Wall clock time and date at job start Tue Mar 31 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47146 * 120.75168 * 3 2 1 5 5 C 1.35966 * 117.00056 * 179.97438 * 4 3 2 6 6 C 1.38725 * 119.98332 * 0.25712 * 5 4 3 7 7 C 1.38085 * 120.01647 * 180.25012 * 6 5 4 8 8 C 1.38865 * 119.97920 * 359.49669 * 7 6 5 9 9 N 1.40038 * 120.01405 * 180.27777 * 8 7 6 10 10 C 1.46499 * 120.00280 * 7.26965 * 9 8 7 11 11 C 1.34780 * 119.99725 * 187.27668 * 9 8 7 12 12 O 1.21564 * 120.00152 * 6.22778 * 11 9 8 13 13 C 1.47838 * 119.99616 * 186.22754 * 11 9 8 14 14 C 1.39689 * 120.10183 * 21.33968 * 13 11 9 15 15 C 1.38034 * 120.03248 * 179.71503 * 14 13 11 16 16 C 1.38176 * 120.24881 * 0.56136 * 15 14 13 17 17 C 1.39190 * 120.20615 * 359.71901 * 16 15 14 18 18 S 1.76195 * 120.02371 * 179.97438 * 17 16 15 19 19 C 1.76191 * 100.00026 * 273.25083 * 18 17 16 20 20 H 1.08009 * 120.00149 * 5.17491 * 19 18 17 21 21 C 1.38729 * 120.00219 * 185.17350 * 19 18 17 22 22 N 1.31629 * 119.99920 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00248 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47364 * 89.99745 * 23 21 19 25 25 H 1.48505 * 109.47344 * 209.99940 * 23 21 19 26 26 H 1.48498 * 109.47179 * 329.99602 * 23 21 19 27 27 C 1.38874 * 119.95527 * 359.97438 * 17 16 15 28 28 C 1.38867 * 119.97076 * 0.24722 * 8 7 6 29 29 C 1.38083 * 119.97742 * 0.02562 * 28 8 7 30 30 H 4.38450 * 5.44421 * 180.02562 * 4 1 2 31 31 H 1.09003 * 109.47083 * 0.75256 * 3 2 1 32 32 H 1.09003 * 109.47015 * 240.75103 * 3 2 1 33 33 H 1.07998 * 119.99228 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.00996 * 179.76992 * 7 6 5 35 35 H 1.09002 * 109.46792 * 83.82191 * 10 9 8 36 36 H 1.09000 * 109.47467 * 203.82487 * 10 9 8 37 37 H 1.09005 * 109.46750 * 323.82382 * 10 9 8 38 38 H 1.08001 * 119.98168 * 359.97438 * 14 13 11 39 39 H 1.08001 * 119.87640 * 180.25312 * 15 14 13 40 40 H 1.08003 * 119.90229 * 179.69446 * 16 15 14 41 41 H 0.96992 * 120.00024 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.12214 * 180.02562 * 27 17 16 43 43 H 1.08002 * 120.00897 * 180.02562 * 28 8 7 44 44 H 1.08002 * 119.98665 * 180.02562 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.6898 -1.1579 5 6 4.4700 0.7819 -1.3107 6 6 5.3150 0.2155 -0.3675 7 6 6.6840 0.3131 -0.5194 8 6 7.2147 0.9695 -1.6220 9 7 8.6030 1.0640 -1.7797 10 6 9.4945 0.3374 -0.8721 11 6 9.1190 1.8234 -2.7664 12 8 8.3869 2.5149 -3.4473 13 6 10.5753 1.8155 -3.0205 14 6 11.3568 0.7431 -2.5840 15 6 12.7156 0.7343 -2.8273 16 6 13.3105 1.7895 -3.4921 17 6 12.5424 2.8660 -3.9264 18 16 13.3061 4.2092 -4.7731 19 6 13.7938 5.1991 -3.3995 20 1 13.6528 4.8333 -2.3931 21 6 14.3589 6.4483 -3.6107 22 7 14.5313 6.8939 -4.8372 23 14 14.8767 7.4975 -2.1545 24 1 16.2869 7.1939 -1.8021 25 1 14.7537 8.9339 -2.5106 26 1 14.0009 7.1988 -0.9930 27 6 11.1737 2.8806 -3.6918 28 6 6.3683 1.5317 -2.5685 29 6 4.9995 1.4381 -2.4122 30 1 -1.0501 0.0001 0.0003 31 1 3.0098 -1.0268 -0.0135 32 1 3.0091 0.5030 0.8967 33 1 4.9020 -0.2989 0.4876 34 1 7.3417 -0.1247 0.2169 35 1 9.6112 -0.6884 -1.2216 36 1 10.4682 0.8268 -0.8502 37 1 9.0672 0.3333 0.1307 38 1 10.8971 -0.0816 -2.0597 39 1 13.3167 -0.0980 -2.4923 40 1 14.3748 1.7792 -3.6751 41 1 14.9267 7.7672 -4.9848 42 1 10.5751 3.7143 -4.0279 43 1 6.7804 2.0420 -3.4265 44 1 4.3410 1.8749 -3.1485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079472282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:49 Heat of formation + Delta-G solvation = 64.056565 kcal Electronic energy + Delta-G solvation = -28155.084663 eV Core-core repulsion = 24131.813285 eV Total energy + Delta-G solvation = -4023.271377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.103 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25088 -40.93391 -39.55752 -38.39547 -36.70479 -34.65233 -34.37097 -32.64905 -32.14115 -31.99442 -30.12159 -28.38342 -28.26797 -27.73839 -25.14799 -24.22091 -23.29487 -22.86076 -21.24656 -19.93517 -19.50363 -19.31929 -18.40428 -18.35288 -17.60620 -17.05982 -16.93320 -16.84670 -16.67405 -16.55782 -15.95091 -15.50542 -15.43382 -14.97363 -14.85901 -14.61806 -14.38895 -14.26945 -14.00231 -13.87818 -13.81357 -13.65602 -13.55256 -13.15477 -12.96467 -12.84389 -12.69924 -12.49206 -12.13735 -12.12334 -11.63878 -11.58168 -11.27472 -11.23747 -10.80040 -10.78211 -10.52707 -10.04662 -9.98304 -9.65409 -8.81402 -8.60153 -8.39044 -6.19694 -0.29579 0.22004 0.32306 0.40135 1.27870 1.29604 1.37658 1.46218 1.56821 1.63965 1.75509 1.78367 2.23707 2.65750 2.68925 2.82047 2.94064 3.25214 3.41925 3.44170 3.77088 3.89426 3.93088 3.96852 4.09130 4.15624 4.29447 4.31742 4.32533 4.38210 4.47851 4.50346 4.55035 4.66201 4.79615 4.89008 4.93243 4.94364 5.08345 5.11346 5.27126 5.28411 5.29884 5.38156 5.45517 5.49990 5.84279 5.90647 6.15643 6.18058 6.39025 6.52569 6.89483 7.01077 8.68014 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.001770 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.483876 B =15818.172838 C =16519.100568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.246 4.246 3 C 0.165 3.835 4 O -0.333 6.333 5 C 0.098 3.902 6 C -0.175 4.175 7 C -0.106 4.106 8 C 0.103 3.897 9 N -0.542 5.542 10 C 0.035 3.965 11 C 0.556 3.444 12 O -0.553 6.553 13 C -0.157 4.157 14 C -0.082 4.082 15 C -0.120 4.120 16 C -0.061 4.061 17 C -0.129 4.129 18 S -0.099 6.099 19 C -0.535 4.535 20 H 0.070 0.930 21 C 0.019 3.981 22 N -0.907 5.907 23 Si 0.993 3.007 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.267 1.267 27 C -0.041 4.041 28 C -0.145 4.145 29 C -0.142 4.142 30 H 0.255 0.745 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.195 0.805 39 H 0.179 0.821 40 H 0.133 0.867 41 H 0.273 0.727 42 H 0.103 0.897 43 H 0.155 0.845 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.321 -22.415 16.452 33.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.246 4.246 3 C 0.092 3.908 4 O -0.248 6.248 5 C 0.052 3.948 6 C -0.194 4.194 7 C -0.126 4.126 8 C 0.009 3.991 9 N -0.264 5.264 10 C -0.104 4.104 11 C 0.349 3.651 12 O -0.433 6.433 13 C -0.162 4.162 14 C -0.100 4.100 15 C -0.139 4.139 16 C -0.082 4.082 17 C -0.240 4.240 18 S 0.135 5.865 19 C -0.682 4.682 20 H 0.089 0.911 21 C -0.186 4.186 22 N -0.543 5.543 23 Si 0.815 3.185 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.191 1.191 27 C -0.063 4.063 28 C -0.165 4.165 29 C -0.161 4.161 30 H 0.271 0.729 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.186 0.814 34 H 0.188 0.812 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.211 0.789 39 H 0.196 0.804 40 H 0.151 0.849 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.171 0.829 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.526 -21.614 14.713 32.045 hybrid contribution -0.037 1.222 1.219 1.726 sum -18.563 -20.393 15.933 31.848 Atomic orbital electron populations 1.25929 0.96865 0.97831 0.95836 1.22867 0.94631 1.03098 1.04032 1.19558 0.84760 0.98668 0.87845 1.86088 1.19508 1.73820 1.45370 1.19034 0.82020 0.97870 0.95848 1.21360 0.93050 1.04160 1.00792 1.20985 0.95486 1.00117 0.95987 1.18096 0.82071 1.01875 0.97039 1.45242 1.05068 1.45709 1.30359 1.23143 0.94939 0.97812 0.94517 1.18707 0.88178 0.78483 0.79778 1.90497 1.60404 1.42243 1.50172 1.19751 0.92124 0.98490 1.05798 1.22672 0.93965 0.97435 0.95917 1.21619 0.95114 0.98749 0.98461 1.22133 1.00352 0.92075 0.93636 1.22473 0.95928 1.00815 1.04801 1.83588 1.71994 1.17560 1.13350 1.23074 1.47319 1.04832 0.93015 0.91138 1.26025 0.94899 0.97819 0.99892 1.70118 1.42336 1.19999 1.21865 0.85030 0.79077 0.76997 0.77418 1.18620 1.19980 1.19123 1.21579 0.93833 0.96914 0.94005 1.22197 0.92498 1.00708 1.01064 1.20469 0.94517 1.02776 0.98342 0.72877 0.87476 0.87803 0.81353 0.81247 0.87456 0.88035 0.87562 0.78887 0.80371 0.84891 0.91751 0.87920 0.82860 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 19.25 74.32 1.43 -0.27 16 2 C -0.25 -3.74 13.73 31.13 0.43 -3.31 16 3 C 0.17 2.12 5.21 70.18 0.37 2.49 16 4 O -0.33 -6.87 10.10 -93.17 -0.94 -7.82 16 5 C 0.10 2.04 6.69 22.50 0.15 2.19 16 6 C -0.17 -2.55 9.03 22.35 0.20 -2.35 16 7 C -0.11 -1.61 9.25 22.38 0.21 -1.40 16 8 C 0.10 2.41 6.49 38.13 0.25 2.65 16 9 N -0.54 -12.30 3.10 -657.67 -2.04 -14.34 16 10 C 0.04 0.38 8.14 127.77 1.04 1.42 16 11 C 0.56 17.78 7.43 86.78 0.64 18.42 16 12 O -0.55 -22.04 13.05 -3.92 -0.05 -22.09 16 13 C -0.16 -4.99 5.56 -20.11 -0.11 -5.10 16 14 C -0.08 -1.78 7.57 22.57 0.17 -1.61 16 15 C -0.12 -2.71 10.02 22.21 0.22 -2.49 16 16 C -0.06 -2.07 9.79 22.48 0.22 -1.85 16 17 C -0.13 -5.62 5.45 22.65 0.12 -5.49 16 18 S -0.10 -5.43 21.41 -56.49 -1.21 -6.64 16 19 C -0.54 -31.04 9.46 67.94 0.64 -30.40 16 20 H 0.07 3.99 7.79 -2.91 -0.02 3.97 16 21 C 0.02 1.07 5.49 84.84 0.47 1.54 16 22 N -0.91 -54.67 13.22 21.64 0.29 -54.38 16 23 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C -0.04 -1.73 9.34 22.70 0.21 -1.52 16 28 C -0.15 -4.17 8.97 22.38 0.20 -3.97 16 29 C -0.14 -3.64 9.98 22.35 0.22 -3.42 16 30 H 0.26 0.76 7.80 -4.41 -0.03 0.73 16 31 H 0.11 0.85 7.65 -2.39 -0.02 0.83 16 32 H 0.10 0.90 7.67 -2.39 -0.02 0.88 16 33 H 0.17 1.12 6.29 -2.91 -0.02 1.11 16 34 H 0.17 1.19 6.14 -2.91 -0.02 1.17 16 35 H 0.11 0.50 7.17 -2.39 -0.02 0.48 16 36 H 0.10 1.21 5.00 -2.39 -0.01 1.20 16 37 H 0.11 0.60 6.27 -2.38 -0.01 0.58 16 38 H 0.19 2.19 4.15 -2.91 -0.01 2.18 16 39 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.10 4.86 7.80 -2.91 -0.02 4.84 16 43 H 0.15 5.37 4.70 -46.92 -0.22 5.15 16 44 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -84.34 389.53 6.01 -78.33 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.85 Total: 15.28 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 7.09 Total: -34.46 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -1.75 Total: -68.72 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.99 Total: -29.91 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -1.21 Total: -6.64 kcal Total: -84.34 6.01 -78.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079472282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.386 kcal (2) G-P(sol) polarization free energy of solvation -84.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds