Wall clock time and date at job start Tue Mar 31 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48494 * 109.46968 * 239.99950 * 3 2 1 5 5 H 1.48498 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47017 * 119.99852 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99908 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99619 * 90.00204 * 10 9 7 12 12 C 1.52997 * 109.47212 * 89.99960 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 F 1.39900 * 109.47126 * 59.99914 * 13 12 11 15 15 F 1.39906 * 109.47544 * 179.97438 * 13 12 11 16 16 F 1.39905 * 109.47115 * 300.00260 * 13 12 11 17 17 C 1.34774 * 120.00119 * 270.00028 * 10 9 7 18 18 O 1.21270 * 120.00172 * 0.02562 * 17 10 9 19 19 C 1.50706 * 119.99638 * 180.02562 * 17 10 9 20 20 H 1.08998 * 115.56109 * 325.58214 * 19 17 10 21 21 C 1.53125 * 117.51690 * 111.33306 * 19 17 10 22 22 C 1.52411 * 117.51454 * 179.83748 * 19 17 10 23 23 C 1.53774 * 121.12960 * 141.91754 * 22 19 17 24 24 C 1.54478 * 102.21003 * 241.92090 * 23 22 19 25 25 C 1.51427 * 105.23034 * 334.25137 * 24 23 22 26 26 C 1.38461 * 130.36476 * 196.80089 * 25 24 23 27 27 C 1.38090 * 120.26349 * 180.16630 * 26 25 24 28 28 C 1.38250 * 119.91758 * 359.97438 * 27 26 25 29 29 C 1.38086 * 119.93691 * 359.97438 * 28 27 26 30 30 C 1.38390 * 109.79424 * 16.90809 * 25 24 23 31 31 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.46741 * 59.99693 * 9 7 2 33 33 H 1.09003 * 109.46917 * 300.00358 * 9 7 2 34 34 H 1.09002 * 109.47068 * 210.00020 * 11 10 9 35 35 H 1.09001 * 109.47372 * 330.00108 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 38 38 H 1.08995 * 117.51652 * 214.88107 * 21 19 17 39 39 H 1.08998 * 117.51117 * 359.95231 * 21 19 17 40 40 H 1.09007 * 110.85259 * 0.09702 * 23 22 19 41 41 H 1.08997 * 110.85658 * 123.73996 * 23 22 19 42 42 H 1.08999 * 110.28886 * 215.31332 * 24 23 22 43 43 H 1.09001 * 110.37754 * 93.23212 * 24 23 22 44 44 H 1.07997 * 119.87041 * 0.18436 * 26 25 24 45 45 H 1.08004 * 120.04380 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.03374 * 179.97438 * 28 27 26 47 47 H 1.08006 * 119.86039 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6799 -4.1688 1.2702 12 6 1.7496 -5.2998 1.7130 13 6 2.2479 -5.8811 3.0376 14 9 2.2590 -4.8777 4.0124 15 9 1.3968 -6.9149 3.4429 16 9 3.5433 -6.3818 2.8691 17 6 2.6400 -4.1254 -1.1658 18 8 2.2456 -3.6647 -2.2160 19 6 3.6189 -5.2712 -1.1659 20 1 4.3474 -5.2675 -0.3552 21 6 3.1164 -6.6310 -1.6592 22 6 4.0726 -5.8096 -2.5177 23 6 5.5247 -6.2606 -2.7470 24 6 5.9979 -5.2895 -3.8513 25 6 4.7385 -4.8742 -4.5822 26 6 4.5760 -4.2802 -5.8224 27 6 3.3115 -3.9841 -6.2918 28 6 2.2028 -4.2819 -5.5216 29 6 2.3620 -4.8751 -4.2849 30 6 3.6289 -5.1729 -3.8110 31 1 -0.4851 0.8401 -0.0004 32 1 0.6240 -2.5574 -0.8880 33 1 0.6247 -2.5563 0.8920 34 1 3.6893 -4.5589 1.1393 35 1 2.6882 -3.3868 2.0295 36 1 0.7402 -4.9097 1.8439 37 1 1.7412 -6.0818 0.9538 38 1 3.5148 -7.5216 -1.1734 39 1 2.0776 -6.6967 -1.9828 40 1 6.1174 -6.1362 -1.8407 41 1 5.5600 -7.2925 -3.0965 42 1 6.6810 -5.7963 -4.5330 43 1 6.4828 -4.4192 -3.4090 44 1 5.4415 -4.0479 -6.4251 45 1 3.1888 -3.5212 -7.2599 46 1 1.2130 -4.0507 -5.8867 47 1 1.4949 -5.1076 -3.6843 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084581827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:24 Heat of formation + Delta-G solvation = -151.240376 kcal Electronic energy + Delta-G solvation = -34387.378439 eV Core-core repulsion = 29505.994569 eV Total energy + Delta-G solvation = -4881.383870 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.04054 -48.54389 -48.50650 -41.80422 -40.19325 -37.83475 -37.05241 -35.07253 -34.54475 -32.87896 -31.49457 -29.76939 -29.53966 -26.70037 -26.32531 -25.36812 -23.77410 -23.43805 -23.27609 -21.85435 -20.62403 -19.83005 -19.48694 -19.12726 -18.78573 -18.26537 -17.86895 -17.53580 -16.77855 -16.26182 -16.09237 -15.90330 -15.64961 -15.61836 -15.46179 -15.35879 -14.99081 -14.95483 -14.72400 -14.66640 -14.59802 -14.53602 -14.16431 -13.93508 -13.68435 -13.57485 -13.37433 -13.21126 -13.00692 -12.93941 -12.71620 -12.61903 -12.56481 -12.39301 -12.32884 -12.11844 -11.94126 -11.77919 -11.53723 -11.24274 -11.17705 -10.65132 -10.53889 -9.54104 -9.41054 -9.12436 -8.24070 -6.37356 0.50197 0.63753 1.33912 1.37399 1.44257 1.68569 1.76385 2.24094 2.39104 2.75698 2.92427 3.05615 3.07546 3.13195 3.17017 3.46370 3.63352 3.69147 3.76851 3.93593 3.98368 4.01367 4.19293 4.23250 4.28323 4.34043 4.55028 4.58998 4.61629 4.64178 4.75684 4.79325 4.85944 4.90924 4.96587 5.02576 5.05662 5.19262 5.23956 5.25393 5.31191 5.41300 5.53535 5.65600 5.74567 5.81504 5.87294 6.05445 6.24476 6.68299 6.75588 7.28660 7.51642 8.82576 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.006227 B = 0.004525 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4495.599709 B = 6186.492324 C = 9515.321310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.959 3.041 4 H -0.281 1.281 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.266 3.734 10 N -0.597 5.597 11 C 0.111 3.889 12 C -0.178 4.178 13 C 0.467 3.533 14 F -0.190 7.190 15 F -0.186 7.186 16 F -0.179 7.179 17 C 0.521 3.479 18 O -0.562 6.562 19 C -0.177 4.177 20 H 0.152 0.848 21 C -0.117 4.117 22 C -0.070 4.070 23 C -0.073 4.073 24 C -0.077 4.077 25 C -0.111 4.111 26 C -0.132 4.132 27 C -0.126 4.126 28 C -0.155 4.155 29 C -0.063 4.063 30 C -0.070 4.070 31 H 0.266 0.734 32 H 0.001 0.999 33 H 0.024 0.976 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.120 0.880 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.201 -17.904 -1.243 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.207 1.207 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.069 0.931 9 C 0.145 3.855 10 N -0.328 5.328 11 C -0.012 4.012 12 C -0.218 4.218 13 C 0.412 3.588 14 F -0.172 7.172 15 F -0.168 7.168 16 F -0.160 7.160 17 C 0.310 3.690 18 O -0.441 6.441 19 C -0.197 4.197 20 H 0.169 0.831 21 C -0.154 4.154 22 C -0.071 4.071 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.111 4.111 26 C -0.150 4.150 27 C -0.144 4.144 28 C -0.173 4.173 29 C -0.081 4.081 30 C -0.070 4.070 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.042 0.958 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.167 0.833 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.138 0.862 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.836 -17.531 -1.747 20.684 hybrid contribution -0.621 1.641 0.265 1.774 sum 10.215 -15.890 -1.482 18.948 Atomic orbital electron populations 1.70022 1.07371 1.28086 1.51089 1.25751 0.95711 1.02703 0.94590 0.85600 0.78462 0.78729 0.78852 1.20685 1.20344 1.18491 1.21659 0.93147 0.92075 1.51019 0.93131 1.18701 0.87695 0.83360 0.95786 1.48037 1.45366 1.33879 1.05481 1.21497 0.97844 0.95316 0.86581 1.23301 1.03402 1.01738 0.93332 1.20319 0.75445 0.75757 0.87280 1.93194 1.96319 1.61155 1.66534 1.93185 1.70913 1.60544 1.92110 1.93181 1.39222 1.88052 1.95559 1.20399 0.81684 0.83850 0.83063 1.90722 1.59204 1.62507 1.31667 1.22432 1.02278 0.94742 1.00288 0.83103 1.23126 0.99319 0.92725 1.00267 1.20552 0.97653 1.01496 0.87397 1.21905 0.89936 0.99745 0.99398 1.21105 0.93900 0.99480 0.96930 1.20972 0.96642 0.98856 0.94668 1.20804 0.97725 1.00598 0.95824 1.21236 0.92388 1.00268 1.00520 1.21172 0.99509 1.01306 0.95361 1.20495 0.96617 0.96856 0.94145 1.19746 0.93003 0.99622 0.94674 0.92482 0.98117 0.95783 0.87342 0.90085 0.87565 0.85352 0.83283 0.89584 0.88239 0.88010 0.88350 0.90671 0.84319 0.84253 0.86245 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 2 C 0.01 0.67 5.46 84.65 0.46 1.13 16 3 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 9 C 0.27 13.76 5.16 85.64 0.44 14.21 16 10 N -0.60 -23.62 2.46 -826.14 -2.03 -25.65 16 11 C 0.11 3.19 4.99 86.38 0.43 3.62 16 12 C -0.18 -4.05 5.58 30.59 0.17 -3.88 16 13 C 0.47 9.99 3.16 71.98 0.23 10.21 16 14 F -0.19 -4.78 16.80 44.97 0.76 -4.03 16 15 F -0.19 -4.05 17.32 44.97 0.78 -3.27 16 16 F -0.18 -3.51 16.80 44.97 0.76 -2.76 16 17 C 0.52 20.28 7.45 87.66 0.65 20.93 16 18 O -0.56 -27.22 11.38 -3.00 -0.03 -27.25 16 19 C -0.18 -4.61 5.14 -11.69 -0.06 -4.67 16 20 H 0.15 3.04 6.44 -2.39 -0.02 3.02 16 21 C -0.12 -2.38 9.95 30.48 0.30 -2.08 16 22 C -0.07 -1.74 2.34 -52.98 -0.12 -1.86 16 23 C -0.07 -1.22 6.85 31.36 0.21 -1.01 16 24 C -0.08 -1.55 6.77 30.58 0.21 -1.35 16 25 C -0.11 -3.17 6.14 -19.54 -0.12 -3.29 16 26 C -0.13 -3.63 10.03 22.29 0.22 -3.41 16 27 C -0.13 -3.69 10.05 22.24 0.22 -3.47 16 28 C -0.16 -5.26 10.04 22.24 0.22 -5.03 16 29 C -0.06 -2.29 7.45 22.30 0.17 -2.12 16 30 C -0.07 -2.26 4.86 -19.72 -0.10 -2.35 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.00 0.04 7.42 -2.38 -0.02 0.03 16 33 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.11 2.45 5.66 -2.39 -0.01 2.44 16 35 H 0.08 2.56 7.73 -2.39 -0.02 2.54 16 36 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 1.26 8.12 -2.38 -0.02 1.24 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 45 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 46 H 0.12 3.74 8.06 -2.91 -0.02 3.71 16 47 H 0.09 3.67 7.23 -2.91 -0.02 3.65 16 Total: -1.00 -74.53 397.67 7.32 -67.21 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.00 Total: 18.80 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.79 Total: -14.89 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.74 Total: -81.00 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.03 Total: -27.25 kcal Atomic # 9 Polarization: -12.35 SS G_CDS: 2.29 Total: -10.06 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -74.53 7.32 -67.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084581827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.028 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds