Wall clock time and date at job start Tue Mar 31 2020 06:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99593 * 2 1 4 4 H 1.48503 * 109.46739 * 239.99589 * 3 2 1 5 5 H 1.48495 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47126 * 119.99823 * 3 2 1 7 7 C 1.37875 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99428 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00292 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00448 * 270.00245 * 10 9 7 12 12 C 1.50703 * 109.46819 * 270.00032 * 11 10 9 13 13 C 1.38676 * 120.41830 * 269.71793 * 12 11 10 14 14 C 1.38625 * 118.41598 * 179.78729 * 13 12 11 15 15 C 1.38219 * 119.16476 * 0.51106 * 14 13 12 16 16 N 1.31854 * 120.76264 * 359.72732 * 15 14 13 17 17 C 1.31881 * 121.72917 * 359.97438 * 16 15 14 18 18 C 1.34777 * 119.99482 * 90.00478 * 10 9 7 19 19 O 1.21592 * 119.99766 * 180.27967 * 18 10 9 20 20 N 1.34779 * 120.00278 * 359.97438 * 18 10 9 21 21 C 1.40156 * 119.99889 * 174.75605 * 20 18 10 22 22 C 1.38860 * 120.08232 * 326.69826 * 21 20 18 23 23 C 1.37910 * 119.87861 * 179.83264 * 22 21 20 24 24 C 1.39142 * 120.31593 * 0.55780 * 23 22 21 25 25 C 1.38374 * 119.80616 * 359.57981 * 24 23 22 26 26 C 1.38474 * 119.89537 * 0.16559 * 25 24 23 27 27 C 1.50782 * 121.40823 * 180.33091 * 25 24 23 28 28 C 1.53065 * 109.69474 * 342.16928 * 27 25 24 29 29 C 1.53409 * 108.29289 * 48.22493 * 28 27 25 30 30 O 1.35947 * 118.42504 * 179.42448 * 24 23 22 31 31 H 0.97000 * 120.00122 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.47063 * 59.99812 * 9 7 2 33 33 H 1.09000 * 109.47355 * 300.00353 * 9 7 2 34 34 H 1.09001 * 109.46834 * 29.99803 * 11 10 9 35 35 H 1.08994 * 109.47019 * 150.00274 * 11 10 9 36 36 H 1.07991 * 120.78868 * 0.02691 * 13 12 11 37 37 H 1.08007 * 120.41384 * 180.22213 * 14 13 12 38 38 H 1.08006 * 119.62204 * 179.75296 * 15 14 13 39 39 H 1.07998 * 119.62247 * 179.97438 * 17 16 15 40 40 H 0.96991 * 119.99726 * 354.75960 * 20 18 10 41 41 H 1.07996 * 120.05819 * 0.09525 * 22 21 20 42 42 H 1.08004 * 119.83684 * 180.28846 * 23 22 21 43 43 H 1.07998 * 119.86688 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.43741 * 102.24165 * 27 25 24 45 45 H 1.09008 * 109.43500 * 222.10176 * 27 25 24 46 46 H 1.08996 * 109.69911 * 167.92442 * 28 27 25 47 47 H 1.08996 * 109.69729 * 288.52485 * 28 27 25 48 48 H 1.08997 * 109.68229 * 54.98058 * 29 28 27 49 49 H 1.09000 * 109.68331 * 175.50569 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6794 -4.1694 -1.2681 12 6 1.7627 -5.2836 -1.7032 13 6 2.0119 -6.5907 -1.3126 14 6 1.1393 -7.5825 -1.7329 15 6 0.0636 -7.2397 -2.5303 16 7 -0.1396 -5.9865 -2.8864 17 6 0.6662 -5.0165 -2.5006 18 6 2.6410 -4.1248 1.1678 19 8 3.4351 -5.0456 1.1679 20 7 2.2034 -3.6123 2.3350 21 6 2.5715 -4.2136 3.5463 22 6 2.7497 -5.5891 3.6146 23 6 3.1153 -6.1760 4.8078 24 6 3.2954 -5.3979 5.9472 25 6 3.1150 -4.0276 5.8798 26 6 2.7530 -3.4372 4.6807 27 6 3.3078 -3.1493 7.0901 28 6 3.2647 -4.0035 8.3595 29 6 4.1838 -5.2148 8.1562 30 8 3.6442 -6.0178 7.1057 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8902 34 1 2.6871 -3.3877 -2.0278 35 1 3.6888 -4.5593 -1.1377 36 1 2.8632 -6.8297 -0.6927 37 1 1.3006 -8.6108 -1.4446 38 1 -0.6187 -8.0071 -2.8652 39 1 0.4678 -4.0018 -2.8127 40 1 1.6336 -2.8273 2.3366 41 1 2.6064 -6.1975 2.7339 42 1 3.2583 -7.2453 4.8590 43 1 2.6120 -2.3678 4.6287 44 1 4.2728 -2.6468 7.0237 45 1 2.5133 -2.4038 7.1275 46 1 3.6130 -3.4165 9.2093 47 1 2.2446 -4.3424 8.5398 48 1 5.1830 -4.8757 7.8830 49 1 4.2325 -5.7972 9.0763 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084425045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:48 Heat of formation + Delta-G solvation = -18.300578 kcal Electronic energy + Delta-G solvation = -32830.149473 eV Core-core repulsion = 28528.679796 eV Total energy + Delta-G solvation = -4301.469677 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.94621 -41.33584 -40.75163 -38.64038 -36.88672 -35.57373 -35.12291 -34.71496 -33.46341 -32.53023 -31.41185 -30.16943 -29.39460 -27.34404 -26.40656 -25.13083 -24.59083 -24.29194 -23.60055 -23.11550 -21.44586 -20.35859 -19.22261 -18.73020 -18.64129 -18.10170 -17.90582 -17.38993 -17.07908 -16.71045 -16.54220 -16.33801 -16.07460 -15.71867 -15.33643 -15.13436 -14.99825 -14.70837 -14.54407 -14.49852 -14.21010 -14.16801 -14.09657 -13.93392 -13.85751 -13.51277 -13.25920 -13.06733 -12.80827 -12.70765 -12.45314 -12.42298 -12.11369 -12.02763 -11.82666 -11.77131 -11.42510 -11.19189 -10.75404 -10.65504 -10.60266 -10.44932 -9.98485 -9.76441 -9.54311 -8.58702 -8.21271 -6.37731 0.12120 0.32991 0.34244 0.38410 1.42386 1.44204 1.51212 1.81306 2.11317 2.39565 2.44621 2.81954 2.85359 3.08367 3.12253 3.55365 3.69708 3.78104 3.85814 3.89996 3.90676 3.99747 4.10435 4.11998 4.26548 4.29099 4.43148 4.47837 4.51751 4.64442 4.68421 4.71755 4.75009 4.81052 4.86211 4.88164 4.94321 4.98975 5.12350 5.13827 5.20243 5.21327 5.29740 5.39565 5.42480 5.54846 5.60259 5.74715 5.78923 5.95737 6.00683 6.10024 6.54277 6.66194 6.95515 7.02171 7.34923 7.58915 8.82829 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.006874 B = 0.003381 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4072.169326 B = 8278.529969 C =11747.341195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.054 0.946 9 C 0.257 3.743 10 N -0.606 5.606 11 C 0.180 3.820 12 C -0.156 4.156 13 C -0.063 4.063 14 C -0.171 4.171 15 C 0.089 3.911 16 N -0.511 5.511 17 C 0.101 3.899 18 C 0.706 3.294 19 O -0.614 6.614 20 N -0.681 5.681 21 C 0.129 3.871 22 C -0.103 4.103 23 C -0.133 4.133 24 C 0.101 3.899 25 C -0.138 4.138 26 C -0.123 4.123 27 C -0.080 4.080 28 C -0.152 4.152 29 C 0.051 3.949 30 O -0.330 6.330 31 H 0.268 0.732 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.165 0.835 38 H 0.185 0.815 39 H 0.150 0.850 40 H 0.414 0.586 41 H 0.126 0.874 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.113 0.887 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -10.671 11.317 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.072 0.928 9 C 0.136 3.864 10 N -0.339 5.339 11 C 0.056 3.944 12 C -0.160 4.160 13 C -0.089 4.089 14 C -0.190 4.190 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.055 4.055 18 C 0.408 3.592 19 O -0.496 6.496 20 N -0.329 5.329 21 C 0.034 3.966 22 C -0.123 4.123 23 C -0.152 4.152 24 C 0.055 3.945 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.117 4.117 28 C -0.190 4.190 29 C -0.024 4.024 30 O -0.245 6.245 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.153 0.847 37 H 0.183 0.817 38 H 0.202 0.798 39 H 0.167 0.833 40 H 0.253 0.747 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.152 0.848 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.131 0.869 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.655 -11.144 10.741 16.162 hybrid contribution 0.591 1.644 0.081 1.749 sum 5.246 -9.499 10.822 15.326 Atomic orbital electron populations 1.70004 1.07156 1.28325 1.49951 1.25590 0.95449 1.02088 0.94203 0.85659 0.78396 0.79085 0.78841 1.19840 1.20823 1.19784 1.21626 0.93311 0.91371 1.52458 0.92796 1.18993 0.87360 0.82835 0.97227 1.47367 1.47279 1.35605 1.03609 1.20069 0.96036 0.93594 0.84706 1.21315 0.98767 0.96279 0.99609 1.21766 0.99133 0.92197 0.95818 1.22461 0.95688 1.01625 0.99212 1.23325 0.96265 0.93273 0.93933 1.67710 1.29261 1.01878 1.23137 1.22733 0.90107 0.98677 0.94026 1.15904 0.80462 0.81883 0.80967 1.90779 1.39061 1.33021 1.86778 1.42848 1.53459 1.33440 1.03188 1.17702 1.01442 0.92184 0.85251 1.20870 1.00639 0.93050 0.97769 1.20556 1.04119 1.00816 0.89680 1.18660 0.98699 0.90836 0.86298 1.19847 1.04471 0.93199 0.96445 1.20790 1.02388 0.99868 0.91384 1.20588 1.03826 0.96942 0.90350 1.22223 1.01126 0.97243 0.98391 1.23279 0.96345 0.93289 0.89456 1.85975 1.78383 1.37999 1.22129 0.92253 0.95524 0.96337 0.88929 0.89594 0.84665 0.81737 0.79794 0.83270 0.74697 0.85662 0.83927 0.84757 0.89400 0.89143 0.86913 0.90957 0.91462 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.82 13.29 21.45 0.28 -48.54 16 2 C 0.03 1.41 5.46 84.65 0.46 1.87 16 3 Si 0.95 40.61 29.54 68.60 2.03 42.63 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -27.40 9.39 25.60 0.24 -27.16 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.26 11.87 4.88 85.63 0.42 12.28 16 10 N -0.61 -24.91 2.44 -848.56 -2.07 -26.98 16 11 C 0.18 6.45 5.56 85.63 0.48 6.92 16 12 C -0.16 -5.19 5.48 -19.77 -0.11 -5.30 16 13 C -0.06 -1.86 9.86 22.47 0.22 -1.64 16 14 C -0.17 -4.14 10.11 22.36 0.23 -3.91 16 15 C 0.09 2.27 11.18 84.68 0.95 3.22 16 16 N -0.51 -16.45 10.36 -195.85 -2.03 -18.48 16 17 C 0.10 3.42 10.86 84.67 0.92 4.34 16 18 C 0.71 29.50 8.02 179.05 1.44 30.94 16 19 O -0.61 -26.54 13.29 -4.01 -0.05 -26.59 16 20 N -0.68 -26.73 5.18 -317.17 -1.64 -28.38 16 21 C 0.13 4.61 6.28 38.06 0.24 4.85 16 22 C -0.10 -3.54 8.65 22.34 0.19 -3.34 16 23 C -0.13 -3.96 9.93 22.41 0.22 -3.74 16 24 C 0.10 2.81 6.47 22.52 0.15 2.95 16 25 C -0.14 -3.67 5.75 -19.75 -0.11 -3.79 16 26 C -0.12 -3.80 9.58 22.43 0.21 -3.58 16 27 C -0.08 -1.48 5.85 29.90 0.18 -1.31 16 28 C -0.15 -2.10 6.19 30.75 0.19 -1.91 16 29 C 0.05 0.77 7.03 72.12 0.51 1.28 16 30 O -0.33 -7.94 10.27 -92.95 -0.95 -8.89 16 31 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 32 H 0.03 1.30 8.07 -2.38 -0.02 1.29 16 33 H 0.02 0.91 6.45 -2.39 -0.02 0.89 16 34 H 0.09 3.23 8.02 -2.39 -0.02 3.21 16 35 H 0.09 3.04 7.37 -2.39 -0.02 3.02 16 36 H 0.14 4.09 7.72 -2.92 -0.02 4.07 16 37 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.19 3.27 8.06 -2.91 -0.02 3.24 16 39 H 0.15 5.07 8.06 -2.91 -0.02 5.05 16 40 H 0.41 16.62 6.63 -92.71 -0.61 16.00 16 41 H 0.13 4.63 6.42 -2.91 -0.02 4.61 16 42 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 44 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -63.39 408.16 2.94 -60.45 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: 0.37 Total: 41.80 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 7.01 Total: 12.97 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -5.46 Total: -122.37 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.01 Total: -35.49 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -63.39 2.94 -60.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084425045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.152 kcal (2) G-P(sol) polarization free energy of solvation -63.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds