Wall clock time and date at job start Tue Mar 31 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38341 * 119.86185 * 2 1 4 4 C 1.37947 * 120.17493 * 179.72103 * 3 2 1 5 5 C 1.39599 * 119.90055 * 0.27253 * 4 3 2 6 6 C 1.47854 * 120.12963 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00392 * 310.63157 * 6 5 4 8 8 N 1.34781 * 119.99502 * 130.63387 * 6 5 4 9 9 C 1.47083 * 120.87865 * 183.51209 * 8 6 5 10 10 C 1.53693 * 108.27659 * 128.74974 * 9 8 6 11 11 N 1.46904 * 109.25521 * 54.08181 * 10 9 8 12 12 C 1.46904 * 110.99565 * 172.60495 * 11 10 9 13 13 C 1.52999 * 109.47114 * 294.30031 * 12 11 10 14 14 C 1.53008 * 109.46900 * 180.02562 * 13 12 11 15 15 S 1.80996 * 109.47021 * 179.97438 * 14 13 12 16 16 C 1.76198 * 99.99929 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00189 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99975 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99781 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99988 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47073 * 59.99745 * 20 18 16 22 22 H 1.48496 * 109.47203 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47224 * 299.99974 * 20 18 16 24 24 C 1.46898 * 111.26848 * 296.75023 * 11 10 9 25 25 C 1.47081 * 120.88246 * 3.78179 * 8 6 5 26 26 C 1.39533 * 119.73552 * 0.02562 * 5 4 3 27 27 C 1.38210 * 119.82633 * 359.97438 * 26 5 4 28 28 F 1.35099 * 119.95406 * 180.02562 * 27 26 5 29 29 H 1.09007 * 109.46816 * 90.00211 * 1 2 3 30 30 H 1.08996 * 109.46790 * 209.99794 * 1 2 3 31 31 H 1.08998 * 109.47382 * 330.00499 * 1 2 3 32 32 H 1.08002 * 119.92047 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.05380 * 180.29674 * 4 3 2 34 34 H 1.08997 * 109.62251 * 248.51922 * 9 8 6 35 35 H 1.08991 * 109.62864 * 9.09552 * 9 8 6 36 36 H 1.08992 * 109.64925 * 294.07895 * 10 9 8 37 37 H 1.08998 * 109.42051 * 173.94366 * 10 9 8 38 38 H 1.08998 * 109.47448 * 54.30264 * 12 11 10 39 39 H 1.09005 * 109.46863 * 174.29714 * 12 11 10 40 40 H 1.09004 * 109.46984 * 299.99700 * 13 12 11 41 41 H 1.08997 * 109.47165 * 60.00615 * 13 12 11 42 42 H 1.09003 * 109.46832 * 300.00057 * 14 13 12 43 43 H 1.08997 * 109.46961 * 60.00181 * 14 13 12 44 44 H 0.97000 * 119.99583 * 180.02562 * 19 18 16 45 45 H 1.08991 * 109.49367 * 303.14948 * 24 11 10 46 46 H 1.09000 * 109.49311 * 183.06371 * 24 11 10 47 47 H 1.09000 * 109.63073 * 350.90165 * 25 8 6 48 48 H 1.08999 * 109.62610 * 111.47814 * 25 8 6 49 49 H 1.07996 * 120.08637 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1997 0.0000 4 6 3.5753 1.2073 0.0058 5 6 4.2778 0.0009 0.0059 6 6 5.7563 0.0031 0.0127 7 8 6.3668 0.6915 -0.7816 8 7 6.4272 -0.7583 0.8997 9 6 7.8954 -0.7132 0.9750 10 6 8.2959 -0.4791 2.4403 11 7 7.6622 -1.5005 3.2848 12 6 8.1558 -1.4216 4.6662 13 6 9.6422 -1.7831 4.6981 14 6 10.1561 -1.7015 6.1369 15 16 11.9143 -2.1298 6.1748 16 6 12.2336 -1.9596 7.8992 17 1 11.4387 -1.6672 8.5693 18 6 13.5068 -2.2014 8.3965 19 7 14.4754 -2.5583 7.5798 20 14 13.8454 -2.0203 10.2245 21 1 12.9797 -2.9582 10.9836 22 1 15.2713 -2.3329 10.4971 23 1 13.5543 -0.6265 10.6462 24 6 6.1977 -1.3937 3.2422 25 6 5.7109 -1.6608 1.8139 26 6 3.5791 -1.2068 -0.0003 27 6 2.1970 -1.2014 -0.0061 28 9 1.5179 -2.3693 -0.0117 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6523 2.1330 -0.0004 33 1 4.1110 2.1450 0.0106 34 1 8.3090 -1.6592 0.6258 35 1 8.2687 0.1033 0.3571 36 1 7.9660 0.5103 2.7568 37 1 9.3794 -0.5495 2.5355 38 1 8.0203 -0.4079 5.0432 39 1 7.5987 -2.1193 5.2915 40 1 9.7777 -2.7969 4.3212 41 1 10.1993 -1.0854 4.0728 42 1 10.0204 -0.6879 6.5142 43 1 9.5990 -2.3995 6.7618 44 1 15.3650 -2.7276 7.9274 45 1 5.8972 -0.3915 3.5475 46 1 5.7597 -2.1273 3.9189 47 1 4.6394 -1.4710 1.7509 48 1 5.9186 -2.6961 1.5438 49 1 4.1168 -2.1434 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080631457.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:07 Heat of formation + Delta-G solvation = -53.015894 kcal Electronic energy + Delta-G solvation = -29566.711291 eV Core-core repulsion = 25341.145803 eV Total energy + Delta-G solvation = -4225.565488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.152 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.41762 -40.99261 -39.26406 -38.22075 -35.56180 -33.69936 -32.59079 -32.39607 -31.55013 -31.05616 -28.65200 -27.48502 -25.68407 -24.62047 -24.26901 -23.46472 -22.84082 -21.53861 -20.77430 -19.77324 -18.21415 -17.46042 -17.37976 -16.68534 -16.37211 -16.20170 -16.03048 -15.64544 -15.52563 -15.19347 -14.88351 -14.80731 -14.64807 -14.25892 -14.06152 -13.98293 -13.91211 -13.77682 -13.35266 -13.03542 -12.88741 -12.80196 -12.33941 -12.25765 -12.03783 -11.97550 -11.89646 -11.69507 -11.57375 -11.42429 -11.19027 -11.05163 -10.80080 -10.65409 -10.39666 -10.21294 -9.58954 -9.47574 -9.24461 -9.07935 -9.05471 -8.45633 -8.31220 -6.53322 -6.23104 -3.93487 0.26556 0.57227 2.20655 2.50017 2.98628 3.20546 3.22596 3.27342 3.48012 3.60491 3.78346 3.92454 4.11286 4.21109 4.22234 4.41941 4.53148 4.62222 4.67802 4.78532 4.90755 4.95838 4.99838 5.02111 5.06122 5.12765 5.16415 5.28769 5.32161 5.37372 5.38936 5.41449 5.47631 5.49687 5.54552 5.59856 5.67707 5.68590 5.72315 5.76571 5.89060 6.00966 6.09946 6.22663 6.30735 6.54875 6.68935 6.85819 6.90436 7.01666 7.59673 7.70483 8.35805 9.23029 10.84989 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.022341 B = 0.001479 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.017700 B =18933.196505 C =19441.695956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C -0.095 4.095 4 C -0.075 4.075 5 C -0.101 4.101 6 C 0.561 3.439 7 O -0.530 6.530 8 N -0.604 5.604 9 C 0.117 3.883 10 C 0.037 3.963 11 N -0.537 5.537 12 C 0.061 3.939 13 C -0.094 4.094 14 C -0.113 4.113 15 S -0.131 6.131 16 C -0.518 4.518 17 H 0.071 0.929 18 C 0.071 3.929 19 N -0.869 5.869 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.041 3.959 25 C 0.101 3.899 26 C -0.123 4.123 27 C 0.094 3.906 28 F -0.133 7.133 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.099 0.901 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.268 0.732 45 H 0.038 0.962 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.985 5.244 -16.383 33.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.101 4.101 3 C -0.113 4.113 4 C -0.094 4.094 5 C -0.104 4.104 6 C 0.349 3.651 7 O -0.408 6.408 8 N -0.337 5.337 9 C -0.005 4.005 10 C -0.092 4.092 11 N -0.261 5.261 12 C -0.068 4.068 13 C -0.133 4.133 14 C -0.262 4.262 15 S 0.097 5.903 16 C -0.666 4.666 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.505 5.505 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.088 4.088 25 C -0.022 4.022 26 C -0.142 4.142 27 C 0.074 3.926 28 F -0.112 7.112 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -27.632 4.756 -17.842 33.234 hybrid contribution -0.861 0.917 2.624 2.910 sum -28.493 5.673 -15.219 32.797 Atomic orbital electron populations 1.20807 0.89692 1.03784 1.03229 1.20167 0.97442 0.91878 1.00614 1.20925 0.93594 0.97423 0.99393 1.21228 0.93944 0.97436 0.96807 1.19695 0.93277 0.93700 1.03765 1.18237 0.86712 0.79439 0.80724 1.90816 1.69184 1.42117 1.38633 1.48137 1.07805 1.41691 1.36063 1.21916 0.78199 1.03774 0.96625 1.22662 1.01157 0.93102 0.92249 1.61952 1.04657 1.48610 1.10913 1.22199 0.97082 0.99925 0.87568 1.21294 0.92872 1.02950 0.96144 1.23232 1.02442 1.02686 0.97886 1.84628 1.02033 1.90029 1.13564 1.22652 0.98399 1.53853 0.91726 0.91051 1.25009 0.95153 0.94603 0.98972 1.70010 1.01882 1.43661 1.34928 0.86230 0.77424 0.78785 0.83131 1.19946 1.20795 1.19972 1.22464 0.89011 1.00892 0.96479 1.22224 0.96952 0.94312 0.88688 1.21303 0.92489 0.98974 1.01418 1.17324 0.89496 0.81319 1.04434 1.91518 1.79895 1.45840 1.93899 0.90342 0.90816 0.90548 0.84171 0.84414 0.90065 0.88471 0.94349 0.88294 0.94858 0.90601 0.90643 0.91636 0.92400 0.92132 0.92245 0.94415 0.89240 0.88847 0.89902 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 9.82 36.01 0.35 -0.13 16 2 C -0.10 -0.61 5.89 -104.47 -0.62 -1.23 16 3 C -0.10 -0.54 9.68 -39.65 -0.38 -0.92 16 4 C -0.08 -0.55 9.73 -39.18 -0.38 -0.94 16 5 C -0.10 -0.87 5.04 -104.97 -0.53 -1.40 16 6 C 0.56 6.13 7.26 -12.32 -0.09 6.05 16 7 O -0.53 -7.59 16.50 5.32 0.09 -7.50 16 8 N -0.60 -5.87 3.00 -173.29 -0.52 -6.39 16 9 C 0.12 1.18 6.62 -3.36 -0.02 1.16 16 10 C 0.04 0.39 5.48 -3.46 -0.02 0.37 16 11 N -0.54 -5.85 4.63 -234.03 -1.08 -6.94 16 12 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 13 C -0.09 -1.46 5.15 -26.73 -0.14 -1.60 16 14 C -0.11 -2.22 5.67 37.16 0.21 -2.01 16 15 S -0.13 -3.39 21.44 -107.50 -2.30 -5.69 16 16 C -0.52 -14.81 9.50 30.94 0.29 -14.51 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 19 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 20 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.04 0.35 5.62 -3.70 -0.02 0.33 16 25 C 0.10 0.78 5.42 -3.60 -0.02 0.76 16 26 C -0.12 -0.91 7.35 -39.11 -0.29 -1.20 16 27 C 0.09 0.69 7.23 -39.48 -0.29 0.40 16 28 F -0.13 -1.07 16.46 2.25 0.04 -1.03 16 29 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.07 0.32 7.63 -51.93 -0.40 -0.08 16 31 H 0.08 0.20 8.08 -51.93 -0.42 -0.22 16 32 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 33 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.05 7.08 -51.93 -0.37 0.68 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 1.10 6.16 -51.93 -0.32 0.78 16 38 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.08 0.90 7.97 -51.93 -0.41 0.49 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.02 6.40 -51.93 -0.33 0.69 16 42 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.68 7.99 -51.93 -0.41 0.27 16 47 H 0.09 0.60 4.67 -51.93 -0.24 0.36 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.14 0.92 6.97 -52.49 -0.37 0.56 16 LS Contribution 410.47 15.07 6.19 6.19 Total: -1.00 -33.37 410.47 -11.40 -44.77 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.47 Total: -2.47 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.05 Total: -12.19 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.87 Total: -38.50 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.30 Total: -5.69 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.37 -11.40 -44.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080631457.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.243 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds