Wall clock time and date at job start Tue Mar 31 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47549 * 240.00573 * 3 2 1 5 5 H 1.48498 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47185 * 120.00646 * 3 2 1 7 7 C 1.37878 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47103 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00036 * 269.99916 * 10 9 7 12 12 C 1.52995 * 109.47198 * 269.99978 * 11 10 9 13 13 C 1.53003 * 109.47387 * 179.97438 * 12 11 10 14 14 F 1.39899 * 109.47039 * 60.00224 * 13 12 11 15 15 F 1.39899 * 109.47059 * 179.97438 * 13 12 11 16 16 F 1.39895 * 109.47046 * 300.00326 * 13 12 11 17 17 C 1.34784 * 120.00100 * 89.99731 * 10 9 7 18 18 O 1.21279 * 119.99664 * 359.72737 * 17 10 9 19 19 C 1.50695 * 119.99746 * 179.97438 * 17 10 9 20 20 H 1.08996 * 115.56338 * 33.55183 * 19 17 10 21 21 C 1.53130 * 117.51272 * 179.37249 * 19 17 10 22 22 C 1.52371 * 59.85270 * 107.43876 * 21 19 17 23 23 C 1.53772 * 121.20798 * 249.48543 * 22 21 19 24 24 C 1.54478 * 102.20883 * 189.98388 * 23 22 21 25 25 C 1.51424 * 105.23430 * 25.73407 * 24 23 22 26 26 C 1.38467 * 130.36643 * 163.17907 * 25 24 23 27 27 C 1.38096 * 120.26499 * 179.97438 * 26 25 24 28 28 C 1.38255 * 119.91654 * 359.97438 * 27 26 25 29 29 C 1.38086 * 119.93263 * 0.02562 * 28 27 26 30 30 C 1.38384 * 109.79682 * 343.13387 * 25 24 23 31 31 H 0.97001 * 120.00013 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47205 * 60.00034 * 9 7 2 33 33 H 1.09001 * 109.46735 * 300.00388 * 9 7 2 34 34 H 1.09001 * 109.47263 * 29.99867 * 11 10 9 35 35 H 1.09000 * 109.47171 * 149.99740 * 11 10 9 36 36 H 1.09004 * 109.47414 * 300.00201 * 12 11 10 37 37 H 1.09000 * 109.47254 * 59.99813 * 12 11 10 38 38 H 1.08994 * 117.51247 * 214.88454 * 21 19 17 39 39 H 1.08998 * 117.51841 * 359.97438 * 21 19 17 40 40 H 1.09003 * 110.85821 * 308.16195 * 23 22 21 41 41 H 1.09000 * 110.85972 * 71.59785 * 23 22 21 42 42 H 1.09003 * 110.29574 * 144.67093 * 24 23 22 43 43 H 1.08997 * 110.29371 * 266.79027 * 24 23 22 44 44 H 1.08001 * 119.86709 * 359.91620 * 26 25 24 45 45 H 1.08000 * 120.03885 * 179.97438 * 27 26 25 46 46 H 1.07995 * 120.03495 * 180.02562 * 28 27 26 47 47 H 1.08005 * 119.85352 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7481 -5.3007 -1.7109 13 6 2.2448 -5.8818 -3.0363 14 9 3.5406 -6.3823 -2.8695 15 9 1.3941 -6.9165 -3.4397 16 9 2.2544 -4.8783 -4.0110 17 6 2.6409 -4.1249 1.1667 18 8 2.2506 -3.6607 2.2170 19 6 3.6196 -5.2708 1.1666 20 1 4.3381 -5.2755 0.3470 21 6 4.0907 -5.7988 2.5246 22 6 3.1255 -6.6189 1.6777 23 6 1.6621 -6.8190 2.1057 24 6 1.1751 -7.8960 1.1111 25 6 2.4217 -8.6513 0.7007 26 6 2.5617 -9.8859 0.0896 27 6 3.8183 -10.3832 -0.1949 28 6 4.9416 -9.6459 0.1308 29 6 4.8046 -8.4144 0.7403 30 6 3.5458 -7.9131 1.0269 31 1 -0.4850 0.8401 0.0004 32 1 0.6239 -2.5567 -0.8903 33 1 0.6246 -2.5570 0.8897 34 1 2.6866 -3.3879 -2.0289 35 1 3.6883 -4.5595 -1.1389 36 1 1.7403 -6.0823 -0.9512 37 1 0.7387 -4.9107 -1.8412 38 1 5.1196 -6.1507 2.5986 39 1 3.6930 -5.3170 3.4178 40 1 1.6041 -7.1834 3.1314 41 1 1.0945 -5.8955 1.9913 42 1 0.4688 -8.5685 1.5979 43 1 0.7140 -7.4270 0.2419 44 1 1.6848 -10.4628 -0.1647 45 1 3.9233 -11.3468 -0.6712 46 1 5.9251 -10.0328 -0.0912 47 1 5.6830 -7.8394 0.9938 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084581826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:22 Heat of formation + Delta-G solvation = -143.867603 kcal Electronic energy + Delta-G solvation = -35064.264299 eV Core-core repulsion = 30183.200137 eV Total energy + Delta-G solvation = -4881.064163 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.02759 -47.53596 -47.48823 -40.83623 -39.12031 -36.79358 -35.61025 -33.84896 -32.98362 -31.46314 -30.75361 -28.95203 -27.81283 -25.54116 -25.10203 -24.10126 -22.79653 -22.44067 -21.73635 -21.10919 -19.77984 -18.66602 -18.47310 -17.76872 -17.43666 -16.70477 -16.42931 -16.38137 -15.59085 -15.30229 -15.16145 -14.97563 -14.60571 -14.44384 -14.31016 -14.09215 -13.94666 -13.91473 -13.68511 -13.65563 -13.44229 -13.29115 -13.06435 -12.71155 -12.45798 -12.34450 -12.13278 -12.02252 -11.83381 -11.65409 -11.51427 -11.34638 -11.19802 -11.10721 -10.92857 -10.87607 -10.65008 -10.34282 -10.22582 -10.16709 -9.74388 -9.11525 -8.87695 -8.48222 -8.46155 -7.87472 -6.09931 -4.14826 1.18668 1.28075 2.79803 2.99180 3.30001 3.34365 3.37193 3.56544 3.62813 3.97773 4.07942 4.13362 4.14022 4.34234 4.38923 4.44850 4.67241 4.84609 4.87314 4.91086 4.96607 4.97877 5.09786 5.17725 5.24178 5.27161 5.30855 5.40989 5.48194 5.50931 5.61526 5.74269 5.78022 5.85455 5.90643 5.99545 6.02852 6.09505 6.10487 6.19958 6.37612 6.40594 6.58532 6.88038 6.91154 7.31485 7.39882 7.85678 8.15139 8.22678 8.81064 8.96139 9.50680 10.98247 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.003650 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.943239 B = 7669.837515 C = 9114.189045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.246 3.754 10 N -0.589 5.589 11 C 0.114 3.886 12 C -0.190 4.190 13 C 0.456 3.544 14 F -0.184 7.184 15 F -0.187 7.187 16 F -0.181 7.181 17 C 0.539 3.461 18 O -0.529 6.529 19 C -0.169 4.169 20 H 0.121 0.879 21 C -0.130 4.130 22 C -0.067 4.067 23 C -0.088 4.088 24 C -0.083 4.083 25 C -0.088 4.088 26 C -0.108 4.108 27 C -0.120 4.120 28 C -0.121 4.121 29 C -0.102 4.102 30 C -0.057 4.057 31 H 0.264 0.736 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -20.437 -2.410 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.320 5.320 11 C -0.011 4.011 12 C -0.229 4.229 13 C 0.402 3.598 14 F -0.166 7.166 15 F -0.169 7.169 16 F -0.163 7.163 17 C 0.326 3.674 18 O -0.405 6.405 19 C -0.190 4.190 20 H 0.139 0.861 21 C -0.167 4.167 22 C -0.068 4.068 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.088 4.088 26 C -0.126 4.126 27 C -0.138 4.138 28 C -0.139 4.139 29 C -0.120 4.120 30 C -0.057 4.057 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.896 -20.028 -1.877 20.962 hybrid contribution 0.670 0.799 -0.546 1.177 sum 6.566 -19.229 -2.423 20.463 Atomic orbital electron populations 1.69912 1.05987 1.27245 1.50105 1.24915 0.94877 0.99224 0.94901 0.86556 0.79543 0.82648 0.78686 1.20187 1.21163 1.20152 1.21368 0.93380 0.90557 1.51543 0.92393 1.19354 0.87304 0.82040 0.98572 1.48088 1.45867 1.34752 1.03292 1.21329 0.95926 0.94878 0.88972 1.23492 1.04564 1.02224 0.92660 1.20530 0.75391 0.76017 0.87897 1.93176 1.39581 1.88162 1.95647 1.93172 1.70883 1.60620 1.92209 1.93200 1.96279 1.60631 1.66170 1.19277 0.81377 0.82668 0.84111 1.90682 1.57876 1.61157 1.30833 1.22525 1.02424 0.93489 1.00576 0.86138 1.22935 0.98832 1.00529 0.94444 1.20260 0.96190 0.87929 1.02380 1.21868 0.92217 0.99429 0.99038 1.21119 0.94943 0.96578 0.99313 1.20593 0.95768 0.94361 0.98128 1.20599 0.97543 0.95032 0.99470 1.21017 0.92395 0.99916 1.00452 1.20987 0.98661 0.94777 0.99469 1.20600 0.96256 0.95992 0.99171 1.19696 0.93244 0.94184 0.98532 0.92590 0.94872 0.93580 0.88553 0.90290 0.87400 0.86663 0.88101 0.86823 0.90123 0.89591 0.90387 0.90120 0.86297 0.86051 0.86006 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.25 6.04 5.16 -5.19 -0.03 6.01 16 10 N -0.59 -11.55 2.46 -175.06 -0.43 -11.98 16 11 C 0.11 1.77 4.99 -4.04 -0.02 1.75 16 12 C -0.19 -2.49 5.58 -26.73 -0.15 -2.64 16 13 C 0.46 5.87 3.16 37.16 0.12 5.99 16 14 F -0.18 -2.40 16.80 2.25 0.04 -2.36 16 15 F -0.19 -2.42 17.32 2.25 0.04 -2.38 16 16 F -0.18 -2.52 16.80 2.25 0.04 -2.48 16 17 C 0.54 10.42 6.17 -10.98 -0.07 10.35 16 18 O -0.53 -12.35 15.47 5.56 0.09 -12.27 16 19 C -0.17 -2.48 5.18 -92.01 -0.48 -2.95 16 20 H 0.12 1.60 6.41 -51.93 -0.33 1.27 16 21 C -0.13 -1.70 9.74 -26.99 -0.26 -1.96 16 22 C -0.07 -0.86 2.34 -155.82 -0.36 -1.22 16 23 C -0.09 -1.12 6.68 -25.55 -0.17 -1.29 16 24 C -0.08 -0.90 6.68 -26.75 -0.18 -1.08 16 25 C -0.09 -1.01 6.14 -104.13 -0.64 -1.65 16 26 C -0.11 -1.11 10.03 -39.55 -0.40 -1.50 16 27 C -0.12 -1.13 10.05 -39.63 -0.40 -1.53 16 28 C -0.12 -1.16 10.05 -39.63 -0.40 -1.56 16 29 C -0.10 -1.09 9.98 -39.54 -0.39 -1.49 16 30 C -0.06 -0.67 5.93 -104.41 -0.62 -1.29 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.10 1.57 7.73 -51.93 -0.40 1.17 16 35 H 0.08 1.08 5.65 -51.93 -0.29 0.79 16 36 H 0.11 1.35 6.83 -51.93 -0.35 1.00 16 37 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 39 H 0.11 1.63 7.67 -51.93 -0.40 1.23 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.30 6.58 -51.93 -0.34 0.96 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.88 6.94 -51.93 -0.36 0.52 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 47 H 0.12 1.10 8.05 -52.48 -0.42 0.68 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -31.27 399.88 -9.57 -40.84 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.21 Total: 2.44 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -4.87 Total: -9.21 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.31 Total: -37.05 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.11 Total: -7.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.27 -9.57 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084581826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.028 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds