Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47549 * 240.00573 * 3 2 1 5 5 H 1.48498 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47185 * 120.00646 * 3 2 1 7 7 C 1.37878 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47103 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00036 * 269.99916 * 10 9 7 12 12 C 1.52995 * 109.47198 * 269.99978 * 11 10 9 13 13 C 1.53003 * 109.47387 * 179.97438 * 12 11 10 14 14 F 1.39899 * 109.47039 * 60.00224 * 13 12 11 15 15 F 1.39899 * 109.47059 * 179.97438 * 13 12 11 16 16 F 1.39895 * 109.47046 * 300.00326 * 13 12 11 17 17 C 1.34784 * 120.00100 * 89.99731 * 10 9 7 18 18 O 1.21279 * 119.99664 * 359.72737 * 17 10 9 19 19 C 1.50695 * 119.99746 * 179.97438 * 17 10 9 20 20 H 1.08996 * 115.56338 * 33.55183 * 19 17 10 21 21 C 1.53130 * 117.51272 * 179.37249 * 19 17 10 22 22 C 1.52371 * 59.85270 * 107.43876 * 21 19 17 23 23 C 1.53772 * 121.20798 * 249.48543 * 22 21 19 24 24 C 1.54478 * 102.20883 * 189.98388 * 23 22 21 25 25 C 1.51424 * 105.23430 * 25.73407 * 24 23 22 26 26 C 1.38467 * 130.36643 * 163.17907 * 25 24 23 27 27 C 1.38096 * 120.26499 * 179.97438 * 26 25 24 28 28 C 1.38255 * 119.91654 * 359.97438 * 27 26 25 29 29 C 1.38086 * 119.93263 * 0.02562 * 28 27 26 30 30 C 1.38384 * 109.79682 * 343.13387 * 25 24 23 31 31 H 0.97001 * 120.00013 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47205 * 60.00034 * 9 7 2 33 33 H 1.09001 * 109.46735 * 300.00388 * 9 7 2 34 34 H 1.09001 * 109.47263 * 29.99867 * 11 10 9 35 35 H 1.09000 * 109.47171 * 149.99740 * 11 10 9 36 36 H 1.09004 * 109.47414 * 300.00201 * 12 11 10 37 37 H 1.09000 * 109.47254 * 59.99813 * 12 11 10 38 38 H 1.08994 * 117.51247 * 214.88454 * 21 19 17 39 39 H 1.08998 * 117.51841 * 359.97438 * 21 19 17 40 40 H 1.09003 * 110.85821 * 308.16195 * 23 22 21 41 41 H 1.09000 * 110.85972 * 71.59785 * 23 22 21 42 42 H 1.09003 * 110.29574 * 144.67093 * 24 23 22 43 43 H 1.08997 * 110.29371 * 266.79027 * 24 23 22 44 44 H 1.08001 * 119.86709 * 359.91620 * 26 25 24 45 45 H 1.08000 * 120.03885 * 179.97438 * 27 26 25 46 46 H 1.07995 * 120.03495 * 180.02562 * 28 27 26 47 47 H 1.08005 * 119.85352 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7481 -5.3007 -1.7109 13 6 2.2448 -5.8818 -3.0363 14 9 3.5406 -6.3823 -2.8695 15 9 1.3941 -6.9165 -3.4397 16 9 2.2544 -4.8783 -4.0110 17 6 2.6409 -4.1249 1.1667 18 8 2.2506 -3.6607 2.2170 19 6 3.6196 -5.2708 1.1666 20 1 4.3381 -5.2755 0.3470 21 6 4.0907 -5.7988 2.5246 22 6 3.1255 -6.6189 1.6777 23 6 1.6621 -6.8190 2.1057 24 6 1.1751 -7.8960 1.1111 25 6 2.4217 -8.6513 0.7007 26 6 2.5617 -9.8859 0.0896 27 6 3.8183 -10.3832 -0.1949 28 6 4.9416 -9.6459 0.1308 29 6 4.8046 -8.4144 0.7403 30 6 3.5458 -7.9131 1.0269 31 1 -0.4850 0.8401 0.0004 32 1 0.6239 -2.5567 -0.8903 33 1 0.6246 -2.5570 0.8897 34 1 2.6866 -3.3879 -2.0289 35 1 3.6883 -4.5595 -1.1389 36 1 1.7403 -6.0823 -0.9512 37 1 0.7387 -4.9107 -1.8412 38 1 5.1196 -6.1507 2.5986 39 1 3.6930 -5.3170 3.4178 40 1 1.6041 -7.1834 3.1314 41 1 1.0945 -5.8955 1.9913 42 1 0.4688 -8.5685 1.5979 43 1 0.7140 -7.4270 0.2419 44 1 1.6848 -10.4628 -0.1647 45 1 3.9233 -11.3468 -0.6712 46 1 5.9251 -10.0328 -0.0912 47 1 5.6830 -7.8394 0.9938 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084581826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = -157.891444 kcal Electronic energy + Delta-G solvation = -35064.872419 eV Core-core repulsion = 30183.200137 eV Total energy + Delta-G solvation = -4881.672282 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.09745 -48.59620 -48.56259 -41.90488 -40.39462 -37.89209 -37.10231 -35.03810 -34.73339 -32.94392 -31.55156 -29.79434 -29.67063 -26.78641 -26.38081 -25.52780 -23.79459 -23.59759 -23.16006 -21.90984 -20.83354 -19.85082 -19.54670 -19.05253 -18.76496 -18.31821 -17.99490 -17.43102 -17.04615 -16.40422 -16.17619 -16.01168 -15.88513 -15.69493 -15.52347 -15.37418 -15.01890 -14.96019 -14.76830 -14.72759 -14.60896 -14.58656 -14.21105 -13.99916 -13.74529 -13.52632 -13.38626 -13.22144 -13.14809 -13.00486 -12.79459 -12.64033 -12.60815 -12.47945 -12.36819 -12.15167 -11.98351 -11.76678 -11.68721 -11.36134 -11.23574 -10.68270 -10.63490 -9.65705 -9.60722 -9.30184 -8.23029 -6.36663 0.38566 0.53219 1.37462 1.40792 1.47693 1.58968 1.68831 2.17174 2.39929 2.69996 2.85003 3.01361 3.06203 3.08188 3.08496 3.34718 3.49725 3.59939 3.72643 3.81679 3.87650 3.91508 4.05247 4.21598 4.23703 4.26640 4.40499 4.46078 4.51623 4.53260 4.70123 4.75802 4.81647 4.85661 4.92497 4.95000 5.02565 5.09557 5.11670 5.16650 5.22627 5.30551 5.51419 5.61347 5.67433 5.78348 5.79013 6.04928 6.15143 6.61629 6.72330 7.26193 7.41305 8.84046 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.003650 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.943239 B = 7669.837515 C = 9114.189045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.263 3.737 10 N -0.593 5.593 11 C 0.113 3.887 12 C -0.180 4.180 13 C 0.467 3.533 14 F -0.181 7.181 15 F -0.184 7.184 16 F -0.187 7.187 17 C 0.536 3.464 18 O -0.580 6.580 19 C -0.177 4.177 20 H 0.140 0.860 21 C -0.126 4.126 22 C -0.051 4.051 23 C -0.093 4.093 24 C -0.078 4.078 25 C -0.099 4.099 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.123 4.123 29 C -0.108 4.108 30 C -0.073 4.073 31 H 0.267 0.733 32 H 0.027 0.973 33 H 0.004 0.996 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.426 -22.607 -3.566 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.072 0.928 9 C 0.142 3.858 10 N -0.322 5.322 11 C -0.011 4.011 12 C -0.220 4.220 13 C 0.412 3.588 14 F -0.162 7.162 15 F -0.166 7.166 16 F -0.168 7.168 17 C 0.325 3.675 18 O -0.460 6.460 19 C -0.198 4.198 20 H 0.158 0.842 21 C -0.163 4.163 22 C -0.052 4.052 23 C -0.130 4.130 24 C -0.115 4.115 25 C -0.099 4.099 26 C -0.134 4.134 27 C -0.137 4.137 28 C -0.141 4.141 29 C -0.126 4.126 30 C -0.073 4.073 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.022 0.978 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.153 0.847 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.047 -22.232 -3.070 23.841 hybrid contribution -0.012 1.385 -0.172 1.395 sum 8.035 -20.847 -3.242 22.576 Atomic orbital electron populations 1.70025 1.07417 1.28199 1.50842 1.25776 0.95744 1.02793 0.94432 0.85541 0.78387 0.78418 0.78933 1.18643 1.20431 1.20345 1.21673 0.93319 0.91959 1.51429 0.92849 1.18793 0.87655 0.83212 0.96134 1.47977 1.45161 1.33823 1.05280 1.21480 0.97551 0.95299 0.86763 1.23328 1.03785 1.01575 0.93285 1.20271 0.75428 0.75864 0.87251 1.93184 1.39342 1.88087 1.95598 1.93180 1.70854 1.60410 1.92117 1.93195 1.96310 1.60971 1.66369 1.20053 0.81248 0.83193 0.83013 1.90646 1.59826 1.63006 1.32566 1.22385 1.02104 0.92786 1.02478 0.84208 1.23032 1.00543 0.99944 0.92751 1.20244 0.96037 0.87588 1.01296 1.21847 0.92278 0.98727 1.00149 1.21069 0.95498 0.96204 0.98735 1.20666 0.95370 0.95068 0.98837 1.20863 0.98769 0.94637 0.99154 1.21392 0.91951 1.00778 0.99536 1.21331 0.99973 0.94234 0.98583 1.20838 0.96095 0.96654 0.99000 1.19637 0.94205 0.93582 0.99914 0.92404 0.95466 0.97772 0.89398 0.87954 0.86533 0.86963 0.85038 0.88768 0.89520 0.92796 0.88823 0.90413 0.84709 0.83579 0.83612 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 2 C 0.01 0.68 5.46 84.65 0.46 1.14 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.55 -30.75 9.39 25.60 0.24 -30.51 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 9 C 0.26 13.61 5.16 85.63 0.44 14.05 16 10 N -0.59 -24.08 2.46 -826.16 -2.03 -26.11 16 11 C 0.11 3.47 4.99 86.38 0.43 3.90 16 12 C -0.18 -4.63 5.58 30.59 0.17 -4.46 16 13 C 0.47 11.25 3.16 71.98 0.23 11.48 16 14 F -0.18 -4.26 16.80 44.97 0.76 -3.51 16 15 F -0.18 -4.42 17.32 44.97 0.78 -3.64 16 16 F -0.19 -4.97 16.80 44.97 0.76 -4.21 16 17 C 0.54 21.51 6.17 87.65 0.54 22.05 16 18 O -0.58 -28.84 15.47 -3.03 -0.05 -28.89 16 19 C -0.18 -5.10 5.18 -11.69 -0.06 -5.16 16 20 H 0.14 3.45 6.41 -2.39 -0.02 3.44 16 21 C -0.13 -3.19 9.74 30.43 0.30 -2.89 16 22 C -0.05 -1.27 2.34 -53.03 -0.12 -1.40 16 23 C -0.09 -2.40 6.68 31.36 0.21 -2.20 16 24 C -0.08 -1.65 6.68 30.58 0.20 -1.45 16 25 C -0.10 -2.06 6.14 -19.54 -0.12 -2.18 16 26 C -0.12 -2.02 10.03 22.29 0.22 -1.79 16 27 C -0.12 -1.78 10.05 22.24 0.22 -1.56 16 28 C -0.12 -1.88 10.05 22.24 0.22 -1.66 16 29 C -0.11 -1.96 9.98 22.30 0.22 -1.74 16 30 C -0.07 -1.58 5.93 -19.73 -0.12 -1.70 16 31 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 33 H 0.00 0.25 7.42 -2.39 -0.02 0.23 16 34 H 0.09 2.86 7.73 -2.39 -0.02 2.85 16 35 H 0.10 2.66 5.65 -2.39 -0.01 2.65 16 36 H 0.12 2.83 6.83 -2.38 -0.02 2.81 16 37 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.13 2.48 8.13 -2.39 -0.02 2.46 16 39 H 0.09 2.79 7.67 -2.39 -0.02 2.77 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.75 6.58 -2.39 -0.02 1.73 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 1.66 6.94 -2.39 -0.02 1.64 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 46 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.13 1.97 8.05 -2.91 -0.02 1.94 16 Total: -1.00 -70.04 399.88 7.23 -62.82 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.00 Total: 17.74 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 3.70 Total: -6.05 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.74 Total: -80.77 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 9 Polarization: -13.65 SS G_CDS: 2.29 Total: -11.36 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -70.04 7.23 -62.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084581826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.074 kcal (2) G-P(sol) polarization free energy of solvation -70.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds