Wall clock time and date at job start Tue Mar 31 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48494 * 109.46968 * 239.99950 * 3 2 1 5 5 H 1.48498 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47017 * 119.99852 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99908 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99619 * 90.00204 * 10 9 7 12 12 C 1.52997 * 109.47212 * 89.99960 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 F 1.39900 * 109.47126 * 59.99914 * 13 12 11 15 15 F 1.39906 * 109.47544 * 179.97438 * 13 12 11 16 16 F 1.39905 * 109.47115 * 300.00260 * 13 12 11 17 17 C 1.34774 * 120.00119 * 270.00028 * 10 9 7 18 18 O 1.21270 * 120.00172 * 0.02562 * 17 10 9 19 19 C 1.50706 * 119.99638 * 180.02562 * 17 10 9 20 20 H 1.08998 * 115.56109 * 325.58214 * 19 17 10 21 21 C 1.53125 * 117.51690 * 111.33306 * 19 17 10 22 22 C 1.52411 * 117.51454 * 179.83748 * 19 17 10 23 23 C 1.53774 * 121.12960 * 141.91754 * 22 19 17 24 24 C 1.54478 * 102.21003 * 241.92090 * 23 22 19 25 25 C 1.51427 * 105.23034 * 334.25137 * 24 23 22 26 26 C 1.38461 * 130.36476 * 196.80089 * 25 24 23 27 27 C 1.38090 * 120.26349 * 180.16630 * 26 25 24 28 28 C 1.38250 * 119.91758 * 359.97438 * 27 26 25 29 29 C 1.38086 * 119.93691 * 359.97438 * 28 27 26 30 30 C 1.38390 * 109.79424 * 16.90809 * 25 24 23 31 31 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.46741 * 59.99693 * 9 7 2 33 33 H 1.09003 * 109.46917 * 300.00358 * 9 7 2 34 34 H 1.09002 * 109.47068 * 210.00020 * 11 10 9 35 35 H 1.09001 * 109.47372 * 330.00108 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 38 38 H 1.08995 * 117.51652 * 214.88107 * 21 19 17 39 39 H 1.08998 * 117.51117 * 359.95231 * 21 19 17 40 40 H 1.09007 * 110.85259 * 0.09702 * 23 22 19 41 41 H 1.08997 * 110.85658 * 123.73996 * 23 22 19 42 42 H 1.08999 * 110.28886 * 215.31332 * 24 23 22 43 43 H 1.09001 * 110.37754 * 93.23212 * 24 23 22 44 44 H 1.07997 * 119.87041 * 0.18436 * 26 25 24 45 45 H 1.08004 * 120.04380 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.03374 * 179.97438 * 28 27 26 47 47 H 1.08006 * 119.86039 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6799 -4.1688 1.2702 12 6 1.7496 -5.2998 1.7130 13 6 2.2479 -5.8811 3.0376 14 9 2.2590 -4.8777 4.0124 15 9 1.3968 -6.9149 3.4429 16 9 3.5433 -6.3818 2.8691 17 6 2.6400 -4.1254 -1.1658 18 8 2.2456 -3.6647 -2.2160 19 6 3.6189 -5.2712 -1.1659 20 1 4.3474 -5.2675 -0.3552 21 6 3.1164 -6.6310 -1.6592 22 6 4.0726 -5.8096 -2.5177 23 6 5.5247 -6.2606 -2.7470 24 6 5.9979 -5.2895 -3.8513 25 6 4.7385 -4.8742 -4.5822 26 6 4.5760 -4.2802 -5.8224 27 6 3.3115 -3.9841 -6.2918 28 6 2.2028 -4.2819 -5.5216 29 6 2.3620 -4.8751 -4.2849 30 6 3.6289 -5.1729 -3.8110 31 1 -0.4851 0.8401 -0.0004 32 1 0.6240 -2.5574 -0.8880 33 1 0.6247 -2.5563 0.8920 34 1 3.6893 -4.5589 1.1393 35 1 2.6882 -3.3868 2.0295 36 1 0.7402 -4.9097 1.8439 37 1 1.7412 -6.0818 0.9538 38 1 3.5148 -7.5216 -1.1734 39 1 2.0776 -6.6967 -1.9828 40 1 6.1174 -6.1362 -1.8407 41 1 5.5600 -7.2925 -3.0965 42 1 6.6810 -5.7963 -4.5330 43 1 6.4828 -4.4192 -3.4090 44 1 5.4415 -4.0479 -6.4251 45 1 3.1888 -3.5212 -7.2599 46 1 1.2130 -4.0507 -5.8867 47 1 1.4949 -5.1076 -3.6843 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084581827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:25 Heat of formation + Delta-G solvation = -136.129052 kcal Electronic energy + Delta-G solvation = -34386.723163 eV Core-core repulsion = 29505.994569 eV Total energy + Delta-G solvation = -4880.728594 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.07421 -47.58914 -47.53110 -40.65619 -38.83863 -36.68763 -35.59084 -33.65840 -32.92903 -31.48242 -30.33169 -28.68349 -27.77079 -25.52885 -24.94516 -24.03366 -22.52783 -22.35006 -21.94494 -20.78278 -19.48910 -18.70713 -18.51833 -17.94821 -17.45972 -16.59492 -16.40648 -16.26035 -15.28662 -15.09724 -14.72386 -14.67283 -14.60381 -14.50270 -14.36376 -14.08819 -13.99371 -13.75704 -13.72077 -13.62418 -13.44616 -13.26181 -12.79007 -12.61227 -12.41944 -12.25686 -12.06698 -11.97703 -11.69613 -11.66230 -11.46876 -11.34801 -11.15464 -10.93347 -10.89680 -10.64235 -10.45578 -10.27000 -10.21707 -10.14099 -9.72015 -9.08558 -8.47449 -8.26949 -7.96066 -7.83139 -6.09126 -4.13700 1.64539 1.81217 2.76087 3.05816 3.29999 3.34362 3.37730 3.57156 3.88184 3.97819 4.09478 4.09696 4.25039 4.40701 4.50878 4.61454 4.71518 4.84758 4.95911 5.00988 5.09103 5.23461 5.28914 5.32799 5.35079 5.38442 5.47641 5.53004 5.62619 5.64190 5.73300 5.74951 5.84658 5.92078 5.95508 6.05932 6.07042 6.15794 6.32336 6.50048 6.78809 6.91645 6.92925 7.03607 7.33478 7.37181 7.42476 7.86734 8.16515 8.26148 8.84174 9.00754 9.51824 10.98992 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.006227 B = 0.004525 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4495.599709 B = 6186.492324 C = 9515.321310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.247 3.753 10 N -0.592 5.592 11 C 0.113 3.887 12 C -0.187 4.187 13 C 0.456 3.544 14 F -0.181 7.181 15 F -0.188 7.188 16 F -0.186 7.186 17 C 0.532 3.468 18 O -0.514 6.514 19 C -0.170 4.170 20 H 0.123 0.877 21 C -0.142 4.142 22 C -0.059 4.059 23 C -0.083 4.083 24 C -0.077 4.077 25 C -0.099 4.099 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.131 4.131 29 C -0.038 4.038 30 C -0.048 4.048 31 H 0.264 0.736 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 -16.176 -1.911 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.129 3.871 10 N -0.323 5.323 11 C -0.012 4.012 12 C -0.227 4.227 13 C 0.402 3.598 14 F -0.162 7.162 15 F -0.169 7.169 16 F -0.168 7.168 17 C 0.318 3.682 18 O -0.390 6.390 19 C -0.192 4.192 20 H 0.141 0.859 21 C -0.180 4.180 22 C -0.060 4.060 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.099 4.099 26 C -0.141 4.141 27 C -0.137 4.137 28 C -0.149 4.149 29 C -0.056 4.056 30 C -0.048 4.048 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.631 -15.767 -2.452 17.688 hybrid contribution 0.428 1.106 0.531 1.299 sum 8.059 -14.662 -1.921 16.841 Atomic orbital electron populations 1.69908 1.05965 1.27192 1.50233 1.24902 0.94855 0.99169 0.94945 0.86583 0.79584 0.82774 0.78673 1.20194 1.21141 1.20194 1.21357 0.93317 0.90581 1.51364 0.92505 1.19318 0.87294 0.82060 0.98451 1.48140 1.46049 1.34861 1.03260 1.21328 0.95849 0.94923 0.89105 1.23454 1.04628 1.02167 0.92452 1.20569 0.75275 0.76001 0.88004 1.93205 1.96262 1.60627 1.66143 1.93178 1.70858 1.60715 1.92184 1.93167 1.39753 1.88195 1.95642 1.19434 0.81567 0.83024 0.84148 1.90729 1.57502 1.60774 1.30017 1.22504 1.02589 0.95565 0.98499 0.85931 1.22970 1.00052 0.92874 1.02055 1.20269 0.95345 1.01315 0.89065 1.21818 0.92331 0.99054 0.98845 1.20996 0.95102 0.98994 0.96329 1.20419 0.95360 0.99543 0.94536 1.20387 0.97041 1.01291 0.95428 1.20918 0.92559 1.00478 0.99710 1.20955 0.98518 1.00483 0.94965 1.20479 0.96310 0.95195 0.93617 1.19333 0.93256 0.99290 0.92947 0.92626 0.93651 0.95014 0.90299 0.88673 0.86662 0.87380 0.87603 0.88129 0.90510 0.90281 0.90969 0.90353 0.86992 0.86578 0.86447 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.50 9.39 -34.44 -0.32 -14.83 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.25 6.08 5.16 -5.19 -0.03 6.05 16 10 N -0.59 -11.45 2.46 -175.05 -0.43 -11.88 16 11 C 0.11 1.68 4.99 -4.04 -0.02 1.66 16 12 C -0.19 -2.26 5.58 -26.74 -0.15 -2.41 16 13 C 0.46 5.37 3.16 37.15 0.12 5.49 16 14 F -0.18 -2.39 16.80 2.25 0.04 -2.35 16 15 F -0.19 -2.25 17.32 2.25 0.04 -2.21 16 16 F -0.19 -2.14 16.80 2.25 0.04 -2.11 16 17 C 0.53 10.17 7.45 -10.98 -0.08 10.08 16 18 O -0.51 -11.76 11.38 5.57 0.06 -11.69 16 19 C -0.17 -2.41 5.14 -92.01 -0.47 -2.88 16 20 H 0.12 1.49 6.44 -51.93 -0.33 1.16 16 21 C -0.14 -1.64 9.95 -26.91 -0.27 -1.91 16 22 C -0.06 -0.80 2.34 -155.74 -0.36 -1.16 16 23 C -0.08 -0.88 6.85 -25.55 -0.18 -1.05 16 24 C -0.08 -0.90 6.77 -26.75 -0.18 -1.08 16 25 C -0.10 -1.46 6.14 -104.13 -0.64 -2.10 16 26 C -0.12 -1.76 10.03 -39.55 -0.40 -2.16 16 27 C -0.12 -1.72 10.05 -39.63 -0.40 -2.12 16 28 C -0.13 -2.08 10.04 -39.63 -0.40 -2.48 16 29 C -0.04 -0.65 7.45 -39.54 -0.29 -0.94 16 30 C -0.05 -0.77 4.86 -104.41 -0.51 -1.28 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.08 1.00 5.66 -51.93 -0.29 0.71 16 35 H 0.09 1.51 7.73 -51.93 -0.40 1.11 16 36 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 46 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 47 H 0.12 2.04 7.23 -52.48 -0.38 1.66 16 LS Contribution 397.67 15.07 5.99 5.99 Total: -1.00 -32.03 397.67 -9.63 -41.66 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.41 Total: 2.57 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -4.68 Total: -11.43 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.31 Total: -37.16 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.06 Total: -11.69 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.67 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.03 -9.63 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084581827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.465 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds