Wall clock time and date at job start Tue Mar 31 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99593 * 2 1 4 4 H 1.48503 * 109.46739 * 239.99589 * 3 2 1 5 5 H 1.48495 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47126 * 119.99823 * 3 2 1 7 7 C 1.37875 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99428 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00292 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00448 * 270.00245 * 10 9 7 12 12 C 1.50703 * 109.46819 * 270.00032 * 11 10 9 13 13 C 1.38676 * 120.41830 * 269.71793 * 12 11 10 14 14 C 1.38625 * 118.41598 * 179.78729 * 13 12 11 15 15 C 1.38219 * 119.16476 * 0.51106 * 14 13 12 16 16 N 1.31854 * 120.76264 * 359.72732 * 15 14 13 17 17 C 1.31881 * 121.72917 * 359.97438 * 16 15 14 18 18 C 1.34777 * 119.99482 * 90.00478 * 10 9 7 19 19 O 1.21592 * 119.99766 * 180.27967 * 18 10 9 20 20 N 1.34779 * 120.00278 * 359.97438 * 18 10 9 21 21 C 1.40156 * 119.99889 * 174.75605 * 20 18 10 22 22 C 1.38860 * 120.08232 * 326.69826 * 21 20 18 23 23 C 1.37910 * 119.87861 * 179.83264 * 22 21 20 24 24 C 1.39142 * 120.31593 * 0.55780 * 23 22 21 25 25 C 1.38374 * 119.80616 * 359.57981 * 24 23 22 26 26 C 1.38474 * 119.89537 * 0.16559 * 25 24 23 27 27 C 1.50782 * 121.40823 * 180.33091 * 25 24 23 28 28 C 1.53065 * 109.69474 * 342.16928 * 27 25 24 29 29 C 1.53409 * 108.29289 * 48.22493 * 28 27 25 30 30 O 1.35947 * 118.42504 * 179.42448 * 24 23 22 31 31 H 0.97000 * 120.00122 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.47063 * 59.99812 * 9 7 2 33 33 H 1.09000 * 109.47355 * 300.00353 * 9 7 2 34 34 H 1.09001 * 109.46834 * 29.99803 * 11 10 9 35 35 H 1.08994 * 109.47019 * 150.00274 * 11 10 9 36 36 H 1.07991 * 120.78868 * 0.02691 * 13 12 11 37 37 H 1.08007 * 120.41384 * 180.22213 * 14 13 12 38 38 H 1.08006 * 119.62204 * 179.75296 * 15 14 13 39 39 H 1.07998 * 119.62247 * 179.97438 * 17 16 15 40 40 H 0.96991 * 119.99726 * 354.75960 * 20 18 10 41 41 H 1.07996 * 120.05819 * 0.09525 * 22 21 20 42 42 H 1.08004 * 119.83684 * 180.28846 * 23 22 21 43 43 H 1.07998 * 119.86688 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.43741 * 102.24165 * 27 25 24 45 45 H 1.09008 * 109.43500 * 222.10176 * 27 25 24 46 46 H 1.08996 * 109.69911 * 167.92442 * 28 27 25 47 47 H 1.08996 * 109.69729 * 288.52485 * 28 27 25 48 48 H 1.08997 * 109.68229 * 54.98058 * 29 28 27 49 49 H 1.09000 * 109.68331 * 175.50569 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6794 -4.1694 -1.2681 12 6 1.7627 -5.2836 -1.7032 13 6 2.0119 -6.5907 -1.3126 14 6 1.1393 -7.5825 -1.7329 15 6 0.0636 -7.2397 -2.5303 16 7 -0.1396 -5.9865 -2.8864 17 6 0.6662 -5.0165 -2.5006 18 6 2.6410 -4.1248 1.1678 19 8 3.4351 -5.0456 1.1679 20 7 2.2034 -3.6123 2.3350 21 6 2.5715 -4.2136 3.5463 22 6 2.7497 -5.5891 3.6146 23 6 3.1153 -6.1760 4.8078 24 6 3.2954 -5.3979 5.9472 25 6 3.1150 -4.0276 5.8798 26 6 2.7530 -3.4372 4.6807 27 6 3.3078 -3.1493 7.0901 28 6 3.2647 -4.0035 8.3595 29 6 4.1838 -5.2148 8.1562 30 8 3.6442 -6.0178 7.1057 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8902 34 1 2.6871 -3.3877 -2.0278 35 1 3.6888 -4.5593 -1.1377 36 1 2.8632 -6.8297 -0.6927 37 1 1.3006 -8.6108 -1.4446 38 1 -0.6187 -8.0071 -2.8652 39 1 0.4678 -4.0018 -2.8127 40 1 1.6336 -2.8273 2.3366 41 1 2.6064 -6.1975 2.7339 42 1 3.2583 -7.2453 4.8590 43 1 2.6120 -2.3678 4.6287 44 1 4.2728 -2.6468 7.0237 45 1 2.5133 -2.4038 7.1275 46 1 3.6130 -3.4165 9.2093 47 1 2.2446 -4.3424 8.5398 48 1 5.1830 -4.8757 7.8830 49 1 4.2325 -5.7972 9.0763 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084425045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:49 Heat of formation + Delta-G solvation = -4.101047 kcal Electronic energy + Delta-G solvation = -32829.533735 eV Core-core repulsion = 28528.679796 eV Total energy + Delta-G solvation = -4300.853939 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.71212 -40.12487 -39.48365 -37.42639 -35.32812 -34.34721 -34.03963 -32.95801 -32.11982 -31.29793 -30.37049 -28.97185 -27.63284 -26.04495 -25.38557 -23.67373 -23.41037 -22.87597 -22.41819 -21.92180 -20.26834 -19.06649 -17.76783 -17.61604 -16.98003 -16.80236 -16.50231 -16.28287 -15.86198 -15.44328 -15.22116 -14.85961 -14.60637 -14.54026 -14.27769 -14.09936 -13.68744 -13.60668 -13.30904 -13.15876 -13.08361 -12.98230 -12.78223 -12.69545 -12.45476 -12.01097 -11.84801 -11.76315 -11.38269 -11.21944 -11.12923 -11.05993 -10.99275 -10.81681 -10.50676 -10.32522 -9.93842 -9.66401 -9.51327 -9.34201 -9.22927 -8.79749 -8.67401 -8.58944 -7.94401 -7.31081 -6.28695 -4.38354 1.29883 1.51349 1.53142 1.60290 3.17765 3.21006 3.23809 3.26806 3.38695 3.63263 4.04402 4.11223 4.23523 4.52864 4.60153 4.63697 4.68244 4.70576 4.92446 5.03868 5.04271 5.10125 5.17029 5.25694 5.28862 5.32819 5.36255 5.47476 5.52309 5.59343 5.63470 5.74812 5.88082 5.88650 5.92515 6.03749 6.14637 6.18009 6.20451 6.36285 6.52774 6.52881 6.58446 6.64774 6.78327 6.94283 6.99974 7.21732 7.28097 7.58761 7.65192 7.66303 7.91343 8.19521 8.44182 8.72625 9.13993 9.31771 10.77166 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.006874 B = 0.003381 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4072.169326 B = 8278.529969 C =11747.341195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.239 3.761 10 N -0.605 5.605 11 C 0.179 3.821 12 C -0.147 4.147 13 C -0.054 4.054 14 C -0.182 4.182 15 C 0.090 3.910 16 N -0.490 5.490 17 C 0.115 3.885 18 C 0.711 3.289 19 O -0.604 6.604 20 N -0.681 5.681 21 C 0.159 3.841 22 C -0.091 4.091 23 C -0.128 4.128 24 C 0.099 3.901 25 C -0.139 4.139 26 C -0.120 4.120 27 C -0.077 4.077 28 C -0.159 4.159 29 C 0.062 3.938 30 O -0.320 6.320 31 H 0.267 0.733 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.419 0.581 41 H 0.141 0.859 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -9.998 9.373 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.337 5.337 11 C 0.054 3.946 12 C -0.150 4.150 13 C -0.081 4.081 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.198 5.198 17 C -0.042 4.042 18 C 0.413 3.587 19 O -0.484 6.484 20 N -0.330 5.330 21 C 0.062 3.938 22 C -0.112 4.112 23 C -0.147 4.147 24 C 0.054 3.946 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.114 4.114 28 C -0.196 4.196 29 C -0.014 4.014 30 O -0.234 6.234 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.175 0.825 40 H 0.258 0.742 41 H 0.159 0.841 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.902 -10.458 8.778 14.200 hybrid contribution 0.794 1.557 0.574 1.840 sum 4.697 -8.901 9.352 13.738 Atomic orbital electron populations 1.69912 1.05991 1.27657 1.48976 1.24947 0.94834 0.99328 0.94495 0.86555 0.79546 0.82488 0.78903 1.20031 1.21117 1.20127 1.21479 0.93699 0.90332 1.52943 0.91922 1.19383 0.87450 0.82653 0.98605 1.47395 1.47601 1.36035 1.02689 1.20020 0.95750 0.93107 0.85725 1.21476 0.98708 0.96068 0.98769 1.21672 0.98592 0.92151 0.95666 1.22106 0.96975 1.00440 1.00669 1.22691 0.95767 0.93551 0.94747 1.67699 1.28972 1.00809 1.22351 1.22807 0.89618 0.98540 0.93271 1.15773 0.80409 0.81846 0.80657 1.90803 1.38503 1.32556 1.86583 1.42868 1.53585 1.33657 1.02853 1.17440 0.99470 0.91611 0.85248 1.20979 0.99440 0.93305 0.97481 1.20399 1.04485 0.99909 0.89905 1.18556 0.99591 0.90636 0.85808 1.19456 1.06070 0.92809 0.95749 1.20629 1.02515 0.99589 0.91382 1.20447 1.02923 0.96993 0.91008 1.22220 1.01376 0.97567 0.98455 1.22884 0.96150 0.92677 0.89657 1.85982 1.78462 1.36887 1.22094 0.92287 0.94108 0.95153 0.88954 0.89621 0.84374 0.85288 0.83341 0.82548 0.74160 0.84112 0.85389 0.85398 0.90551 0.89993 0.90038 0.90484 0.92098 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.29 13.29 55.43 0.74 -22.55 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.55 -13.30 9.39 -34.44 -0.32 -13.62 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.24 5.29 4.88 -5.20 -0.03 5.27 16 10 N -0.60 -11.91 2.44 -182.18 -0.44 -12.36 16 11 C 0.18 3.07 5.56 -5.19 -0.03 3.04 16 12 C -0.15 -2.37 5.48 -104.48 -0.57 -2.94 16 13 C -0.05 -0.81 9.86 -39.28 -0.39 -1.20 16 14 C -0.18 -2.38 10.11 -39.45 -0.40 -2.78 16 15 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 16 N -0.49 -7.95 10.36 -13.25 -0.14 -8.08 16 17 C 0.11 1.88 10.86 -17.55 -0.19 1.69 16 18 C 0.71 14.29 8.02 -86.92 -0.70 13.60 16 19 O -0.60 -12.61 13.29 5.28 0.07 -12.54 16 20 N -0.68 -12.81 5.18 -14.22 -0.07 -12.88 16 21 C 0.16 2.75 6.28 -83.66 -0.53 2.22 16 22 C -0.09 -1.53 8.65 -39.47 -0.34 -1.87 16 23 C -0.13 -1.92 9.93 -39.37 -0.39 -2.31 16 24 C 0.10 1.44 6.47 -39.20 -0.25 1.18 16 25 C -0.14 -1.93 5.75 -104.44 -0.60 -2.54 16 26 C -0.12 -1.84 9.58 -39.34 -0.38 -2.22 16 27 C -0.08 -0.80 5.85 -27.81 -0.16 -0.97 16 28 C -0.16 -1.36 6.19 -26.49 -0.16 -1.53 16 29 C 0.06 0.57 7.03 37.37 0.26 0.83 16 30 O -0.32 -4.18 10.27 -19.57 -0.20 -4.38 16 31 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.03 0.71 6.45 -51.93 -0.33 0.37 16 34 H 0.09 1.53 8.02 -51.93 -0.42 1.11 16 35 H 0.09 1.45 7.37 -51.93 -0.38 1.07 16 36 H 0.14 2.08 7.72 -52.49 -0.41 1.67 16 37 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.15 1.56 8.06 -52.48 -0.42 1.13 16 39 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 40 H 0.42 7.99 6.63 -40.82 -0.27 7.72 16 41 H 0.14 2.48 6.42 -52.49 -0.34 2.15 16 42 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 43 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 408.16 15.07 6.15 6.15 Total: -1.00 -29.07 408.16 -11.15 -40.22 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -6.76 Total: 13.21 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -5.47 Total: -1.51 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.08 Total: -55.87 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.13 Total: -16.92 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.07 -11.15 -40.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084425045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.118 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds