -11.20337 -11.14798 -11.11077 -10.94959 -10.71265 -10.67702 -9.96512 -9.94167 -9.48378 -9.22663 -9.16232 -9.03775 -8.72086 -8.05858 -7.72619 -6.75269 -6.31997 -4.06613 0.89420 1.16130 1.34856 1.58040 1.87487 2.28183 2.59248 2.81357 3.15136 3.18703 3.25003 3.26437 3.41199 3.64369 3.93793 3.97665 4.19203 4.29656 4.48362 4.61679 4.68031 4.72568 4.78611 4.98373 5.04062 5.06930 5.09846 5.17915 5.21116 5.33387 5.37595 5.40742 5.43613 5.62196 5.75174 5.80786 5.84404 5.88199 6.07201 6.09073 6.17701 6.33890 6.48766 6.56143 6.81871 6.84798 7.02537 7.08357 7.14458 7.17111 7.53391 7.99938 8.28402 9.13602 10.74711 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.001770 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.483876 B =15818.172838 C =16519.100568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.200 4.200 3 C 0.173 3.827 4 O -0.312 6.312 5 C 0.099 3.901 6 C -0.185 4.185 7 C -0.123 4.123 8 C 0.126 3.874 9 N -0.552 5.552 10 C 0.053 3.947 11 C 0.566 3.434 12 O -0.510 6.510 13 C -0.157 4.157 14 C -0.111 4.111 15 C -0.142 4.142 16 C -0.052 4.052 17 C -0.107 4.107 18 S -0.033 6.033 19 C -0.522 4.522 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.869 5.869 23 Si 0.921 3.079 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.271 1.271 27 C -0.015 4.015 28 C -0.121 4.121 29 C -0.122 4.122 30 H 0.225 0.775 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.270 0.730 42 H 0.139 0.861 43 H 0.185 0.815 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.718 -18.426 11.736 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.200 4.200 3 C 0.098 3.902 4 O -0.226 6.226 5 C 0.053 3.947 6 C -0.204 4.204 7 C -0.144 4.144 8 C 0.032 3.968 9 N -0.274 5.274 10 C -0.089 4.089 11 C 0.359 3.641 12 O -0.387 6.387 13 C -0.162 4.162 14 C -0.130 4.130 15 C -0.162 4.162 16 C -0.073 4.073 17 C -0.217 4.217 18 S 0.201 5.799 19 C -0.669 4.669 20 H 0.094 0.906 21 C -0.135 4.135 22 N -0.504 5.504 23 Si 0.747 3.253 24 H -0.201 1.201 25 H -0.206 1.206 26 H -0.196 1.196 27 C -0.037 4.037 28 C -0.140 4.140 29 C -0.141 4.141 30 H 0.241 0.759 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.157 0.843 43 H 0.201 0.799 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.916 -17.582 9.970 27.009 hybrid contribution 0.044 0.176 2.610 2.616 sum -17.871 -17.406 12.580 27.939 Atomic orbital electron populations 1.25033 0.95890 0.99339 0.97535 1.22322 0.93614 1.01592 1.02441 1.19233 0.84868 0.97589 0.88461 1.86120 1.19694 1.73249 1.43588 1.18968 0.81395 0.98287 0.96008 1.20925 0.93430 1.05438 1.00613 1.20589 0.94809 1.02058 0.96918 1.17910 0.82263 1.00621 0.96050 1.45230 1.04431 1.46631 1.31129 1.22734 0.95713 0.96789 0.93664 1.18652 0.88517 0.77963 0.78967 1.90474 1.59661 1.40283 1.48313 1.19670 0.91392 0.98645 1.06461 1.22047 0.94441 0.97977 0.98485 1.21114 0.94594 0.99262 1.01213 1.22046 1.00321 0.91877 0.93039 1.22863 0.95499 1.01338 1.02019 1.83667 1.70852 1.14340 1.11058 1.22826 1.47281 1.03966 0.92852 0.90640 1.25000 0.95087 0.96577 0.96871 1.69983 1.41360 1.19463 1.19594 0.86123 0.78984 0.78959 0.81261 1.20146 1.20624 1.19612 1.21916 0.94333 0.95918 0.91536 1.22437 0.91496 0.99293 1.00770 1.20492 0.94923 1.01511 0.97173 0.75872 0.89640 0.89622 0.85242 0.85219 0.91006 0.87714 0.90595 0.84105 0.85705 0.85006 0.92008 0.84347 0.79873 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 19.25 29.55 0.57 -0.52 16 2 C -0.20 -1.69 13.73 -37.12 -0.51 -2.20 16 3 C 0.17 1.32 5.21 34.37 0.18 1.50 16 4 O -0.31 -3.39 10.10 -19.63 -0.20 -3.59 16 5 C 0.10 1.09 6.69 -39.22 -0.26 0.83 16 6 C -0.18 -1.71 9.03 -39.46 -0.36 -2.06 16 7 C -0.12 -1.20 9.25 -39.41 -0.36 -1.57 16 8 C 0.13 1.57 6.49 -83.64 -0.54 1.03 16 9 N -0.55 -6.87 3.10 -121.84 -0.38 -7.25 16 10 C 0.05 0.43 8.14 59.85 0.49 0.92 16 11 C 0.57 8.91 7.43 -12.33 -0.09 8.82 16 12 O -0.51 -9.31 13.05 5.31 0.07 -9.24 16 13 C -0.16 -2.51 5.56 -105.00 -0.58 -3.10 16 14 C -0.11 -1.42 7.57 -39.11 -0.30 -1.72 16 15 C -0.14 -1.90 10.02 -39.68 -0.40 -2.30 16 16 C -0.05 -0.89 9.79 -39.25 -0.38 -1.27 16 17 C -0.11 -2.20 5.45 -38.99 -0.21 -2.41 16 18 S -0.03 -0.85 21.41 -107.50 -2.30 -3.15 16 19 C -0.52 -14.40 9.46 30.91 0.29 -14.11 16 20 H 0.08 2.05 7.79 -52.48 -0.41 1.64 16 21 C 0.07 2.04 5.49 -17.46 -0.10 1.94 16 22 N -0.87 -25.08 13.22 55.49 0.73 -24.35 16 23 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.02 -0.30 9.34 -38.91 -0.36 -0.66 16 28 C -0.12 -1.65 8.97 -39.41 -0.35 -2.00 16 29 C -0.12 -1.49 9.98 -39.46 -0.39 -1.88 16 30 H 0.22 0.65 7.80 -54.09 -0.42 0.23 16 31 H 0.09 0.49 7.65 -51.93 -0.40 0.09 16 32 H 0.09 0.51 7.67 -51.93 -0.40 0.11 16 33 H 0.13 0.80 6.29 -52.49 -0.33 0.47 16 34 H 0.13 0.91 6.14 -52.49 -0.32 0.59 16 35 H 0.07 0.44 7.17 -51.93 -0.37 0.07 16 36 H 0.10 0.92 5.00 -51.93 -0.26 0.66 16 37 H 0.08 0.47 6.27 -51.93 -0.33 0.15 16 38 H 0.14 1.28 4.15 -52.49 -0.22 1.06 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.14 2.87 7.80 -52.49 -0.41 2.46 16 43 H 0.19 2.85 4.70 -55.26 -0.26 2.59 16 44 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -33.70 389.53 -9.44 -43.13 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.53 Total: 3.30 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -3.68 Total: -20.76 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.36 Total: -31.59 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.13 Total: -12.83 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.30 Total: -3.15 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.70 -9.44 -43.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079472282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.528 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds